FvH4_4g08662

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008929
Physical Location & Seq
Forward (+)
9208720 .. 9210467
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08662.t1

Sequence Viewer

Length: 726 bp
ATGTCAGAGGCAAGGAGAGAGGAAGGTCAAGGAATAGAGGTGGTGGATTTCAAGGAAGGGCCAGGTCTAAATCCAAGGGAAAAGGCAAAGAAAAGAAAGATGGTTGCTTCGTATGTGGTTCACCCGACCACTGGAAAAGGAATTGCAAACAATGGAAGGAGAAGAAGGCGCAGATGTCAAGAGAAAGCTCCCAGGTTGCCTGAAGAGTTTTGGGCAGAAGCGGCTAATCATGCATGTTATTTGATTAACCGATCACCTTCTAGGGCTATTAATTTCAAGTGTGCAGAGGAGGTATGGTCTGGAAAACCGGTTGATTATTCCAACTTAAGGGTGTTTGGTTGCAGTGCTTATGCACATATTCCCAAAGACGAAAGAACCAAGCTGGAACCTAAGTCTCTTGAATGCTTGTTCATCGGCTTCGAGAAAGGAGTAAAAGGTTATAAGTTGTGGGATATAGTCAATGAGAAAAAGGTGATCAGCAGAGACGTTGTCTTTGATGAAAAGACCATGCCATTAAATGAAGAAGCTAATAGCAAGAAGGGGCAGATGGCTGTTGATGAAGGAGAAGCAATCAGTATTTCATTAGCTAAACCATCAGTTGCAGATTCCGAAGCTCAGGTGGAGCAAATTGAGCAAGGGAATGATGAATTAGCTATTGAGGAACCAGAGCATCAACAACAACCAACCGTTATGGCTCAGGTGGAGCAATCTCCACAAAGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC PAH

Protein Analysis

242

Amino Acids

27.16

Weight (kDa)

6.49

Isoelectric Point (pI)

