transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATMG00300 |
| fragaria_vesca | FvH4_1g10045 FvH4_1g25743 FvH4_2g16991 FvH4_2g31701 FvH4_4g08662 FvH4_6g44103 FvH4_6g48812 |
| malus_domestica | MD04G1222900.v1.1 MD05G1232300.v1.1 MD05G1288100.v1.1 MD12G1229000.v1.1 |
| prunus_persica | Prupe.1G257900_v2.0.a1 |
| pyrus_communis | pycom13g14690 |
| rosa_chinensis | RchiOBHm_Chr2g0123731 RchiOBHm_Chr2g0123741 RchiOBHm_Chr2g0157311 RchiOBHm_Chr7g0200891 |
| rosa_roxburghii | Rroxscaffold_7G00215990 |
| rosa_wichuraiana | Rw1G024090 Rw2G038200 Rw6G012570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 388 |
| Acc36I | ACCTGC | 2 cut(s) | 148, 388 |
| AclWI | GGATC | 2 cut(s) | 206, 430 |
| AcsI | RAATTY | 2 cut(s) | 86, 358 |
| AgsI | TTSAA | 2 cut(s) | 61, 425 |
| AluBI | AGCT | 3 cut(s) | 208, 230, 271 |
| AluI | AGCT | 3 cut(s) | 208, 230, 271 |
| AlwI | GGATC | 2 cut(s) | 206, 430 |
| AoxI | GGCC | 1 cut(s) | 219 |
| ApeKI | GCWGC | 1 cut(s) | 394 |
| ApoI | RAATTY | 2 cut(s) | 86, 358 |
| AspS9I | GGNCC | 1 cut(s) | 219 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| BbvI | GCAGC | 1 cut(s) | 406 |
| BclI | TGATCA | 1 cut(s) | 340 |
| BfaI | CTAG | 2 cut(s) | 120, 209 |
| BfuAI | ACCTGC | 2 cut(s) | 148, 388 |
| BisI | GCNGC | 1 cut(s) | 395 |
| BlsI | GCNGC | 1 cut(s) | 396 |
| BmgT120I | GGNCC | 1 cut(s) | 219 |
| BsaJI | CCNNGG | 1 cut(s) | 215 |
| Bse1I | ACTGG | 1 cut(s) | 439 |
| Bse3DI | GCAATG | 1 cut(s) | 36 |
| BseDI | CCNNGG | 1 cut(s) | 215 |
| BseMI | GCAATG | 1 cut(s) | 36 |
| BseNI | ACTGG | 1 cut(s) | 439 |
| BseXI | GCAGC | 1 cut(s) | 406 |
| BshFI | GGCC | 1 cut(s) | 221 |
| BsnI | GGCC | 1 cut(s) | 221 |
| Bsp143I | GATC | 3 cut(s) | 211, 340, 435 |
| BspANI | GGCC | 1 cut(s) | 221 |
| BspMI | ACCTGC | 2 cut(s) | 148, 388 |
| BspPI | GGATC | 2 cut(s) | 206, 430 |
| BsrDI | GCAATG | 1 cut(s) | 36 |
| BsrI | ACTGG | 1 cut(s) | 439 |
| BssECI | CCNNGG | 1 cut(s) | 215 |
| BssMI | GATC | 3 cut(s) | 211, 340, 435 |
| BssT1I | CCWWGG | 1 cut(s) | 215 |
| Bst4CI | ACNGT | 1 cut(s) | 382 |
| BstC8I | GCNNGC | 1 cut(s) | 206 |
| BstKTI | GATC | 3 cut(s) | 214, 343, 438 |
| BstMBI | GATC | 3 cut(s) | 211, 340, 435 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 227 |
| BstNSI | RCATGY | 1 cut(s) | 17 |
| BstV1I | GCAGC | 1 cut(s) | 406 |
| BstX2I | RGATCY | 1 cut(s) | 211 |
| BstYI | RGATCY | 1 cut(s) | 211 |
| BsuRI | GGCC | 1 cut(s) | 221 |
| BveI | ACCTGC | 2 cut(s) | 148, 388 |
| Cac8I | GCNNGC | 1 cut(s) | 206 |
| Cfr13I | GGNCC | 1 cut(s) | 219 |
| CviAII | CATG | 2 cut(s) | 14, 191 |
| CviJI | RGCY | 5 cut(s) | 208, 221, 230, 271, 329 |
| CviKI_1 | RGCY | 5 cut(s) | 208, 221, 230, 271, 329 |
| DpnI | GATC | 3 cut(s) | 213, 342, 437 |
| DpnII | GATC | 3 cut(s) | 211, 340, 435 |
