Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005978

Physical Location & Seq

Genomic Coordinates Forward (+)

41346602 .. 41347339

Gene Structure 738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1295200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAATTGATCAACAACATTGCCAAAGCTCACGGGGGTGTATCCGTATTTGGCGGAGTAGATGAACGTACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATGTGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTAGCTCTAGTCTACGGTCAGATGAATGAACCACCAGGAGCTCGTATGAAAGTAGGTTTAACCGCCCTAACTATGGCTGAATATTTTCGAGATGTTAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCTGTTTTGTCCAAGTAGGATCCGAAGTATCCACTTTATTGGGTAGAATGCCTTCCGCTGTGGGTTATCAACCTACCCTTAGTACTGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAAAAGGGGTCTATAACTTCTATTCAAGCAGTTTGTGTACTTGTGGACGATTTGACCGATCCTGCTCCGACCATGACATTTGCACATTTAGATGCTACTACCGTACTATCAAGAGGATTAGCTGCCAAGGGTATCTATCCAACAATTTATCCTTTAGATTCAACATCAACTATGCTCCAACCTCGTATCGTCGGTGAAGAACATTATGAAACTACGCAAAGGGTTAAAGAAACTTTACAACATTACAAAGAACTTCAAGACATTATAGCTATCCTTGGGTTGGACGAATTATCTGAAGACGATTGCTTAACCATAGCAAAGAGCACGAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008270 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0010287 GO:0010319 GO:0016020 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071944 GO:0098542 GO:0098796 GO:0098807

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_DE ATP-synt_DE_N ATP-synt_ab ATP-synt_ab_N

Protein Analysis

246

Amino Acids

26.92

Weight (kDa)