63.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 114 - 175 2.5e-23 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
AciI CCGC 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 222
AfiI CCNNNNNNNGG 3 cut(s) 131, 327, 719
AflII CTTAAG 1 cut(s) 325
AgeI ACCGGT 1 cut(s) 307
AgsI TTSAA 3 cut(s) 52, 277, 401
AjnI CCWGG 2 cut(s) 61, 191
AluBI AGCT 6 cut(s) 188, 382, 527, 587, 614, 653
AluI AGCT 6 cut(s) 188, 382, 527, 587, 614, 653
Alw26I GTCTC 2 cut(s) 399, 477
AoxI GGCC 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AseI ATTAAT 1 cut(s) 270
AsiGI ACCGGT 1 cut(s) 307
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 3 cut(s) 113, 246, 484
BccI CCATC 3 cut(s) 94, 541, 601
BciT130I CCWGG 2 cut(s) 63, 193
BclI TGATCA 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 399, 477
BfaI CTAG 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 325
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 63, 193
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 387, 663
BmrFI CCNGG 2 cut(s) 63, 193
BmsI GCATC 1 cut(s) 679
Bpu10I CCTNAGC 2 cut(s) 615, 696
BsaJI CCNNGG 2 cut(s) 74, 191
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 327, 719
Bse118I RCCGGY 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 2 cut(s) 63, 193
BseDI CCNNGG 2 cut(s) 74, 191
BseLI CCNNNNNNNGG 3 cut(s) 131, 327, 719
BseMII CTCAG 2 cut(s) 629, 710
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 1 cut(s) 61
BshTI ACCGGT 1 cut(s) 307
BsiSI CCGG 1 cut(s) 308
BslI CCNNNNNNNGG 3 cut(s) 131, 327, 719
BsmAI GTCTC 2 cut(s) 399, 477
BsmBI CGTCTC 1 cut(s) 477
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 251, 474
BspACI CCGC 1 cut(s) 221
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 2 cut(s) 628, 709
BspLI GGNNCC 2 cut(s) 387, 663
BspTI CTTAAG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 307
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 74, 191
BssMI GATC 2 cut(s) 251, 474
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 63, 193
Bst4CI ACNGT 1 cut(s) 688
Bst6I CTCTTC 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 325
BstDEI CTNAG 3 cut(s) 390, 615, 696
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 254, 477
BstMAI GTCTC 2 cut(s) 399, 477
BstMBI GATC 2 cut(s) 251, 474
BstMWI GCNNNNNNNGC 3 cut(s) 221, 230, 631
BstNI CCWGG 2 cut(s) 63, 193
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 61, 191
BsuRI GGCC 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 129, 349
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 59
CspAI ACCGGT 1 cut(s) 307
CviAII CATG 3 cut(s) 230, 234, 508
DdeI CTNAG 3 cut(s) 390, 615, 696
DpnI GATC 2 cut(s) 253, 476
DpnII GATC 2 cut(s) 251, 474
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 61, 191
EcoT14I CCWWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 74
Esp3I CGTCTC 1 cut(s) 477
FaeI CATG 3 cut(s) 233, 237, 511
FatI CATG 3 cut(s) 229, 233, 507
FbaI TGATCA 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 308
HhaI GCGC 1 cut(s) 171
Hin1II CATG 3 cut(s) 233, 237, 511
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 1 cut(s) 605
HpaII CCGG 1 cut(s) 308
HphI GGTGA 3 cut(s) 113, 246, 484
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 7, 610
Hpy188III TCNNGA 4 cut(s) 179, 300, 398, 421
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 7 cut(s) 17, 50, 150, 159, 267, 532, 554
HpyCH4III ACNGT 1 cut(s) 688
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 6 cut(s) 146, 233, 284, 342, 353, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 230, 631
HpyF3I CTNAG 3 cut(s) 390, 615, 696
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 3 cut(s) 233, 237, 511
HspAI GCGC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 2 cut(s) 251, 474
LmnI GCTCC 3 cut(s) 193, 622, 703
LweI GCATC 1 cut(s) 679
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 486
MalI GATC 2 cut(s) 253, 476
MboI GATC 2 cut(s) 251, 474
MboII GAAGA 3 cut(s) 174, 215, 533
MluCI AATT 4 cut(s) 141, 271, 627, 647
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 6 cut(s) 13, 31, 280, 283, 652, 713
Mph1103I ATGCAT 1 cut(s) 235
MseI TTAA 4 cut(s) 246, 270, 326, 515
MspCI CTTAAG 1 cut(s) 325
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 2 cut(s) 63, 193
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 2 cut(s) 63, 193
MwoI GCNNNNNNNGC 3 cut(s) 221, 230, 631
NdeII GATC 2 cut(s) 251, 474
NlaIII CATG 3 cut(s) 233, 237, 511
NlaIV GGNNCC 2 cut(s) 387, 663
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 237
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 605
PflFI GACNNNGTC 1 cut(s) 488
PinAI ACCGGT 1 cut(s) 307
PkrI GCNGC 1 cut(s) 223
PshBI ATTAAT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 61, 191
PspGI CCWGG 2 cut(s) 61, 191
PspN4I GGNNCC 2 cut(s) 387, 663
PspPI GGNCC 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 488
SaqAI TTAA 4 cut(s) 246, 270, 326, 515
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 2 cut(s) 251, 474
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 63, 193
SfaNI GCATC 1 cut(s) 679
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 4 cut(s) 141, 271, 627, 647
SsiI CCGC 1 cut(s) 221
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 61, 191
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 688
TaiI ACGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 420
TasI AATT 4 cut(s) 141, 271, 627, 647
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 4 cut(s) 246, 270, 326, 515
Tru9I TTAA 4 cut(s) 246, 270, 326, 515
TscAI CASTG 2 cut(s) 136, 349
TspDTI ATGAA 6 cut(s) 400, 513, 534, 570, 573, 660
TspRI CASTG 2 cut(s) 136, 349
Tth111I GACNNNGTC 1 cut(s) 488
Vha464I CTTAAG 1 cut(s) 325
VspI ATTAAT 1 cut(s) 270
XceI RCATGY 1 cut(s) 237
XspI CTAG 1 cut(s) 261
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.