FvH4_1g10045

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008929
Physical Location & Seq
Reverse (-)
5466626 .. 5466997
372 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10045.t1

Sequence Viewer

Length: 372 bp
ATGACTGCGGTTGATGTGATCAACCTTTCTCCCTCAGCTCCATTGAATGGTGACGTGCCGAACAGGTTTTGGATCAGAAAGGACGTCTCATACAATCATCTAAAGGTATTTGGCTGCAAAGCATTTGTCCACATTCCCAAAGACGAAAGATCGAAGATTGATAGCAAGTCAAAAGAATGCATATTCTTGGGATATGGAAATGAAGAATATGGGTACAGGCTGTGGGATCCTGTCAACAAGAAGATTGTCAAAAACAGAGATGTTGTCTTCTTCGAAGATCAAAACATTGAAGATACTCAGAAGACTGAGAAGCCTAAGAAACCCAGAGAATATCTAGTCAACTCGGATAAAGATTCTCCGCCAACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 gag_pre-integrs rve

Protein Analysis

124

Amino Acids

14.31

Weight (kDa)

8.8

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 39 - 102 6.7e-26 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
AccB7I CCANNNNNTGG 1 cut(s) 47
AciI CCGC 2 cut(s) 8, 359
AclWI GGATC 3 cut(s) 80, 221, 234
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 46, 290
AjiI CACGTC 1 cut(s) 55
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 3 cut(s) 80, 221, 234
ApeKI GCWGC 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AsuHPI GGTGA 1 cut(s) 62
AsuII TTCGAA 1 cut(s) 273
BamHI GGATCC 1 cut(s) 226
BbsI GAAGAC 2 cut(s) 259, 308
BbvCI CCTCAGC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 101
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 335
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 259, 308
Bpu10I CCTNAGC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 3 cut(s) 48, 297, 311
BseXI GCAGC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 91
BsmBI CGTCTC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 273
Bsp143I GATC 5 cut(s) 18, 72, 149, 226, 277
BspACI CCGC 2 cut(s) 8, 359
BspCNI CTCAG 3 cut(s) 47, 298, 310
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 3 cut(s) 80, 221, 234
BspT104I TTCGAA 1 cut(s) 273
BssMI GATC 5 cut(s) 18, 72, 149, 226, 277
BssNI GRCGYC 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 273
BstDEI CTNAG 4 cut(s) 34, 297, 306, 315
BstKTI GATC 5 cut(s) 21, 75, 152, 229, 280
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 5 cut(s) 18, 72, 149, 226, 277
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 2 cut(s) 259, 308
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BtrI CACGTC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 214
CviJI RGCY 4 cut(s) 38, 114, 220, 313
CviKI_1 RGCY 4 cut(s) 38, 114, 220, 313
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 4 cut(s) 34, 297, 306, 315
DpnI GATC 5 cut(s) 20, 74, 151, 228, 279
DpnII GATC 5 cut(s) 18, 72, 149, 226, 277
EciI GGCGGA 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 91
FaiI YATR 4 cut(s) 91, 182, 195, 210
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 1 cut(s) 335
GluI GCNGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 84
HincII GTYRAC 2 cut(s) 235, 340
HindII GTYRAC 2 cut(s) 235, 340
HinfI GANTC 1 cut(s) 353
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 3 cut(s) 130, 235, 340
Hpy188I TCNGA 3 cut(s) 77, 300, 346
Hpy8I GTNNAC 3 cut(s) 130, 235, 340
HpyCH4IV ACGT 2 cut(s) 54, 84
HpyCH4V TGCA 2 cut(s) 117, 180
HpyF3I CTNAG 4 cut(s) 34, 297, 306, 315
HpySE526I ACGT 2 cut(s) 54, 84
Hsp92I GRCGYC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 5 cut(s) 18, 72, 149, 226, 277
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 4 cut(s) 49, 202, 243, 337
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 1 cut(s) 335
MaeII ACGT 2 cut(s) 54, 84
MaeIII GTNAC 1 cut(s) 50
MalI GATC 5 cut(s) 20, 74, 151, 228, 279
MboI GATC 5 cut(s) 18, 72, 149, 226, 277
MboII GAAGA 8 cut(s) 166, 215, 253, 259, 262, 287, 302, 313
MflI RGATCY 1 cut(s) 226
MnlI CCTC 1 cut(s) 43
Mph1103I ATGCAT 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 182
NdeII GATC 5 cut(s) 18, 72, 149, 226, 277
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 50
NsiI ATGCAT 1 cut(s) 182
NspV TTCGAA 1 cut(s) 273
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 353
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 5 cut(s) 18, 72, 149, 226, 277
SetI ASST 6 cut(s) 27, 40, 57, 68, 87, 108
SfuI TTCGAA 1 cut(s) 273
SsiI CCGC 2 cut(s) 8, 359
SspMI CTAG 1 cut(s) 335
TaiI ACGT 2 cut(s) 57, 87
TaqI TCGA 2 cut(s) 152, 273
TfiI GAWTC 1 cut(s) 353
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 47
XspI CTAG 1 cut(s) 335
ZraI GACGTC 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.