FvH4_1g25743

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008929
Physical Location & Seq
Reverse (-)
17660711 .. 17665670
4960 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25743.t1

Sequence Viewer

Length: 783 bp
ATGGTTGCTTCGTATGTGGTTCACCTGACCACTGGAAAAGGAATTGCAAACAATGGACGGAGAAGAAGGCGCAGATGTCAGGAGAAAGCACCTAGTCAGCCAACGTCGTTATTGGAAACAATGATGAGGATGGAGAACTCCTCGCAATCTCAACCAACTCCAGCGCGCCTAGACATTGGACCTTGGATACGGCCTGCACGTTTCATATGTGTGCACACAGATTGGTTCGACACATACAAGGAGAGGAACATCGGATCAGTTTTGATGGGGAATGATTCACCAAGCAGAATTATGGGAATTAGAACAGTAAAGATCAGAATGCATGATGGGTTCCTTAGCGGCGGCAGAGTTGACCATTCCCAGGCTGGAGCCTCATTCTCTTCCTCTGGTTCTTCAGAGAATGATAGTCATGGCGATGCGCTCGGGCTTCTTCTGGTTTTGGGGGTCTTCGGCCTCCCTTTATTGGTTTGCGTTGCTTTATCTCTGGGTGGGCTAACCATGTCGTCTCCGGCGTCGTCTTCGGATCACGCACACAACCTCGTCCTCTCTATCGACCAAGGCTTGGCGGCGAAAGGGTTTGGACAAGGCTGCTTGGCCGACGACGATGGTACAACGGATAACGCCGGCACTAGGTATGAGGCAGAGTTTACCATTGGGTTTCGCGCCTATGATGCAAATTGGGCTGCTGAGCTCGTCGGGGATCTCCTCCCTGATGTAGATCGTCATGCTTCTCTCGGGTTTAAAGGTGCAATGCTTATAGGTTGCAGCATAGGAATTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

27.77

Weight (kDa)

