Rh6AG222700

ATP synthase subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005978
Physical Location & Seq
Reverse (-)
40029786 .. 40030241
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG222700.1

Sequence Viewer

Length: 456 bp
ATGGAATTGATCAATAACATTGCCAAAGCTCATGGGGGTATATCTGTATTTGGCGGAGTGGGTGAACGTACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATGCTGCGTAATTAATGAACAAAATATTCCCGAATCACTAGTGGCTCTAGTCCATGGTCAAATGAATGAACCACCCGGAACTCGTATGAGGGTTGGTTTAACCGCCCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCAGGATCCGAAGTATCCACTTTATTGGGCAAAATGCCTTCCACTGTGGGTTATCAACCCACCTTTAGTACCGAAATGGGCTTTTTACAAGAAATAATTACTTCTACCAAAGAGGGGTCCATAACTTCTATCAAGCAGTTTATGTACCAGCGGGCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N

Protein Analysis

151

Amino Acids

16.82

Weight (kDa)

4.91

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab PF00006 3 - 143 6.1e-34 ATP synthase alpha/beta family, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 54, 210, 224, 445
AclWI GGATC 2 cut(s) 294, 307
AfaI GTAC 4 cut(s) 70, 258, 364, 440
AfiI CCNNNNNNNGG 2 cut(s) 220, 408
AhlI ACTAGT 1 cut(s) 145
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AlwI GGATC 2 cut(s) 294, 307
ApeKI GCWGC 1 cut(s) 111
AseI ATTAAT 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 411
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 411
BamHI GGATCC 1 cut(s) 299
BauI CACGAG 1 cut(s) 72
BbvI GCAGC 1 cut(s) 98
BciVI GTATCC 1 cut(s) 319
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 1 cut(s) 183
BcuI ACTAGT 1 cut(s) 145
BfaI CTAG 2 cut(s) 146, 155
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 2 cut(s) 301, 412
BmrFI CCNGG 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 408
Bse3DI GCAATG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 220, 408
BseMI GCAATG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 220, 408
BsmI GAATGC 1 cut(s) 113
Bsp143I GATC 3 cut(s) 9, 85, 299
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 4 cut(s) 54, 210, 224, 445
BspLI GGNNCC 2 cut(s) 301, 412
BspPI GGATC 2 cut(s) 294, 307
BsrDI GCAATG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 3 cut(s) 9, 85, 299
BssSI CACGAG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 160
Bst2BI CACGAG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 447
BstDSI CCRYGG 1 cut(s) 160
BstKTI GATC 3 cut(s) 12, 88, 302
BstMBI GATC 3 cut(s) 9, 85, 299
BstSCI CCNGG 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 299
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 1 cut(s) 299
BsuI GTATCC 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 411
Csp6I GTAC 4 cut(s) 69, 257, 363, 439
CviAII CATG 3 cut(s) 32, 94, 161
CviJI RGCY 3 cut(s) 29, 152, 375
CviKI_1 RGCY 3 cut(s) 29, 152, 375
CviQI GTAC 4 cut(s) 69, 257, 363, 439
DpnI GATC 3 cut(s) 11, 87, 301
DpnII GATC 3 cut(s) 9, 85, 299
EciI GGCGGA 2 cut(s) 69, 239
Eco130I CCWWGG 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 3 cut(s) 35, 97, 164
FaiI YATR 8 cut(s) 33, 41, 95, 162, 194, 221, 416, 437
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 3 cut(s) 31, 93, 160
FauI CCCGC 1 cut(s) 438
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 2 cut(s) 146, 155
GluI GCNGC 1 cut(s) 112
HapII CCGG 1 cut(s) 183
Hin1II CATG 3 cut(s) 35, 97, 164
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 236, 304
Hpy188III TCNNGA 2 cut(s) 74, 137
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 71, 342
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 2 cut(s) 67, 255
HpySE526I ACGT 2 cut(s) 67, 255
Hsp92II CATG 3 cut(s) 35, 97, 164
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 3 cut(s) 9, 85, 299
LpnPI CCDG 2 cut(s) 196, 282
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 2 cut(s) 146, 155
MaeII ACGT 2 cut(s) 67, 255
MalI GATC 3 cut(s) 11, 87, 301
MboI GATC 3 cut(s) 9, 85, 299
MboII GAAGA 1 cut(s) 271
MflI RGATCY 1 cut(s) 299
MluCI AATT 3 cut(s) 5, 117, 390
MnlI CCTC 2 cut(s) 189, 400
MseI TTAA 3 cut(s) 120, 206, 243
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 445
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 160
NdeII GATC 3 cut(s) 9, 85, 299
NlaIII CATG 3 cut(s) 35, 97, 164
NlaIV GGNNCC 2 cut(s) 301, 412
PctI GAATGC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 113
PshBI ATTAAT 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 301, 412
PspPI GGNCC 1 cut(s) 411
PsrI GAACNNNNNNTAC 2 cut(s) 240, 272
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 4 cut(s) 70, 258, 364, 440
RsaNI GTAC 4 cut(s) 69, 257, 363, 439
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 3 cut(s) 120, 206, 243
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 3 cut(s) 9, 85, 299
Sau96I GGNCC 1 cut(s) 411
ScrFI CCNGG 1 cut(s) 183
SetI ASST 4 cut(s) 31, 70, 258, 359
SinI GGWCC 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 145
Sse9I AATT 3 cut(s) 5, 117, 390
SsiI CCGC 4 cut(s) 54, 210, 224, 445
SspI AATATT 2 cut(s) 133, 230
SspMI CTAG 2 cut(s) 146, 155
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 2 cut(s) 70, 258
TaqI TCGA 1 cut(s) 270
TasI AATT 3 cut(s) 5, 117, 390
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 3 cut(s) 120, 206, 243
Tru9I TTAA 3 cut(s) 120, 206, 243
TscAI CASTG 1 cut(s) 343
TseI GCWGC 1 cut(s) 111
TspDTI ATGAA 5 cut(s) 116, 138, 185, 189, 261
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 411
VspI ATTAAT 1 cut(s) 120
XspI CTAG 2 cut(s) 146, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.