Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014290

Physical Location & Seq

Genomic Coordinates Reverse (-)

47118890 .. 47119114

Gene Structure 225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCTACACAAACCGTTGAGGGTAGTTCTAGATCTGGCCACCCAAAACGAACTAATGCCGGGAGTTTATTGAAACCATTGAATTCAGAATATGGTAAAATAGCTCCTGGTTGGGGAACTACTCCTTTGATGGGTCTTGCAATGGCTCTATTTGCAGTATTTCTATCTATTATTTTGGAGATTTATAATTCTTCCATTTTACTGGATGGAATTTCAATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009521 GO:0009523 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009654 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbH

Protein Analysis

74

Amino Acids

7.84

Weight (kDa)

8.16

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbH	PF00737	17 - 68	3.3e-30	Photosystem II 10 kDa phosphoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00710
malus_domestica	MD04G1032200.v1.1
prunus_persica	Prupe.7G021700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0125331 RchiOBHm_Chr2g0140191 RchiOBHm_Chr4g0390611 RchiOBHm_Chr6g0260481 RchiOBHm_CPg0501961
rosa_multiflora	Rmu_sc0002631.1_g000006
rosa_roxburghii	Rroxscaffold_2G00107500 Rroxscaffold_2G00151780 Rroxscaffold_5G00336580
rosa_samantha	Rh2CG305100 Rh2DG341400 Rh6CG170200
rosa_wichuraiana	Rw1G022260 Rw7G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	2 cut(s)	82, 210
AfiI	CCNNNNNNNGG	2 cut(s)	113, 131
AgsI	TTSAA	3 cut(s)	73, 82, 216
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	2 cut(s)	82, 210
AsuC2I	CCSGG	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	39
BccI	CCATC	2 cut(s)	124, 200
BciT130I	CCWGG	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	1 cut(s)	30
BglII	AGATCT	1 cut(s)	32
Bme1390I	CCNGG	2 cut(s)	61, 108
BmrFI	CCNGG	2 cut(s)	61, 108
BpuMI	CCSGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 131
Bse1I	ACTGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	113, 131
BseMI	GCAATG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	113, 131
BsnI	GGCC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	2 cut(s)	59, 106
BstX2I	RGATCY	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	211
CviJI	RGCY	4 cut(s)	5, 39, 104, 146
CviKI_1	RGCY	4 cut(s)	5, 39, 104, 146
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	106
FaiI	YATR	2 cut(s)	93, 186
FokI	GGATG	1 cut(s)	218
FspBI	CTAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	60
HpaII	CCGG	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	2 cut(s)	140, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	21, 73, 93, 120, 188
MaeI	CTAG	1 cut(s)	30
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	1 cut(s)	183
MflI	RGATCY	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	4 cut(s)	82, 187, 210, 220
MluNI	TGGCCA	1 cut(s)	39
MnlI	CCTC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	39
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	61, 108
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	61, 108
SetI	ASST	1 cut(s)	106
SgeI	CNNG	8 cut(s)	42, 48, 72, 73, 119, 120, 149, 215
Sse9I	AATT	4 cut(s)	82, 187, 210, 220
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	59, 106
TaaI	ACNGT	1 cut(s)	16
TasI	AATT	4 cut(s)	82, 187, 210, 220
XapI	RAATTY	2 cut(s)	82, 210
XbaI	TCTAGA	1 cut(s)	29
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.