Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008929

Physical Location & Seq

Genomic Coordinates Forward (+)

24256627 .. 24256935

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31701.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCGTCTCCGGCGTCGTCTTTGGATCACGCACACAACCTCGTCCTCTCTATGTTGAGGGGTTCCGATCTGATTAAAGAGGGTGTCGCTACTAGTGCTGGTATGTCTGGCAGCGACCCATTGGCTTGGGATCCGCATCTAGGTAGCGACCAAGGCTTGGCGGCAAAAGGGTTTGGACAAGGCTGCTTGGCCGACGACGATGGTACCACGAATAACGCCGGCACTAAGTATGAGGCAGAGGTAAACCGGATCTCTCTTCCGATGTGGTTCACCGGCAGCCGAGTTTACTATTGGGTTTCGCGCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006928 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040011 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048870 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0051276 GO:0051674 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

103

Amino Acids

10.82

Weight (kDa)

5.06

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00300
fragaria_vesca	FvH4_1g10045 FvH4_1g25743 FvH4_2g16991 FvH4_2g31701 FvH4_4g08662 FvH4_6g44103 FvH4_6g48812
malus_domestica	MD04G1222900.v1.1 MD05G1232300.v1.1 MD05G1288100.v1.1 MD12G1229000.v1.1
prunus_persica	Prupe.1G257900_v2.0.a1
pyrus_communis	pycom13g14690
rosa_chinensis	RchiOBHm_Chr2g0123731 RchiOBHm_Chr2g0123741 RchiOBHm_Chr2g0157311 RchiOBHm_Chr7g0200891
rosa_roxburghii	Rroxscaffold_7G00215990
rosa_wichuraiana	Rw1G024090 Rw2G038200 Rw6G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccII	CGCG	1 cut(s)	301
AciI	CCGC	2 cut(s)	134, 161
AclWI	GGATC	4 cut(s)	33, 125, 138, 257
AcoI	YGGCCR	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	2 cut(s)	140, 157
AhlI	ACTAGT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	4 cut(s)	33, 125, 138, 257
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	3 cut(s)	111, 183, 276
Asp718I	GGTACC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	262
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BamHI	GGATCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	123, 170, 288
BccI	CCATC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	12
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	2 cut(s)	93, 140
BisI	GCNGC	4 cut(s)	112, 162, 184, 277
BlsI	GCNGC	4 cut(s)	113, 163, 185, 278
BmiI	GGNNCC	3 cut(s)	64, 132, 205
BmsI	GCATC	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 157
Bse118I	RCCGGY	2 cut(s)	218, 272
Bse8I	GATNNNNATC	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	140, 157
BseXI	GCAGC	3 cut(s)	123, 170, 288
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	203
BsiSI	CCGG	4 cut(s)	11, 219, 247, 273
BslI	CCNNNNNNNGG	2 cut(s)	140, 157
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	191
Bsp143I	GATC	4 cut(s)	25, 67, 130, 249
BspACI	CCGC	2 cut(s)	134, 161
BspANI	GGCC	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	3 cut(s)	64, 132, 205
BspPI	GGATC	4 cut(s)	33, 125, 138, 257
BspT107I	GGYRCC	1 cut(s)	203
BsrFI	RCCGGY	2 cut(s)	218, 272
BssAI	RCCGGY	2 cut(s)	218, 272
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	4 cut(s)	25, 67, 130, 249
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	4 cut(s)	28, 70, 133, 252
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	25, 67, 130, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 153
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	123, 170, 288
BstX2I	RGATCY	2 cut(s)	130, 249
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	2 cut(s)	130, 249
BsuRI	GGCC	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	303
Cfr10I	RCCGGY	2 cut(s)	218, 272
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	204
CviJI	RGCY	5 cut(s)	125, 156, 183, 191, 279
CviKI_1	RGCY	5 cut(s)	125, 156, 183, 191, 279
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	4 cut(s)	27, 69, 132, 251
DpnII	GATC	4 cut(s)	25, 67, 130, 249
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	12
FaiI	YATR	4 cut(s)	53, 104, 231, 307
Fnu4HI	GCNGC	4 cut(s)	112, 162, 184, 277
Fsp4HI	GCNGC	4 cut(s)	112, 162, 184, 277
FspBI	CTAG	2 cut(s)	93, 140
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	4 cut(s)	112, 162, 184, 277
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	4 cut(s)	11, 219, 247, 273
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HpaII	CCGG	4 cut(s)	11, 219, 247, 273
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	3 cut(s)	244, 270, 286
Hpy188I	TCNGA	3 cut(s)	67, 72, 261
Hpy8I	GTNNAC	3 cut(s)	244, 270, 286
Hpy99I	CGWCG	3 cut(s)	19, 197, 200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 153
HpyF3I	CTNAG	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	14
HspAI	GCGC	1 cut(s)	301
KpnI	GGTACC	1 cut(s)	207
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	25, 67, 130, 249
LpnPI	CCDG	6 cut(s)	24, 84, 93, 232, 260, 286
Lsp1109I	GCAGC	3 cut(s)	123, 170, 288
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	93, 140
MalI	GATC	4 cut(s)	27, 69, 132, 251
MboI	GATC	4 cut(s)	25, 67, 130, 249
MboII	GAAGA	1 cut(s)	248
MflI	RGATCY	2 cut(s)	130, 249
MnlI	CCTC	6 cut(s)	50, 51, 56, 73, 226, 232
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	1 cut(s)	75
MspI	CCGG	4 cut(s)	11, 219, 247, 273
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	95, 153
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	4 cut(s)	25, 67, 130, 249
NgoMIV	GCCGGC	1 cut(s)	218
NlaIV	GGNNCC	3 cut(s)	64, 132, 205
NmeAIII	GCCGAG	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	113, 163, 185, 278
PspN4I	GGNNCC	3 cut(s)	64, 132, 205
PsuI	RGATCY	2 cut(s)	130, 249
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	4 cut(s)	112, 162, 184, 277
Sau3AI	GATC	4 cut(s)	25, 67, 130, 249
SetI	ASST	3 cut(s)	42, 145, 243
SfaNI	GCATC	1 cut(s)	145
SpeI	ACTAGT	1 cut(s)	92
SsiI	CCGC	2 cut(s)	134, 161
SspMI	CTAG	2 cut(s)	93, 140
StyI	CCWWGG	1 cut(s)	151
TauI	GCSGC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	3 cut(s)	111, 183, 276
Van91I	CCANNNNNTGG	1 cut(s)	157
XspI	CTAG	2 cut(s)	93, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.