ATMG00300

GAG-pre-integrase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0008929
Physical Location & Seq
Reverse (-)
89617 .. 90054
438 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00300.1

Sequence Viewer

Length: 438 bp
ATGCGCAAAGGAGAGAGAATGCTAGCAACTTCGAAAGAATGGGAAAGGCCCCGGCCCGTTGAAGCAAGTTGTAGTGAAGGAGTTCTGAAGGTTCTTAAAGGATGCAGAACAATACTGAAAGGGAACAGACATGATTCACTTTACATTCTTCAAGGCTCTGTTGAAACAGGAGAGTCTAACCTTGCAGAAACAGCTAAGGATGAGACAAGGCTTTGGCACAGTAGGCTTGCACATATGAGCCAAAGAGGAATGGAGTTACTGGTCAAGAAAGGTTTCCTAGATAGCAGCAAGGTTTCAAGTCTCAAATTTTGTGAAGATTGCATCTATGGAAAGACACATAGAGTGAATTTCTCTACGGGCCAGCACACTACTAAGAATCCTCTGGATTATGTGCATTCAGATTTATGGGGAGCACCTTCAGTCCCATTATCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
gag_pre-integrs

Protein Analysis

145

Amino Acids

16.35

Weight (kDa)

9.12

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag_pre-integrs PF13976 47 - 111 7.6e-19 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AcsI RAATTY 2 cut(s) 305, 346
AcuI CTGAAG 2 cut(s) 107, 402
AgsI TTSAA 4 cut(s) 62, 152, 164, 297
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 2 cut(s) 197, 305
AoxI GGCC 3 cut(s) 47, 53, 358
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 2 cut(s) 305, 346
Asp700I GAANNNNTTC 2 cut(s) 81, 272
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 48, 54, 358
AsuC2I CCSGG 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 32
AsuNHI GCTAGC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 415
BbvI GCAGC 1 cut(s) 297
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 197, 305
BfaI CTAG 2 cut(s) 23, 278
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 48, 54, 358
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 2 cut(s) 92, 330
BmtI GCTAGC 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 107, 205
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 297
BshFI GGCC 3 cut(s) 49, 55, 360
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 197, 305
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 2 cut(s) 24, 394
BsnI GGCC 3 cut(s) 49, 55, 360
Bsp119I TTCGAA 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 415
BspANI GGCC 3 cut(s) 49, 55, 360
BspLI GGNNCC 1 cut(s) 50
BspOI GCTAGC 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 32
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 24, 228, 362
BstDEI CTNAG 2 cut(s) 195, 372
BstF5I GGATG 2 cut(s) 107, 205
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 197, 305
BstMWI GCNNNNNNNGC 2 cut(s) 191, 223
BstSCI CCNGG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 49, 55, 360
BtsCI GGATG 2 cut(s) 107, 205
Cac8I GCNNGC 3 cut(s) 24, 228, 362
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 48, 54, 358
CviAII CATG 1 cut(s) 131
CviJI RGCY 8 cut(s) 49, 55, 156, 194, 211, 226, 240, 360
CviKI_1 RGCY 8 cut(s) 49, 55, 156, 194, 211, 226, 240, 360
DdeI CTNAG 2 cut(s) 195, 372
Eco57I CTGAAG 2 cut(s) 107, 402
EcoO109I RGGNCCY 1 cut(s) 48
FaeI CATG 1 cut(s) 134
FaiI YATR 7 cut(s) 132, 234, 236, 327, 339, 390, 406
FaqI GGGAC 1 cut(s) 407
FatI CATG 1 cut(s) 130
FauNDI CATATG 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 2 cut(s) 114, 212
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 2 cut(s) 23, 278
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 286
HaeIII GGCC 3 cut(s) 49, 55, 360
HapII CCGG 1 cut(s) 52
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 3 cut(s) 134, 173, 376
HpaII CCGG 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 87, 400
Hpy188III TCNNGA 2 cut(s) 265, 383
HpyAV CCTTC 3 cut(s) 71, 82, 426
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 5 cut(s) 105, 185, 230, 321, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 223
HpyF3I CTNAG 2 cut(s) 195, 372
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 5 cut(s) 65, 153, 245, 368, 374
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 92, 330
MaeI CTAG 2 cut(s) 23, 278
MaeIII GTNAC 1 cut(s) 255
MboII GAAGA 2 cut(s) 140, 326
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 2 cut(s) 305, 346
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 2 cut(s) 239, 390
MroXI GAANNNNTTC 2 cut(s) 81, 272
MseI TTAA 1 cut(s) 96
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 52
Mva1269I GAATGC 2 cut(s) 24, 394
MwoI GCNNNNNNNGC 2 cut(s) 191, 223
NciI CCSGG 1 cut(s) 52
NdeI CATATG 1 cut(s) 234
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 50
NsbI TGCGCA 1 cut(s) 5
NspV TTCGAA 1 cut(s) 32
PctI GAATGC 2 cut(s) 24, 394
PdmI GAANNNNTTC 2 cut(s) 81, 272
PfeI GAWTC 2 cut(s) 134, 376
PkrI GCNGC 1 cut(s) 287
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 3 cut(s) 48, 54, 358
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 286
Sau96I GGNCC 3 cut(s) 48, 54, 358
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 1 cut(s) 415
SetI ASST 6 cut(s) 93, 183, 196, 274, 294, 418
SfaNI GCATC 2 cut(s) 92, 330
SfuI TTCGAA 1 cut(s) 32
Sse9I AATT 2 cut(s) 305, 346
SspMI CTAG 2 cut(s) 23, 278
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 32
TasI AATT 2 cut(s) 305, 346
TfiI GAWTC 2 cut(s) 134, 376
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 1 cut(s) 285
XapI RAATTY 2 cut(s) 305, 346
XmnI GAANNNNTTC 2 cut(s) 81, 272
XspI CTAG 2 cut(s) 23, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.