| Eco130I | CCWWGG | 1 cut(s) | 215 |
| EcoT14I | CCWWGG | 1 cut(s) | 215 |
| ErhI | CCWWGG | 1 cut(s) | 215 |
| FaeI | CATG | 2 cut(s) | 17, 194 |
| FaiI | YATR | 6 cut(s) | 15, 127, 165, 192, 233, 335 |
| FatI | CATG | 2 cut(s) | 13, 190 |
| FbaI | TGATCA | 1 cut(s) | 340 |
| Fnu4HI | GCNGC | 1 cut(s) | 395 |
| Fsp4HI | GCNGC | 1 cut(s) | 395 |
| FspBI | CTAG | 2 cut(s) | 120, 209 |
| GluI | GCNGC | 1 cut(s) | 395 |
| HaeIII | GGCC | 1 cut(s) | 221 |
| Hin1II | CATG | 2 cut(s) | 17, 194 |
| HindIII | AAGCTT | 1 cut(s) | 269 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy166II | GTNNAC | 2 cut(s) | 95, 137 |
| Hpy188I | TCNGA | 3 cut(s) | 283, 345, 364 |
| Hpy8I | GTNNAC | 2 cut(s) | 95, 137 |
| HpyCH4III | ACNGT | 1 cut(s) | 382 |
| HpyCH4V | TGCA | 3 cut(s) | 34, 68, 394 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 227 |
| Hsp92II | CATG | 2 cut(s) | 17, 194 |
| Ksp22I | TGATCA | 1 cut(s) | 340 |
| Kzo9I | GATC | 3 cut(s) | 211, 340, 435 |
| LpnPI | CCDG | 8 cut(s) | 3, 20, 60, 117, 153, 181, 192, 383 |
| Lsp1109I | GCAGC | 1 cut(s) | 406 |
| MaeI | CTAG | 2 cut(s) | 120, 209 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MalI | GATC | 3 cut(s) | 213, 342, 437 |
| MboI | GATC | 3 cut(s) | 211, 340, 435 |
| MboII | GAAGA | 1 cut(s) | 301 |
| MflI | RGATCY | 1 cut(s) | 211 |
| MluCI | AATT | 4 cut(s) | 80, 86, 358, 417 |
| MnlI | CCTC | 2 cut(s) | 244, 319 |
| MseI | TTAA | 4 cut(s) | 246, 258, 267, 407 |
| MslI | CAYNNNNRTG | 1 cut(s) | 18 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 227 |
| NdeII | GATC | 3 cut(s) | 211, 340, 435 |
| NlaIII | CATG | 2 cut(s) | 17, 194 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| NspI | RCATGY | 1 cut(s) | 17 |
| PaqCI | CACCTGC | 1 cut(s) | 388 |
| PkrI | GCNGC | 1 cut(s) | 396 |
| PspPI | GGNCC | 1 cut(s) | 219 |
| PsuI | RGATCY | 1 cut(s) | 211 |
| RseI | CAYNNNNRTG | 1 cut(s) | 18 |
| SaqAI | TTAA | 4 cut(s) | 246, 258, 267, 407 |
| SatI | GCNGC | 1 cut(s) | 395 |
| Sau3AI | GATC | 3 cut(s) | 211, 340, 435 |
| Sau96I | GGNCC | 1 cut(s) | 219 |
| SetI | ASST | 7 cut(s) | 55, 67, 142, 210, 232, 273, 402 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 18 |
| Sse9I | AATT | 4 cut(s) | 80, 86, 358, 417 |
| SspMI | CTAG | 2 cut(s) | 120, 209 |
| StyI | CCWWGG | 1 cut(s) | 215 |
| TaaI | ACNGT | 1 cut(s) | 382 |
| TasI | AATT | 4 cut(s) | 80, 86, 358, 417 |
| Tru1I | TTAA | 4 cut(s) | 246, 258, 267, 407 |
| Tru9I | TTAA | 4 cut(s) | 246, 258, 267, 407 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| TseI | GCWGC | 1 cut(s) | 394 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspDTI | ATGAA | 1 cut(s) | 179 |
| XapI | RAATTY | 2 cut(s) | 86, 358 |
| XceI | RCATGY | 1 cut(s) | 17 |
| XspI | CTAG | 2 cut(s) | 120, 209 |