Rroxscaffold_5G00336580

One of the components of the core complex of photosystem II (PSII), required for its stability and or assembly. PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014290
Physical Location & Seq
Reverse (-)
4404934 .. 4405396
463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336580.1

Sequence Viewer

Length: 225 bp
ATGGCAATACAAACCGTTGAGGGTAGTTCTAGATCTGGCCGCCCAAAACGAATTAATGCCGGGAGTTTATTGAAACCATTGAATTCAGAATATGGTTTAGTAGCTCCTGGTTGGGGAACTACTCCTTTGATGGGTCTTGCAATGGCTCTATTTGCAGTATTTCTATCTATTATTTTGGAGATTTATAATTCTTCCATTTTATTGGATGGAATTTCAATGAATTAG

Protein Analysis

74

Amino Acids

7.85

Weight (kDa)

8.19

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbH PF00737 20 - 68 6.3e-28 Photosystem II 10 kDa phosphoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AciI CCGC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 2 cut(s) 82, 210
AfiI CCNNNNNNNGG 2 cut(s) 113, 131
AgsI TTSAA 3 cut(s) 73, 82, 216
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AoxI GGCC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 82, 210
AseI ATTAAT 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 61
BccI CCATC 2 cut(s) 124, 200
BciT130I CCWGG 1 cut(s) 108
BcnI CCSGG 1 cut(s) 61
BfaI CTAG 1 cut(s) 30
BglII AGATCT 1 cut(s) 32
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 61, 108
BmrFI CCNGG 2 cut(s) 61, 108
BpuMI CCSGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 131
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 113, 131
BseMI GCAATG 1 cut(s) 147
BshFI GGCC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 113, 131
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 147
BssMI GATC 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 16
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 2 cut(s) 59, 106
BstX2I RGATCY 1 cut(s) 32
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 211
CviJI RGCY 3 cut(s) 39, 104, 146
CviKI_1 RGCY 3 cut(s) 39, 104, 146
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 106
FaiI YATR 2 cut(s) 93, 186
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 60
HpaII CCGG 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 140, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 4 cut(s) 21, 73, 93, 120
MaeI CTAG 1 cut(s) 30
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 1 cut(s) 183
MflI RGATCY 1 cut(s) 32
MluCI AATT 5 cut(s) 51, 82, 187, 210, 220
MnlI CCTC 1 cut(s) 13
MseI TTAA 1 cut(s) 54
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 61, 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 41
PshBI ATTAAT 1 cut(s) 54
PsiI TTATAA 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 32
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 32
ScrFI CCNGG 2 cut(s) 61, 108
SetI ASST 1 cut(s) 106
SgeI CNNG 7 cut(s) 42, 48, 72, 73, 119, 120, 149
Sse9I AATT 5 cut(s) 51, 82, 187, 210, 220
SsiI CCGC 1 cut(s) 40
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 2 cut(s) 59, 106
TaaI ACNGT 1 cut(s) 16
TasI AATT 5 cut(s) 51, 82, 187, 210, 220
TauI GCSGC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 2 cut(s) 82, 210
XbaI TCTAGA 1 cut(s) 29
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.