Rh2DG341400

One of the components of the core complex of photosystem II (PSII), required for its stability and or assembly. PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
44396171 .. 44403932
7762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG341400.1

Sequence Viewer

Length: 339 bp
ATGGCTACACAAACCGTTGAGGGTAGTTCTAGATCTGGCCGCCCAAAACGAACTAATGCCGGAAGTTTATTCAAACCATTGAATTCAGAATATGGTAAAGTAGCTCCTGGTTGGGGAACTACTCCTTTGATGGGTCTTGAAATGGCTCTATTTGCAGAGGGTGAGAATGTCATGTCAACTAGTCAAAAGATTATTGGAGCCATAAACCCTGTAGAATCTGCCCTTGGAACCATCTGTGGTGATTTTGATGTTGATATTAGCAGGAAAATCATTTTTCATGGAAGTGAAGCAGTTGAGAGTTCAAGGAAGGCTATGTTCACTAGTTGCCTCTATGAGTAG

Protein Analysis

112

Amino Acids

11.97

Weight (kDa)

5.83

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbH PF00737 17 - 52 6.1e-17 Photosystem II 10 kDa phosphoprotein
NDK PF00334 48 - 103 1.1e-08 Nucleoside diphosphate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 113, 131
AgsI TTSAA 4 cut(s) 73, 82, 140, 303
AhlI ACTAGT 2 cut(s) 179, 320
AjnI CCWGG 1 cut(s) 106
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AoxI GGCC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 173, 251
BccI CCATC 2 cut(s) 124, 239
BciT130I CCWGG 1 cut(s) 108
BcuI ACTAGT 2 cut(s) 179, 320
BfaI CTAG 3 cut(s) 30, 180, 321
BfmI CTRYAG 1 cut(s) 210
BglII AGATCT 1 cut(s) 32
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 199, 229
BmrFI CCNGG 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 131
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 113, 131
BshFI GGCC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 113, 131
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 199, 229
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 16
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 1 cut(s) 39
CviAII CATG 2 cut(s) 172, 278
CviJI RGCY 6 cut(s) 5, 39, 104, 146, 200, 311
CviKI_1 RGCY 6 cut(s) 5, 39, 104, 146, 200, 311
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 175, 281
FaiI YATR 6 cut(s) 93, 173, 203, 279, 314, 333
FatI CATG 2 cut(s) 171, 277
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 3 cut(s) 30, 180, 321
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 60
Hin1II CATG 2 cut(s) 175, 281
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 173, 251
Hpy166II GTNNAC 2 cut(s) 177, 318
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 30, 137
Hpy8I GTNNAC 2 cut(s) 177, 318
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Hsp92II CATG 2 cut(s) 175, 281
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 2 cut(s) 109, 197
LpnPI CCDG 6 cut(s) 21, 73, 93, 120, 222, 247
MaeI CTAG 3 cut(s) 30, 180, 321
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MflI RGATCY 1 cut(s) 32
MluCI AATT 1 cut(s) 82
MnlI CCTC 3 cut(s) 13, 151, 338
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 32
NlaIII CATG 2 cut(s) 175, 281
NlaIV GGNNCC 2 cut(s) 199, 229
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 199, 229
PsuI RGATCY 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 282
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 108
SetI ASST 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 282
SpeI ACTAGT 2 cut(s) 179, 320
Sse9I AATT 1 cut(s) 82
SsiI CCGC 1 cut(s) 40
SspMI CTAG 3 cut(s) 30, 180, 321
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 16
TasI AATT 1 cut(s) 82
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 266
XapI RAATTY 1 cut(s) 82
XbaI TCTAGA 1 cut(s) 29
XspI CTAG 3 cut(s) 30, 180, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.