Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002631.1

Orthogroup ID

OG0014290

Physical Location & Seq

Genomic Coordinates Reverse (-)

25811 .. 26599

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002631.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggcaactaatgggatgttagtagtgcctatgggaattgaaaccaatgagatgtcagtgcatatggaagaggatgagaatgtcatgtcaactagtcaaaagattattggagccacaaaccctgtagaatctgcccttggaaccatctgtggtgattttgatattgatattggcaggaaaatcagttttcatggaagtgaagcagttgagagttcaaggaaagagatggaactgtggaatcccagtcaacgcatgaatcctgatgaggctagtaaacctgaaggcattaggagacaaaatgatgacgtgggagatggagctgaaatgaagaaatggagttttcctggtccgactaggaatcccagtcaacgcaggaatcctgatgaggctaggaaacctgaagacattaggagaccacatgatgacgttggagatattttgggagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009636 GO:0009987 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0033554 GO:0034599 GO:0034614 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050896 GO:0051716 GO:0055086 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0097237 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

149

Amino Acids

16.57

Weight (kDa)

4.72

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00710
malus_domestica	MD04G1032200.v1.1
prunus_persica	Prupe.7G021700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0125331 RchiOBHm_Chr2g0140191 RchiOBHm_Chr4g0390611 RchiOBHm_Chr6g0260481 RchiOBHm_CPg0501961
rosa_multiflora	Rmu_sc0002631.1_g000006
rosa_roxburghii	Rroxscaffold_2G00107500 Rroxscaffold_2G00151780 Rroxscaffold_5G00336580
rosa_samantha	Rh2CG305100 Rh2DG341400 Rh6CG170200
rosa_wichuraiana	Rw1G022260 Rw7G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	300, 420
AgsI	TTSAA	2 cut(s)	41, 216
AhlI	ACTAGT	1 cut(s)	92
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw26I	GTCTC	2 cut(s)	286, 406
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	408
BccI	CCATC	3 cut(s)	152, 220, 308
BciT130I	CCWGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	286, 406
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	4 cut(s)	93, 270, 354, 390
BfmI	CTRYAG	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	347
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	112, 142
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	2 cut(s)	237, 357
BmuI	ACTGGG	2 cut(s)	237, 357
BpiI	GAAGAC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	243, 363
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	2 cut(s)	21, 79
BseNI	ACTGG	2 cut(s)	243, 363
BsmAI	GTCTC	2 cut(s)	286, 406
Bso31I	GGTCTC	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	112, 142
BspTNI	GGTCTC	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	243, 363
BssECI	CCNNGG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	21, 79
BstMAI	GTCTC	2 cut(s)	286, 406
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	21, 79
BtsIMutI	CAGTG	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	347
CviAII	CATG	4 cut(s)	85, 191, 253, 419
CviJI	RGCY	4 cut(s)	113, 269, 320, 389
CviKI_1	RGCY	4 cut(s)	113, 269, 320, 389
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	2 cut(s)	300, 420
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	4 cut(s)	88, 194, 256, 422
FaiI	YATR	7 cut(s)	32, 63, 65, 86, 192, 254, 420
FatI	CATG	4 cut(s)	84, 190, 252, 418
FauNDI	CATATG	1 cut(s)	63
FokI	GGATG	2 cut(s)	28, 86
FspBI	CTAG	4 cut(s)	93, 270, 354, 390
Hin1II	CATG	4 cut(s)	88, 194, 256, 422
HincII	GTYRAC	3 cut(s)	90, 248, 368
HindII	GTYRAC	3 cut(s)	90, 248, 368
HinfI	GANTC	5 cut(s)	128, 238, 256, 358, 376
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	4 cut(s)	90, 248, 275, 368
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	2 cut(s)	260, 380
Hpy8I	GTNNAC	4 cut(s)	90, 248, 275, 368
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	2 cut(s)	306, 426
HpyCH4V	TGCA	1 cut(s)	61
HpySE526I	ACGT	2 cut(s)	306, 426
Hsp92II	CATG	4 cut(s)	88, 194, 256, 422
LmnI	GCTCC	2 cut(s)	110, 317
MaeI	CTAG	4 cut(s)	93, 270, 354, 390
MaeII	ACGT	2 cut(s)	306, 426
MboII	GAAGA	3 cut(s)	80, 340, 413
MluCI	AATT	1 cut(s)	36
MmeI	TCCRAC	2 cut(s)	374, 409
MnlI	CCTC	3 cut(s)	64, 259, 379
MseI	TTAA	1 cut(s)	448
MslI	CAYNNNNRTG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	63
NlaIII	CATG	4 cut(s)	88, 194, 256, 422
NlaIV	GGNNCC	2 cut(s)	112, 142
PfeI	GAWTC	5 cut(s)	128, 238, 256, 358, 376
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	112, 142
PspPI	GGNCC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	448
Sau96I	GGNCC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	345
SetI	ASST	5 cut(s)	280, 309, 322, 400, 429
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	195
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	1 cut(s)	36
SspMI	CTAG	4 cut(s)	93, 270, 354, 390
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	2 cut(s)	309, 429
TasI	AATT	1 cut(s)	36
TfiI	GAWTC	5 cut(s)	128, 238, 256, 358, 376
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	3 cut(s)	179, 269, 341
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	347
XspI	CTAG	4 cut(s)	93, 270, 354, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.