4.68

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab	PF00006	3 - 190	1.4e-50	ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C	PF22919	196 - 241	1e-08	C-terminal domain of V and A type ATP synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00480
malus_domestica	MD01G1070700.v1.1 MD11G1295200.v1.1
pyrus_communis	pycom12397g00260
rosa_chinensis	RchiOBHm_Chr7g0228801 RchiOBHm_CPg0502121
rosa_laevigata	RLG00000000068 RLG00000000107 RLG00000000164 RLG00000000222 RLG00000000258 RLG00000000268 RLG00000000291 RLG00000000323 RLG00000000330 RLG00000000349 RLG00000030424 RLG00000037106
rosa_multiflora	Rmu_sc0013945.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030890
rosa_rugosa	RorugMtG0002300
rosa_samantha	Rh4BG163500 Rh6AG222700 Rh6BG226200 Rh7AG405300
rosa_wichuraiana	Rw6G019450 Rw7G033580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	3 cut(s)	54, 210, 336
AclWI	GGATC	3 cut(s)	294, 307, 455
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	6 cut(s)	70, 258, 364, 376, 441, 507
AfiI	CCNNNNNNNGG	3 cut(s)	220, 408, 682
AgsI	TTSAA	3 cut(s)	428, 564, 659
AjnI	CCWGG	1 cut(s)	181
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	5 cut(s)	29, 152, 188, 524, 671
AluI	AGCT	5 cut(s)	29, 152, 188, 524, 671
Alw21I	GWGCWC	2 cut(s)	190, 728
AlwI	GGATC	3 cut(s)	294, 307, 455
ApeKI	GCWGC	1 cut(s)	524
AseI	ATTAAT	1 cut(s)	120
Asp700I	GAANNNNTTC	3 cut(s)	231, 331, 394
AsuHPI	GGTGA	1 cut(s)	608
BamHI	GGATCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	190
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	2 cut(s)	190, 728
BbvI	GCAGC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	2 cut(s)	52, 319
BclI	TGATCA	1 cut(s)	9
BfaI	CTAG	1 cut(s)	155
BfuI	GTATCC	2 cut(s)	52, 319
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
BmcAI	AGTACT	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	705
BsaJI	CCNNGG	2 cut(s)	528, 676
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 408, 682
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	528, 676
BseLI	CCNNNNNNNGG	3 cut(s)	220, 408, 682
BseMI	GCAATG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	511
BsiHKAI	GWGCWC	2 cut(s)	190, 728
BslI	CCNNNNNNNGG	3 cut(s)	220, 408, 682
BsmI	GAATGC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	190, 728
Bsp143I	GATC	4 cut(s)	9, 85, 299, 460
BspACI	CCGC	3 cut(s)	54, 210, 336
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	3 cut(s)	294, 307, 455
BsrDI	GCAATG	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	528, 676
BssMI	GATC	4 cut(s)	9, 85, 299, 460
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	2 cut(s)	528, 676
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	164, 505
BstDEI	CTNAG	1 cut(s)	359
BstKTI	GATC	4 cut(s)	12, 88, 302, 463
BstMBI	GATC	4 cut(s)	9, 85, 299, 460
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	299
BsuI	GTATCC	2 cut(s)	52, 319
Csp6I	GTAC	6 cut(s)	69, 257, 363, 375, 440, 506
CviAII	CATG	2 cut(s)	94, 475
CviJI	RGCY	6 cut(s)	29, 152, 188, 224, 524, 671
CviKI_1	RGCY	6 cut(s)	29, 152, 188, 224, 524, 671
CviQI	GTAC	6 cut(s)	69, 257, 363, 375, 440, 506
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	4 cut(s)	11, 87, 301, 462
DpnII	GATC	4 cut(s)	9, 85, 299, 460
EciI	GGCGGA	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	2 cut(s)	528, 676
Eco24I	GRGCYC	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	717
EcoICRI	GAGCTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	528, 676
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	528, 676
FaeI	CATG	2 cut(s)	97, 478
FaiI	YATR	9 cut(s)	95, 194, 221, 416, 476, 575, 609, 668, 716
FalI	AAGNNNNNCTT	4 cut(s)	243, 275, 379, 411
FatI	CATG	2 cut(s)	93, 474
FbaI	TGATCA	1 cut(s)	9
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	525
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	1 cut(s)	525
Hin1II	CATG	2 cut(s)	97, 478
HinfI	GANTC	2 cut(s)	140, 560
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	3 cut(s)	160, 440, 448
Hpy188I	TCNGA	4 cut(s)	168, 304, 471, 697
Hpy188III	TCNNGA	4 cut(s)	74, 236, 513, 659
Hpy8I	GTNNAC	3 cut(s)	160, 440, 448
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	2 cut(s)	71, 342
HpyCH4III	ACNGT	2 cut(s)	164, 505
HpyCH4IV	ACGT	2 cut(s)	67, 255
HpyCH4V	TGCA	2 cut(s)	137, 485
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	2 cut(s)	67, 255
Hsp92II	CATG	2 cut(s)	97, 478
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	9, 85, 299, 460
LmnI	GCTCC	3 cut(s)	185, 472, 582
LpnPI	CCDG	3 cut(s)	168, 195, 477
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	67, 255
MalI	GATC	4 cut(s)	11, 87, 301, 462
MboI	GATC	4 cut(s)	9, 85, 299, 460
MboII	GAAGA	3 cut(s)	271, 611, 710
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	190, 728
MluCI	AATT	6 cut(s)	5, 117, 390, 546, 689, 733
MmeI	TCCRAC	4 cut(s)	494, 566, 604, 663
MnlI	CCTC	2 cut(s)	509, 594
MroXI	GAANNNNTTC	3 cut(s)	231, 331, 394
MseI	TTAA	5 cut(s)	120, 206, 243, 627, 710
MslI	CAYNNNNRTG	3 cut(s)	36, 98, 492
MspA1I	CMGCKG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	183
NdeII	GATC	4 cut(s)	9, 85, 299, 460
NlaIII	CATG	2 cut(s)	97, 478
NlaIV	GGNNCC	1 cut(s)	301
OliI	CACNNNNGTG	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PctI	GAATGC	1 cut(s)	333
PdmI	GAANNNNTTC	3 cut(s)	231, 331, 394
PfeI	GAWTC	2 cut(s)	140, 560
PkrI	GCNGC	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	301
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	6 cut(s)	70, 258, 364, 376, 441, 507
RsaNI	GTAC	6 cut(s)	69, 257, 363, 375, 440, 506
RseI	CAYNNNNRTG	3 cut(s)	36, 98, 492
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	5 cut(s)	120, 206, 243, 627, 710
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	4 cut(s)	9, 85, 299, 460
ScaI	AGTACT	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	2 cut(s)	190, 728
SfaNI	GCATC	1 cut(s)	484
SmiMI	CAYNNNNRTG	3 cut(s)	36, 98, 492
Sse9I	AATT	6 cut(s)	5, 117, 390, 546, 689, 733
SsiI	CCGC	3 cut(s)	54, 210, 336
SspI	AATATT	2 cut(s)	133, 230
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	528, 676
TaaI	ACNGT	2 cut(s)	164, 505
TaiI	ACGT	2 cut(s)	70, 258
TaqI	TCGA	2 cut(s)	235, 270
TaqII	GACCGA	1 cut(s)	473
TasI	AATT	6 cut(s)	5, 117, 390, 546, 689, 733
TatI	WGTACW	2 cut(s)	362, 439
TfiI	GAWTC	2 cut(s)	140, 560
Tru1I	TTAA	5 cut(s)	120, 206, 243, 627, 710
Tru9I	TTAA	5 cut(s)	120, 206, 243, 627, 710
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	8 cut(s)	78, 116, 138, 185, 189, 209, 261, 624
TspGWI	ACGGA	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	3 cut(s)	231, 331, 394
XspI	CTAG	1 cut(s)	155
ZrmI	AGTACT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.