FvH4_6g48812

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008929
Physical Location & Seq
Reverse (-)
36681269 .. 36682156
888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48812.t1

Sequence Viewer

Length: 801 bp
ATGAAGGTCAAATGTCTGAGGTCGGACAATGGAGGAGAATACTATCGTAATGCCTTCAAAGAGTATTGTGCAGAGAATGAGATTAGGATGAAGAAGACAATTCCTGGGACTCCACAACAGAATGGAGTGGCTGAACGCATGAATAAGACTCTGAATGAGCGCGCAAGGATGCCATTAAATCATCTGTTACCTGAGGAAAAATGGAGCGGAAAAGAGATAGGCCTATCACACTTGAGAGTTTTTGGTTGTGTGGCATATGTTCACATTGAGTCCAATGCAAGAAGCAAGCTCGATCCTAAGTCTCGAAAGTGCATATTCATTGGCTATGGCGGTGATGAGTTTGGCTATAGATTTTGGGATATGCAAAGCAAGAAAGTAGTAAGGAGCCGAAATGTCATCTTTAATGAAGAGGTGATGTACAAGAATAGGCAAGCAGCAGAGCCTGAAAGTCCTGTAAGAAAAGATCAGCAGTTTGCAAGAATGGAAGAATTATCCGATGAAGATGTGTCTAAGGCAAGTCATGGGAAGGAACAACAACAAGAAGAAGCTCCTGAGGTCGCACAACCTGAAGAACAAGTTCCTAGTGATGAGCTAGTGACACCTCCTTTTGTGCCAAGAGTATCGTTGAGAAGTACTAAAGGTGTACCAGCTATTAGATACTCGCCTTGTGCTAACTATTTGCTGTTAATTGATTCTGGTGAACCCGTGAGTTATGATGAGGCAATGCAACATGAAGATTCTGCTAAGTGGGAGAGTGCTATGCAAGATGAGATGGACTCTCTCATGTCCAACAATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

267

Amino Acids

30.49

Weight (kDa)