6.44

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 69 - 110 8.2e-06 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 562
AccII CGCG 2 cut(s) 166, 663
AciI CCGC 3 cut(s) 339, 342, 566
AclWI GGATC 3 cut(s) 262, 531, 708
AcoI YGGCCR 1 cut(s) 594
AcuI CTGAAG 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 1 cut(s) 610
AfiI CCNNNNNNNGG 4 cut(s) 361, 463, 562, 630
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 1 cut(s) 691
AluI AGCT 1 cut(s) 691
Alw21I GWGCWC 2 cut(s) 216, 693
Alw26I GTCTC 1 cut(s) 510
Alw44I GTGCAC 1 cut(s) 212
AlwI GGATC 3 cut(s) 262, 531, 708
Ama87I CYCGRG 2 cut(s) 422, 734
AoxI GGCC 3 cut(s) 191, 451, 594
ApaLI GTGCAC 1 cut(s) 212
ApeKI GCWGC 3 cut(s) 588, 683, 765
AspLEI GCGC 5 cut(s) 72, 166, 168, 421, 665
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 14, 270
AvaI CYCGRG 2 cut(s) 422, 734
AvaII GGWCC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 693
BbsI GAAGAC 2 cut(s) 439, 510
Bbv12I GWGCWC 2 cut(s) 216, 693
BbvI GCAGC 3 cut(s) 575, 670, 777
BccI CCATC 4 cut(s) 124, 259, 320, 599
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 362
BciVI GTATCC 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 4 cut(s) 93, 170, 630, 781
BfuI GTATCC 1 cut(s) 180
BisI GCNGC 6 cut(s) 340, 343, 567, 589, 684, 766
BlpI GCTNAGC 1 cut(s) 687
BlsI GCNGC 6 cut(s) 341, 344, 568, 590, 685, 767
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 2 cut(s) 422, 734
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 332, 370
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 2 cut(s) 406, 661
BpiI GAAGAC 2 cut(s) 439, 510
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 2 cut(s) 144, 387
Bpu10I CCTNAGC 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 687
BsaBI GATNNNNATC 1 cut(s) 717
BsaHI GRCGYC 1 cut(s) 512
BsaJI CCNNGG 3 cut(s) 182, 360, 556
Bsc4I CCNNNNNNNGG 4 cut(s) 361, 463, 562, 630
Bse118I RCCGGY 1 cut(s) 623
Bse1I ACTGG 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 756
Bse8I GATNNNNATC 1 cut(s) 717
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 3 cut(s) 182, 360, 556
BseGI GGATG 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 4 cut(s) 361, 463, 562, 630
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 37
BsePI GCGCGC 1 cut(s) 164
BseRI GAGGAG 2 cut(s) 130, 695
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 3 cut(s) 575, 670, 777
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 2 cut(s) 166, 663
BshFI GGCC 3 cut(s) 193, 453, 596
BsiHKAI GWGCWC 2 cut(s) 216, 693
BsiHKCI CYCGRG 2 cut(s) 422, 734
BsiSI CCGG 2 cut(s) 509, 624
BslI CCNNNNNNNGG 4 cut(s) 361, 463, 562, 630
BsmAI GTCTC 1 cut(s) 510
BsmBI CGTCTC 1 cut(s) 510
BsmI GAATGC 1 cut(s) 324
BsnI GGCC 3 cut(s) 193, 453, 596
BsoBI CYCGRG 2 cut(s) 422, 734
Bsp1286I GDGCHC 2 cut(s) 216, 693
Bsp143I GATC 5 cut(s) 254, 312, 523, 700, 718
Bsp1720I GCTNAGC 1 cut(s) 687
BspACI CCGC 3 cut(s) 339, 342, 566
BspANI GGCC 3 cut(s) 193, 453, 596
BspCNI CTCAG 1 cut(s) 679
BspFNI CGCG 2 cut(s) 166, 663
BspLI GGNNCC 2 cut(s) 332, 370
BspPI GGATC 3 cut(s) 262, 531, 708
BsrDI GCAATG 1 cut(s) 756
BsrFI RCCGGY 1 cut(s) 623
BsrI ACTGG 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 3 cut(s) 182, 360, 556
BssHII GCGCGC 1 cut(s) 164
BssMI GATC 5 cut(s) 254, 312, 523, 700, 718
BssNI GRCGYC 1 cut(s) 512
BssT1I CCWWGG 2 cut(s) 182, 556
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 385
BstACI GRCGYC 1 cut(s) 512
BstC8I GCNNGC 3 cut(s) 166, 195, 625
BstDEI CTNAG 2 cut(s) 335, 687
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 2 cut(s) 166, 663
BstHHI GCGC 5 cut(s) 72, 166, 168, 421, 665
BstKTI GATC 5 cut(s) 257, 315, 526, 703, 721
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 5 cut(s) 254, 312, 523, 700, 718
BstMWI GCNNNNNNNGC 2 cut(s) 671, 680
BstNI CCWGG 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 2 cut(s) 166, 663
BstV1I GCAGC 3 cut(s) 575, 670, 777
BstV2I GAAGAC 2 cut(s) 439, 510
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 3 cut(s) 193, 453, 596
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 3 cut(s) 166, 195, 625
CfoI GCGC 5 cut(s) 72, 166, 168, 421, 665
Cfr10I RCCGGY 1 cut(s) 623
Cfr13I GGNCC 1 cut(s) 179
CseI GACGC 1 cut(s) 501
Csp6I GTAC 1 cut(s) 609
CviAII CATG 4 cut(s) 323, 410, 499, 725
CviQI GTAC 1 cut(s) 609
DdeI CTNAG 2 cut(s) 335, 687
DpnI GATC 5 cut(s) 256, 314, 525, 702, 720
DpnII GATC 5 cut(s) 254, 312, 523, 700, 718
DraI TTTAAA 1 cut(s) 742
