Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014290

Physical Location & Seq

Genomic Coordinates Forward (+)

74485 .. 74706

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCTACACAAACTGTTGAAGATAGTTCTAGATCTGGTCCAAGAAGCACTACTGTAGGGAAGTTATTGAAACCATTGAATTCCGAATATGGTAAAGTAGCTCCCGGATGGGGAACGACCCCTTTGATGGGTGTTGCAATGGCTCTATTTGCGGTATTCCTATCTATTATTTTGGAGATTTATAATTCTTCTGTTCTACTGGATGGAATTTCAGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009521 GO:0009523 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009654 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbH

Protein Analysis

73

Amino Acids

7.7

Weight (kDa)

6.04

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbH	PF00737	16 - 67	1.2e-31	Photosystem II 10 kDa phosphoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00710
malus_domestica	MD04G1032200.v1.1
prunus_persica	Prupe.7G021700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0125331 RchiOBHm_Chr2g0140191 RchiOBHm_Chr4g0390611 RchiOBHm_Chr6g0260481 RchiOBHm_CPg0501961
rosa_multiflora	Rmu_sc0002631.1_g000006
rosa_roxburghii	Rroxscaffold_2G00107500 Rroxscaffold_2G00151780 Rroxscaffold_5G00336580
rosa_samantha	Rh2CG305100 Rh2DG341400 Rh6CG170200
rosa_wichuraiana	Rw1G022260 Rw7G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AciI	CCGC	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	79, 207
AfiI	CCNNNNNNNGG	3 cut(s)	110, 127, 128
AgsI	TTSAA	3 cut(s)	20, 70, 79
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	79, 207
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	38
BccI	CCATC	3 cut(s)	102, 121, 197
BcnI	CCSGG	1 cut(s)	105
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	54
BglII	AGATCT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 127, 128
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	113, 208
BseLI	CCNNNNNNNGG	3 cut(s)	110, 127, 128
BseMI	GCAATG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	110, 127, 128
Bsp143I	GATC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	16, 55
BstF5I	GGATG	2 cut(s)	113, 208
BstKTI	GATC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	113, 208
BtsIMutI	CAGTG	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	38
CviJI	RGCY	3 cut(s)	5, 101, 143
CviKI_1	RGCY	3 cut(s)	5, 101, 143
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	79
FaiI	YATR	2 cut(s)	90, 183
FokI	GGATG	2 cut(s)	120, 215
FspBI	CTAG	1 cut(s)	30
HapII	CCGG	1 cut(s)	105
HpaII	CCGG	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	16, 55
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	3 cut(s)	21, 118, 185
MaeI	CTAG	1 cut(s)	30
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	2 cut(s)	32, 180
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	4 cut(s)	79, 184, 207, 217
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	32
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	54
SgeI	CNNG	6 cut(s)	42, 48, 54, 116, 117, 212
SinI	GGWCC	1 cut(s)	38
Sse9I	AATT	4 cut(s)	79, 184, 207, 217
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	16, 55
TasI	AATT	4 cut(s)	79, 184, 207, 217
TscAI	CASTG	1 cut(s)	219
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	2 cut(s)	79, 207
XbaI	TCTAGA	1 cut(s)	29
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.