5.58

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 83 - 145 8.1e-26 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 207
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 207, 330
AclWI GGATC 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 3 cut(s) 419, 634, 645
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 4 cut(s) 289, 548, 592, 650
AluI AGCT 4 cut(s) 289, 548, 592, 650
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 1 cut(s) 287
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 434
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 2 cut(s) 162, 164
AsuHPI GGTGA 3 cut(s) 344, 424, 710
AxyI CCTNAGG 2 cut(s) 192, 552
BbsI GAAGAC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 446
BccI CCATC 1 cut(s) 766
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 2 cut(s) 582, 593
BfmI CTRYAG 1 cut(s) 346
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 101
BplI GAGNNNNNCTC 2 cut(s) 761, 793
BpuEI CTTGAG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 104
Bse21I CCTNAGG 2 cut(s) 192, 552
Bse3DI GCAATG 1 cut(s) 729
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 93, 174
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 3 cut(s) 8, 183, 543
BsePI GCGCGC 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 222
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 2 cut(s) 292, 463
BspACI CCGC 2 cut(s) 207, 330
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 3 cut(s) 9, 184, 544
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 386
BspPI GGATC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 729
BsrGI TGTACA 1 cut(s) 417
BssECI CCNNGG 1 cut(s) 104
BssHII GCGCGC 1 cut(s) 160
BssMI GATC 2 cut(s) 292, 463
Bst2UI CCWGG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 402
BstAUI TGTACA 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 162, 287, 432
BstDEI CTNAG 7 cut(s) 17, 192, 297, 510, 552, 744, 798
BstF5I GGATG 2 cut(s) 93, 174
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 2 cut(s) 162, 164
BstKTI GATC 2 cut(s) 295, 466
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 2 cut(s) 292, 463
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 346
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 446
BstV2I GAAGAC 1 cut(s) 101
Bsu36I CCTNAGG 2 cut(s) 192, 552
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 2 cut(s) 93, 174
Cac8I GCNNGC 3 cut(s) 162, 287, 432
CaiI CAGNNNCTG 1 cut(s) 443
CfoI GCGC 2 cut(s) 162, 164
Csp6I GTAC 3 cut(s) 418, 633, 644
CviAII CATG 4 cut(s) 139, 521, 731, 784
CviQI GTAC 3 cut(s) 418, 633, 644
DdeI CTNAG 7 cut(s) 17, 192, 297, 510, 552, 744, 798
DpnI GATC 2 cut(s) 294, 465
DpnII GATC 2 cut(s) 292, 463
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco147I AGGCCT 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 588
Eco81I CCTNAGG 2 cut(s) 192, 552
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 4 cut(s) 142, 524, 734, 787
FaqI GGGAC 1 cut(s) 121
FatI CATG 4 cut(s) 138, 520, 730, 783
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 2 cut(s) 100, 181
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 2 cut(s) 582, 593
GlaI GCGC 2 cut(s) 161, 163
GluI GCNGC 1 cut(s) 435
HaeIII GGCC 1 cut(s) 222
HhaI GCGC 2 cut(s) 162, 164
Hin1II CATG 4 cut(s) 142, 524, 734, 787
Hin6I GCGC 2 cut(s) 160, 162
HinP1I GCGC 2 cut(s) 160, 162
HinfI GANTC 6 cut(s) 109, 148, 269, 692, 737, 776
HphI GGTGA 3 cut(s) 344, 424, 710
Hpy166II GTNNAC 3 cut(s) 262, 644, 701
Hpy188I TCNGA 4 cut(s) 18, 25, 153, 496
Hpy188III TCNNGA 2 cut(s) 303, 551
Hpy8I GTNNAC 3 cut(s) 262, 644, 701
HpyAV CCTTC 2 cut(s) 64, 520
HpyCH4V TGCA 7 cut(s) 71, 278, 312, 364, 476, 727, 763
HpyF3I CTNAG 7 cut(s) 17, 192, 297, 510, 552, 744, 798
Hsp92II CATG 4 cut(s) 142, 524, 734, 787
HspAI GCGC 2 cut(s) 160, 162
Kzo9I GATC 2 cut(s) 292, 463
LmnI GCTCC 3 cut(s) 204, 384, 553
LpnPI CCDG 9 cut(s) 90, 117, 204, 456, 465, 564, 579, 660, 681
Lsp1109I GCAGC 1 cut(s) 446
LweI GCATC 1 cut(s) 159
MaeI CTAG 2 cut(s) 582, 593
MaeIII GTNAC 2 cut(s) 186, 595
MalI GATC 2 cut(s) 294, 465
MbiI CCGCTC 1 cut(s) 207
MboI GATC 2 cut(s) 292, 463
MboII GAAGA 8 cut(s) 103, 106, 419, 497, 512, 554, 581, 746
MluCI AATT 3 cut(s) 99, 488, 687
MlyI GAGTC 4 cut(s) 103, 142, 278, 770
MnlI CCTC 7 cut(s) 12, 26, 187, 403, 547, 612, 712
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 3 cut(s) 176, 402, 686
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 162
NdeI CATATG 1 cut(s) 256
NdeII GATC 2 cut(s) 292, 463
NlaIII CATG 4 cut(s) 142, 524, 734, 787
NlaIV GGNNCC 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 595
PauI GCGCGC 1 cut(s) 160
PceI AGGCCT 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 2 cut(s) 692, 737
PkrI GCNGC 1 cut(s) 436
PleI GAGTC 4 cut(s) 103, 142, 277, 770
PpsI GAGTC 4 cut(s) 103, 142, 277, 770
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 386
PstNI CAGNNNCTG 1 cut(s) 443
PteI GCGCGC 1 cut(s) 160
RsaI GTAC 3 cut(s) 419, 634, 645
RsaNI GTAC 3 cut(s) 418, 633, 644
SaqAI TTAA 3 cut(s) 176, 402, 686
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 2 cut(s) 292, 463
ScaI AGTACT 1 cut(s) 634
SchI GAGTC 4 cut(s) 103, 142, 278, 770
ScrFI CCNGG 1 cut(s) 105
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 3 cut(s) 99, 488, 687
SseBI AGGCCT 1 cut(s) 222
SsiI CCGC 2 cut(s) 207, 330
SspMI CTAG 2 cut(s) 582, 593
StuI AGGCCT 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 103
TaqI TCGA 2 cut(s) 291, 304
TasI AATT 3 cut(s) 99, 488, 687
TatI WGTACW 2 cut(s) 417, 632
TfiI GAWTC 2 cut(s) 692, 737
Tru1I TTAA 3 cut(s) 176, 402, 686
Tru9I TTAA 3 cut(s) 176, 402, 686
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 7 cut(s) 17, 104, 155, 307, 420, 513, 747
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 2 cut(s) 582, 593
ZrmI AGTACT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.