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Ecl136II GAGCTC 1 cut(s) 691
Eco130I CCWWGG 2 cut(s) 182, 556
Eco24I GRGCYC 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 378
Eco88I CYCGRG 2 cut(s) 422, 734
EcoICRI GAGCTC 1 cut(s) 691
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 182, 556
EcoT22I ATGCAT 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 693
ErhI CCWWGG 2 cut(s) 182, 556
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 4 cut(s) 326, 413, 502, 728
FatI CATG 4 cut(s) 322, 409, 498, 724
FauNDI CATATG 1 cut(s) 206
Fnu4HI GCNGC 6 cut(s) 340, 343, 567, 589, 684, 766
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 6 cut(s) 340, 343, 567, 589, 684, 766
FspBI CTAG 4 cut(s) 93, 170, 630, 781
GlaI GCGC 5 cut(s) 71, 165, 167, 420, 664
GluI GCNGC 6 cut(s) 340, 343, 567, 589, 684, 766
GsuI CTGGAG 2 cut(s) 144, 387
HaeIII GGCC 3 cut(s) 193, 453, 596
HapII CCGG 2 cut(s) 509, 624
HgaI GACGC 1 cut(s) 501
HhaI GCGC 5 cut(s) 72, 166, 168, 421, 665
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 4 cut(s) 326, 413, 502, 728
Hin6I GCGC 5 cut(s) 70, 164, 166, 419, 663
HinP1I GCGC 5 cut(s) 70, 164, 166, 419, 663
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 509, 624
HphI GGTGA 2 cut(s) 14, 270
Hpy166II GTNNAC 4 cut(s) 22, 214, 352, 648
Hpy188I TCNGA 4 cut(s) 254, 317, 397, 523
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 4 cut(s) 22, 214, 352, 648
Hpy99I CGWCG 5 cut(s) 109, 517, 602, 605, 698
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 2 cut(s) 104, 199
HpyCH4V TGCA 7 cut(s) 47, 197, 214, 322, 674, 749, 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 671, 680
HpyF3I CTNAG 2 cut(s) 335, 687
HpySE526I ACGT 2 cut(s) 104, 199
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 4 cut(s) 326, 413, 502, 728
HspAI GCGC 5 cut(s) 70, 164, 166, 419, 663
KroI GCCGGC 1 cut(s) 623
KroNI GCCGGC 1 cut(s) 625
Kzo9I GATC 5 cut(s) 254, 312, 523, 700, 718
LmnI GCTCC 1 cut(s) 368
Lsp1109I GCAGC 3 cut(s) 575, 670, 777
LweI GCATC 2 cut(s) 406, 661
MaeI CTAG 4 cut(s) 93, 170, 630, 781
MaeII ACGT 2 cut(s) 104, 199
MalI GATC 5 cut(s) 256, 314, 525, 702, 720
MboI GATC 5 cut(s) 254, 312, 523, 700, 718
MboII GAAGA 6 cut(s) 75, 372, 384, 422, 439, 510
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 2 cut(s) 216, 693
MluCI AATT 5 cut(s) 42, 288, 297, 676, 774
Mph1103I ATGCAT 1 cut(s) 324
MroNI GCCGGC 1 cut(s) 623
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 2 cut(s) 209, 414
MspI CCGG 2 cut(s) 509, 624
MspR9I CCNGG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 324
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 2 cut(s) 166, 663
MwoI GCNNNNNNNGC 2 cut(s) 671, 680
NaeI GCCGGC 1 cut(s) 625
NdeI CATATG 1 cut(s) 206
NdeII GATC 5 cut(s) 254, 312, 523, 700, 718
NgoMIV GCCGGC 1 cut(s) 623
NlaIII CATG 4 cut(s) 326, 413, 502, 728
NlaIV GGNNCC 2 cut(s) 332, 370
NsiI ATGCAT 1 cut(s) 324
PauI GCGCGC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 2 cut(s) 196, 509
PctI GAATGC 1 cut(s) 324
PdiI GCCGGC 1 cut(s) 625
PfeI GAWTC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 562
PkrI GCNGC 6 cut(s) 341, 344, 568, 590, 685, 767
Psp124BI GAGCTC 1 cut(s) 693
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 332, 370
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 700
PteI GCGCGC 1 cut(s) 164
RsaI GTAC 1 cut(s) 610
RsaNI GTAC 1 cut(s) 609
RseI CAYNNNNRTG 2 cut(s) 209, 414
SacI GAGCTC 1 cut(s) 693
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 6 cut(s) 340, 343, 567, 589, 684, 766
Sau3AI GATC 5 cut(s) 254, 312, 523, 700, 718
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 2 cut(s) 216, 693
SfaNI GCATC 2 cut(s) 406, 661
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 209, 414
Sse9I AATT 5 cut(s) 42, 288, 297, 676, 774
SsiI CCGC 3 cut(s) 339, 342, 566
SspMI CTAG 4 cut(s) 93, 170, 630, 781
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 2 cut(s) 182, 556
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 2 cut(s) 107, 202
TaqI TCGA 2 cut(s) 228, 552
TasI AATT 5 cut(s) 42, 288, 297, 676, 774
TauI GCSGC 3 cut(s) 342, 345, 569
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 1 cut(s) 37
TseI GCWGC 3 cut(s) 588, 683, 765
TspDTI ATGAA 1 cut(s) 193
TspGWI ACGGA 2 cut(s) 73, 629
TspRI CASTG 1 cut(s) 37
Van91I CCANNNNNTGG 1 cut(s) 562
VneI GTGCAC 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XspI CTAG 4 cut(s) 93, 170, 630, 781
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.