Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014290

Physical Location & Seq

Genomic Coordinates Reverse (-)

38929509 .. 38929787

Gene Structure 279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGAGAAGCACATGTAGACTTGAGGATGAGAATGTCATGTCAACTAGTCAAAAGATTATTGGAGCCACAAACCCTGTAGAATCTGCCCTTGGAACCATCTGTGGTGATTTTGATATTGATATTGGCAGGAAAATCATTTTTCATGGAAGTGAAGCAGTTGAGAGTTCAAGGAAAGAGATGGAACTGTGGTTCCTGATAAGAGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009636 GO:0009987 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0033554 GO:0034599 GO:0034614 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050896 GO:0051716 GO:0055086 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

69

Amino Acids

7.78

Weight (kDa)

4.97

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	6 - 64	4e-12	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00710
malus_domestica	MD04G1032200.v1.1
prunus_persica	Prupe.7G021700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0125331 RchiOBHm_Chr2g0140191 RchiOBHm_Chr4g0390611 RchiOBHm_Chr6g0260481 RchiOBHm_CPg0501961
rosa_multiflora	Rmu_sc0002631.1_g000006
rosa_roxburghii	Rroxscaffold_2G00107500 Rroxscaffold_2G00151780 Rroxscaffold_5G00336580
rosa_samantha	Rh2CG305100 Rh2DG341400 Rh6CG170200
rosa_wichuraiana	Rw1G022260 Rw7G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	168
AhlI	ACTAGT	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AloI	GAACNNNNNNTCC	4 cut(s)	173, 174, 205, 206
AsuHPI	GGTGA	1 cut(s)	116
BccI	CCATC	2 cut(s)	104, 172
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	64, 94, 191
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	64, 94, 191
BssECI	CCNNGG	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	31
CviAII	CATG	3 cut(s)	12, 37, 143
CviJI	RGCY	1 cut(s)	65
CviKI_1	RGCY	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	15, 40, 146
FaiI	YATR	3 cut(s)	13, 38, 144
FatI	CATG	3 cut(s)	11, 36, 142
FblI	GTMKAC	1 cut(s)	16
FokI	GGATG	1 cut(s)	38
FspBI	CTAG	1 cut(s)	45
Hin1II	CATG	3 cut(s)	15, 40, 146
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	80
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	17, 42
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	2 cut(s)	17, 42
HpyCH4III	ACNGT	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	15, 40, 146
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	3 cut(s)	87, 112, 206
MaeI	CTAG	1 cut(s)	45
MnlI	CCTC	1 cut(s)	16
MseI	TTAA	1 cut(s)	208
MslI	CAYNNNNRTG	1 cut(s)	147
NlaIII	CATG	3 cut(s)	15, 40, 146
NlaIV	GGNNCC	3 cut(s)	64, 94, 191
NspI	RCATGY	1 cut(s)	15
PciI	ACATGT	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	80
PscI	ACATGT	1 cut(s)	11
PspN4I	GGNNCC	3 cut(s)	64, 94, 191
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SpeI	ACTAGT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	208
Tru9I	TTAA	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	131
XceI	RCATGY	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.