FvH4_6g44103

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008929
Physical Location & Seq
Reverse (-)
34003908 .. 34004393
486 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44103.t1

Sequence Viewer

Length: 477 bp
ATGGAAAAAGAAAGGAGCATGAGATTTCATGCAGGGTTGCCTGAAGAGTTTTGGGCAGAAGCGGCTAATCATGCATGTTATTTGATTAACCGATCACCTTCTAGGGCTATTAATTTCAAGTGTGCAGAAGAGGTATGGTCTGGAAAACCGGTTGATTATTCCAACTTAAGGGTGTTTGGTTGCAGTGCTTATGCACATATTCCCAAAGACGAAAGAACCAAGCTTGAACCTAAGTCTCTTGAATGCTTGTTCATCGGCTTCGAGAAAGGAGTAAAAGGTTATAAGTTGTGGGATATAGTCAATGAGAAAAAGGTGATCAGCAGAGACGTTGTTTTTGATGAAAAGACCATGCCATTAAATGAAGAAGCTAATAGCAAGAAGGGGCAGACGGCTGTTGATGAAGAAGAAGCAATCAGTATTTCATTAGCTAAACCATCAGTTGCAGATTCCAAAGCTCAGGTGGAGCAAATTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC PAH

Protein Analysis

159

Amino Acids

17.9

Weight (kDa)

5.55

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 61 - 122 1.1e-23 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AciI CCGC 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 168
AflII CTTAAG 1 cut(s) 166
AgeI ACCGGT 1 cut(s) 148
AgsI TTSAA 3 cut(s) 118, 227, 242
AluBI AGCT 4 cut(s) 223, 368, 428, 455
AluI AGCT 4 cut(s) 223, 368, 428, 455
Alw26I GTCTC 2 cut(s) 240, 318
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AseI ATTAAT 1 cut(s) 111
AsiGI ACCGGT 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 87, 325
BccI CCATC 1 cut(s) 442
BceAI ACGGC 1 cut(s) 405
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 240, 318
BfaI CTAG 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 166
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 470
BsgI GTGCAG 1 cut(s) 144
BshTI ACCGGT 1 cut(s) 148
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 2 cut(s) 240, 318
BsmBI CGTCTC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 92, 315
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 469
BspTI CTTAAG 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 148
BssMI GATC 2 cut(s) 92, 315
Bst6I CTCTTC 2 cut(s) 39, 123
BstAFI CTTAAG 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 231, 456
BstKTI GATC 2 cut(s) 95, 318
BstMAI GTCTC 2 cut(s) 240, 318
BstMBI GATC 2 cut(s) 92, 315
BstMWI GCNNNNNNNGC 2 cut(s) 62, 71
BstNSI RCATGY 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 148
CspAI ACCGGT 1 cut(s) 148
CviAII CATG 5 cut(s) 19, 29, 71, 75, 349
CviJI RGCY 8 cut(s) 65, 107, 223, 258, 368, 392, 428, 455
CviKI_1 RGCY 8 cut(s) 65, 107, 223, 258, 368, 392, 428, 455
DdeI CTNAG 2 cut(s) 231, 456
DpnI GATC 2 cut(s) 94, 317
DpnII GATC 2 cut(s) 92, 315
Eam1104I CTCTTC 2 cut(s) 39, 123
EarI CTCTTC 2 cut(s) 39, 123
Eco57I CTGAAG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 5 cut(s) 22, 32, 74, 78, 352
FatI CATG 5 cut(s) 18, 28, 70, 74, 348
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 102
GluI GCNGC 1 cut(s) 63
HapII CCGG 1 cut(s) 149
Hin1II CATG 5 cut(s) 22, 32, 74, 78, 352
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 446
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 87, 325
Hpy188III TCNNGA 3 cut(s) 141, 239, 262
HpyAV CCTTC 2 cut(s) 108, 373
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 6 cut(s) 32, 74, 125, 183, 194, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 71
HpyF3I CTNAG 2 cut(s) 231, 456
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 5 cut(s) 22, 32, 74, 78, 352
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 2 cut(s) 92, 315
LmnI GCTCC 2 cut(s) 15, 463
LpnPI CCDG 5 cut(s) 18, 54, 126, 162, 443
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 327
MalI GATC 2 cut(s) 94, 317
MboI GATC 2 cut(s) 92, 315
MboII GAAGA 5 cut(s) 56, 140, 374, 413, 416
MluCI AATT 2 cut(s) 112, 468
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 1 cut(s) 124
Mph1103I ATGCAT 1 cut(s) 76
MseI TTAA 4 cut(s) 87, 111, 167, 356
MspCI CTTAAG 1 cut(s) 166
MspI CCGG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 62, 71
NdeII GATC 2 cut(s) 92, 315
NlaIII CATG 5 cut(s) 22, 32, 74, 78, 352
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 1 cut(s) 78
PctI GAATGC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 446
PinAI ACCGGT 1 cut(s) 148
PkrI GCNGC 1 cut(s) 64
PshBI ATTAAT 1 cut(s) 111
PsiI TTATAA 1 cut(s) 282
SaqAI TTAA 4 cut(s) 87, 111, 167, 356
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 92, 315
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 2 cut(s) 112, 468
SsiI CCGC 1 cut(s) 62
SspMI CTAG 1 cut(s) 102
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 261
TasI AATT 2 cut(s) 112, 468
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 4 cut(s) 87, 111, 167, 356
Tru9I TTAA 4 cut(s) 87, 111, 167, 356
TscAI CASTG 1 cut(s) 190
TspDTI ATGAA 6 cut(s) 17, 241, 354, 375, 411, 414
TspRI CASTG 1 cut(s) 190
Vha464I CTTAAG 1 cut(s) 166
VspI ATTAAT 1 cut(s) 111
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XspI CTAG 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.