Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005978

Physical Location & Seq

Genomic Coordinates Forward (+)

17534331 .. 17534615

Gene Structure 285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1070700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAATGAACCACTAGGAGCTCGTATGAGAGTAAGTTTTTCCAAGATGTTAATGAACAATTTCCGAGATGTTAATGAACAAGACATACTTCTATTTATCGACAATATCTTCCATTTTGTTCAAGCAGGATCCAAAGTATCTGCTTTATTAGGTAGAATGTCTTCCACTGTGGGTTATCAACCCACCCTTAGTACTGAAATGGGTGCTTTACAAGAAAGAATTACTTCTACCAAAGAGAGGTATGTAACTTCTATTCAAGCAGTTTATGTACCTGTGGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008270 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0010287 GO:0010319 GO:0016020 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071944 GO:0098542 GO:0098796 GO:0098807

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_DE ATP-synt_DE_N ATP-synt_ab ATP-synt_ab_N

Protein Analysis

95

Amino Acids

10.61

Weight (kDa)

6.55

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab	PF00006	1 - 93	3.5e-18	ATP synthase alpha/beta family, nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00480
malus_domestica	MD01G1070700.v1.1 MD11G1295200.v1.1
pyrus_communis	pycom12397g00260
rosa_chinensis	RchiOBHm_Chr7g0228801 RchiOBHm_CPg0502121
rosa_laevigata	RLG00000000068 RLG00000000107 RLG00000000164 RLG00000000222 RLG00000000258 RLG00000000268 RLG00000000291 RLG00000000323 RLG00000000330 RLG00000000349 RLG00000030424 RLG00000037106
rosa_multiflora	Rmu_sc0013945.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030890
rosa_rugosa	RorugMtG0002300
rosa_samantha	Rh4BG163500 Rh6AG222700 Rh6BG226200 Rh7AG405300
rosa_wichuraiana	Rw6G019450 Rw7G033580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	123, 136
AfaI	GTAC	2 cut(s)	193, 270
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	122, 257
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	123, 136
Asp700I	GAANNNNTTC	3 cut(s)	59, 160, 223
BamHI	GGATCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	22
BarI	GAAGNNNNNNTAC	2 cut(s)	145, 177
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	14
BmcAI	AGTACT	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	2 cut(s)	123, 136
BssMI	GATC	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	188
BstKTI	GATC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	192, 269
CviJI	RGCY	1 cut(s)	20
CviKI_1	RGCY	1 cut(s)	20
CviQI	GTAC	2 cut(s)	192, 269
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	22
FaiI	YATR	5 cut(s)	26, 86, 243, 267, 283
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 208, 240
FriOI	GRGCYC	1 cut(s)	22
FspBI	CTAG	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	128
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	1 cut(s)	111
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MboII	GAAGA	2 cut(s)	100, 153
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	2 cut(s)	58, 219
MnlI	CCTC	1 cut(s)	231
MroXI	GAANNNNTTC	3 cut(s)	59, 160, 223
MseI	TTAA	2 cut(s)	50, 72
NdeII	GATC	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	130
PdmI	GAANNNNTTC	3 cut(s)	59, 160, 223
Psp124BI	GAGCTC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	130
PsrI	GAACNNNNNNTAC	2 cut(s)	69, 101
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	2 cut(s)	193, 270
RsaNI	GTAC	2 cut(s)	192, 269
SacI	GAGCTC	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	50, 72
Sau3AI	GATC	1 cut(s)	128
ScaI	AGTACT	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	4 cut(s)	22, 154, 242, 274
SgeI	CNNG	9 cut(s)	26, 33, 55, 77, 92, 134, 138, 224, 269
Sse9I	AATT	2 cut(s)	58, 219
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	58, 219
TatI	WGTACW	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	50, 72
Tru9I	TTAA	2 cut(s)	50, 72
TscAI	CASTG	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	17, 21, 68, 90
TspRI	CASTG	1 cut(s)	172
XmnI	GAANNNNTTC	3 cut(s)	59, 160, 223
XspI	CTAG	1 cut(s)	14
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.