RchiOBHm_Chr6g0260481

One of the components of the core complex of photosystem II (PSII), required for its stability and or assembly. PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014290
Physical Location & Seq
Forward (+)
15435795 .. 15436019
225 bp
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UTR
Exon/CDS
Intron
PRQ23359

Sequence Viewer

Length: 225 bp
ATGGCTACACAAACCGTTGAGGGAAGTTCTAGATCTGGCCGCCCAAAACAAACTAATGCTGGGAGTTTATTGAAACCATTGAATTCAGAATATGGTAAAGTAGCTCCCAGTTGGGGAACTACTCCTTTGATGGGTCTTGCAATGGCTCTATTTGCAGTATTTCTATCTATTATTTTGGAGATTTATAATTCTTCCATTTTACTGGATGGAATTTCAATGAATTAG

Protein Analysis

74

Amino Acids

7.85

Weight (kDa)

8.14

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbH PF00737 17 - 68 1.5e-29 Photosystem II 10 kDa phosphoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AciI CCGC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 2 cut(s) 82, 210
AfiI CCNNNNNNNGG 2 cut(s) 113, 131
AgsI TTSAA 3 cut(s) 73, 82, 216
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AoxI GGCC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 82, 210
BccI CCATC 2 cut(s) 124, 200
BfaI CTAG 1 cut(s) 30
BglII AGATCT 1 cut(s) 32
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmrI ACTGGG 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 131
Bse1I ACTGG 2 cut(s) 108, 207
Bse3DI GCAATG 1 cut(s) 147
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 113, 131
BseMI GCAATG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 108, 207
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 113, 131
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 2 cut(s) 108, 207
BssMI GATC 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 16
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 32
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 211
CviJI RGCY 4 cut(s) 5, 39, 104, 146
CviKI_1 RGCY 4 cut(s) 5, 39, 104, 146
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 82
FaiI YATR 2 cut(s) 93, 186
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 40
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 140, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 4 cut(s) 21, 45, 121, 188
MaeI CTAG 1 cut(s) 30
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 1 cut(s) 183
MflI RGATCY 1 cut(s) 32
MluCI AATT 4 cut(s) 82, 187, 210, 220
MnlI CCTC 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 32
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 32
SetI ASST 1 cut(s) 106
SgeI CNNG 6 cut(s) 42, 48, 72, 120, 149, 215
Sse9I AATT 4 cut(s) 82, 187, 210, 220
SsiI CCGC 1 cut(s) 40
SspMI CTAG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 16
TasI AATT 4 cut(s) 82, 187, 210, 220
TauI GCSGC 1 cut(s) 42
XapI RAATTY 2 cut(s) 82, 210
XbaI TCTAGA 1 cut(s) 29
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.