Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005978

Physical Location & Seq

Genomic Coordinates Reverse (-)

29571933 .. 29572349

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG163500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAATTGATCAACAACATTGCCAAAGTTCATGGGGGTGTATCCGTATTTGGCGGAGTGGGTGAACGTACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCCGGCGTAATTAATGAACAAAATATTCCCGAATCAAAAGTGGCTCTAGTCTATGGTCAAATGAATGAACCGCTCGGAGCTCGTATGAGGGTTGGTTTAACCGCCCTAACTATGGCGGAATATTTCCGAGATGTTAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCAGGATCCGAAGTATCCGCTTTATTGGGCAGAATGCCTTCCGCTGTGGATTATCAACCCACCCTTAGTACCGAATGGGCTCTTTACAAGAAAGAATTACTTCTACCAAAGAGGGGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008270 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0010287 GO:0010319 GO:0016020 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071944 GO:0098542 GO:0098796 GO:0098807

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_DE ATP-synt_DE_N ATP-synt_ab ATP-synt_ab_N

Protein Analysis

138

Amino Acids

15.38

Weight (kDa)

5.05

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab	PF00006	3 - 124	1.3e-29	ATP synthase alpha/beta family, nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00480
malus_domestica	MD01G1070700.v1.1 MD11G1295200.v1.1
pyrus_communis	pycom12397g00260
rosa_chinensis	RchiOBHm_Chr7g0228801 RchiOBHm_CPg0502121
rosa_laevigata	RLG00000000068 RLG00000000107 RLG00000000164 RLG00000000222 RLG00000000258 RLG00000000268 RLG00000000291 RLG00000000323 RLG00000000330 RLG00000000349 RLG00000030424 RLG00000037106
rosa_multiflora	Rmu_sc0013945.1_g000006
rosa_roxburghii	Rroxscaffold_1G00030890
rosa_rugosa	RorugMtG0002300
rosa_samantha	Rh4BG163500 Rh6AG222700 Rh6BG226200 Rh7AG405300
rosa_wichuraiana	Rw6G019450 Rw7G033580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	181
AciI	CCGC	6 cut(s)	54, 179, 210, 224, 312, 336
AclWI	GGATC	2 cut(s)	294, 307
AfaI	GTAC	3 cut(s)	70, 258, 364
AfiI	CCNNNNNNNGG	2 cut(s)	220, 407
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	294, 307
AseI	ATTAAT	1 cut(s)	120
Asp700I	GAANNNNTTC	2 cut(s)	331, 393
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	299
BanII	GRGCYC	2 cut(s)	190, 376
BauI	CACGAG	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	190
BciVI	GTATCC	2 cut(s)	52, 319
BclI	TGATCA	1 cut(s)	9
BfaI	CTAG	1 cut(s)	155
BfuI	GTATCC	2 cut(s)	52, 319
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	2 cut(s)	301, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 407
Bse3DI	GCAATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	220, 407
BseMI	GCAATG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	220, 407
BsmI	GAATGC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	190, 376
Bsp143I	GATC	3 cut(s)	9, 85, 299
BspACI	CCGC	6 cut(s)	54, 179, 210, 224, 312, 336
BspLI	GGNNCC	2 cut(s)	301, 411
BspPI	GGATC	2 cut(s)	294, 307
BsrBI	CCGCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	18
BssMI	GATC	3 cut(s)	9, 85, 299
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	359
BstKTI	GATC	3 cut(s)	12, 88, 302
BstMBI	GATC	3 cut(s)	9, 85, 299
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BsuI	GTATCC	2 cut(s)	52, 319
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	69, 257, 363
CviAII	CATG	2 cut(s)	32, 94
CviJI	RGCY	3 cut(s)	152, 188, 374
CviKI_1	RGCY	3 cut(s)	152, 188, 374
CviQI	GTAC	3 cut(s)	69, 257, 363
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	3 cut(s)	11, 87, 301
DpnII	GATC	3 cut(s)	9, 85, 299
EciI	GGCGGA	2 cut(s)	69, 239
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	2 cut(s)	190, 376
Eco47I	GGWCC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	188
EcoT38I	GRGCYC	2 cut(s)	190, 376
FaeI	CATG	2 cut(s)	35, 97
FaiI	YATR	6 cut(s)	33, 95, 162, 194, 221, 415
FalI	AAGNNNNNCTT	4 cut(s)	243, 275, 378, 410
FatI	CATG	2 cut(s)	31, 93
FbaI	TGATCA	1 cut(s)	9
FriOI	GRGCYC	2 cut(s)	190, 376
FspBI	CTAG	1 cut(s)	155
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	2 cut(s)	35, 97
HinfI	GANTC	2 cut(s)	107, 140
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	3 cut(s)	185, 236, 304
Hpy188III	TCNNGA	2 cut(s)	74, 137
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	71, 342
HpyCH4IV	ACGT	2 cut(s)	67, 255
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	2 cut(s)	67, 255
Hsp92II	CATG	2 cut(s)	35, 97
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	9, 85, 299
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	2 cut(s)	124, 282
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	67, 255
MalI	GATC	3 cut(s)	11, 87, 301
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	3 cut(s)	9, 85, 299
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	190, 376
MluCI	AATT	3 cut(s)	5, 117, 389
MnlI	CCTC	2 cut(s)	189, 399
MroXI	GAANNNNTTC	2 cut(s)	331, 393
MseI	TTAA	3 cut(s)	120, 206, 243
MslI	CAYNNNNRTG	2 cut(s)	36, 98
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	333
NdeII	GATC	3 cut(s)	9, 85, 299
NlaIII	CATG	2 cut(s)	35, 97
NlaIV	GGNNCC	2 cut(s)	301, 411
PctI	GAATGC	1 cut(s)	333
PdmI	GAANNNNTTC	2 cut(s)	331, 393
PfeI	GAWTC	2 cut(s)	107, 140
PshBI	ATTAAT	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	301, 411
PspPI	GGNCC	1 cut(s)	410
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	3 cut(s)	70, 258, 364
RsaNI	GTAC	3 cut(s)	69, 257, 363
RseI	CAYNNNNRTG	2 cut(s)	36, 98
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	120, 206, 243
Sau3AI	GATC	3 cut(s)	9, 85, 299
Sau96I	GGNCC	1 cut(s)	410
SduI	GDGCHC	2 cut(s)	190, 376
SetI	ASST	3 cut(s)	70, 190, 258
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	2 cut(s)	36, 98
Sse9I	AATT	3 cut(s)	5, 117, 389
SsiI	CCGC	6 cut(s)	54, 179, 210, 224, 312, 336
SspI	AATATT	2 cut(s)	133, 230
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	190
TaiI	ACGT	2 cut(s)	70, 258
TaqI	TCGA	1 cut(s)	270
TasI	AATT	3 cut(s)	5, 117, 389
TfiI	GAWTC	2 cut(s)	107, 140
Tru1I	TTAA	3 cut(s)	120, 206, 243
Tru9I	TTAA	3 cut(s)	120, 206, 243
TspDTI	ATGAA	6 cut(s)	20, 116, 138, 185, 189, 261
TspGWI	ACGGA	2 cut(s)	34, 272
VpaK11BI	GGWCC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	120
XmnI	GAANNNNTTC	2 cut(s)	331, 393
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.