gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATMG00300 |
| fragaria_vesca | FvH4_1g10045 FvH4_1g25743 FvH4_2g16991 FvH4_2g31701 FvH4_4g08662 FvH4_6g44103 FvH4_6g48812 |
| malus_domestica | MD04G1222900.v1.1 MD05G1232300.v1.1 MD05G1288100.v1.1 MD12G1229000.v1.1 |
| prunus_persica | Prupe.1G257900_v2.0.a1 |
| pyrus_communis | pycom13g14690 |
| rosa_chinensis | RchiOBHm_Chr2g0123731 RchiOBHm_Chr2g0123741 RchiOBHm_Chr2g0157311 RchiOBHm_Chr7g0200891 |
| rosa_roxburghii | Rroxscaffold_7G00215990 |
| rosa_wichuraiana | Rw1G024090 Rw2G038200 Rw6G012570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 119 |
| Acc16I | TGCGCA | 1 cut(s) | 241 |
| Acc36I | ACCTGC | 1 cut(s) | 119 |
| AciI | CCGC | 1 cut(s) | 156 |
| AcsI | RAATTY | 1 cut(s) | 76 |
| AcvI | CACGTG | 1 cut(s) | 152 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 172 |
| AflIII | ACRYGT | 1 cut(s) | 149 |
| ApeKI | GCWGC | 1 cut(s) | 111 |
| ApoI | RAATTY | 1 cut(s) | 76 |
| AspLEI | GCGC | 1 cut(s) | 242 |
| AspS9I | GGNCC | 1 cut(s) | 163 |
| AvaII | GGWCC | 1 cut(s) | 163 |
| BbrPI | CACGTG | 1 cut(s) | 152 |
| BbvI | GCAGC | 1 cut(s) | 98 |
| BccI | CCATC | 1 cut(s) | 211 |
| BfmI | CTRYAG | 1 cut(s) | 112 |
| BfuAI | ACCTGC | 1 cut(s) | 119 |
| BisI | GCNGC | 2 cut(s) | 112, 157 |
| BlsI | GCNGC | 2 cut(s) | 113, 158 |
| Bme18I | GGWCC | 1 cut(s) | 163 |
| BmgT120I | GGNCC | 1 cut(s) | 163 |
| BpuEI | CTTGAG | 1 cut(s) | 109 |
| BsaAI | YACGTR | 1 cut(s) | 152 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 172 |
| Bse1I | ACTGG | 2 cut(s) | 17, 94 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BseNI | ACTGG | 2 cut(s) | 17, 94 |
| BseXI | GCAGC | 1 cut(s) | 98 |
| BslFI | GGGAC | 1 cut(s) | 44 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BsmFI | GGGAC | 1 cut(s) | 44 |
| BspACI | CCGC | 1 cut(s) | 156 |
| BspMAI | CTGCAG | 1 cut(s) | 116 |
| BspMI | ACCTGC | 1 cut(s) | 119 |
| BsrI | ACTGG | 2 cut(s) | 17, 94 |
| Bst4CI | ACNGT | 1 cut(s) | 183 |
| BstBAI | YACGTR | 1 cut(s) | 152 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 170 |
| BstHHI | GCGC | 1 cut(s) | 242 |
| BstSFI | CTRYAG | 1 cut(s) | 112 |
| BstV1I | GCAGC | 1 cut(s) | 98 |
| BtsIMutI | CAGTG | 1 cut(s) | 188 |
| BveI | ACCTGC | 1 cut(s) | 119 |
| CfoI | GCGC | 1 cut(s) | 242 |
| Cfr13I | GGNCC | 1 cut(s) | 163 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CviAII | CATG | 1 cut(s) | 160 |
| CviJI | RGCY | 2 cut(s) | 93, 111 |
| CviKI_1 | RGCY | 2 cut(s) | 93, 111 |
| CviQI | GTAC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 163 |
| Eco72I | CACGTG | 1 cut(s) | 152 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 170 |
| FaeI | CATG | 1 cut(s) | 163 |
| FaiI | YATR | 4 cut(s) | 140, 161, 205, 244 |
| FaqI | GGGAC | 1 cut(s) | 44 |
| FatI | CATG | 1 cut(s) | 159 |
| Fnu4HI | GCNGC | 2 cut(s) | 112, 157 |
| Fsp4HI | GCNGC | 2 cut(s) | 112, 157 |
| FspAI | RTGCGCAY | 1 cut(s) | 241 |
| FspI | TGCGCA | 1 cut(s) | 241 |
| GlaI | GCGC | 1 cut(s) | 241 |
| GluI | GCNGC | 2 cut(s) | 112, 157 |
| HhaI | GCGC | 1 cut(s) | 242 |
| Hin1II | CATG | 1 cut(s) | 163 |
| Hin6I | GCGC | 1 cut(s) | 240 |
| HinP1I | GCGC | 1 cut(s) | 240 |
| HinfI | GANTC | 1 cut(s) | 101 |
| Hpy188I | TCNGA | 1 cut(s) | 210 |
| HpyAV | CCTTC | 1 cut(s) | 166 |
| HpyCH4III | ACNGT | 1 cut(s) | 183 |
| HpyCH4IV | ACGT | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 1 cut(s) | 114 |
| HpySE526I | ACGT | 1 cut(s) | 151 |
| Hsp92II | CATG | 1 cut(s) | 163 |
| HspAI | GCGC | 1 cut(s) | 240 |
| LpnPI | CCDG | 5 cut(s) | 100, 107, 114, 185, 218 |
| Lsp1109I | GCAGC | 1 cut(s) | 98 |
| MaeII | ACGT | 1 cut(s) | 151 |
| MaeIII | GTNAC | 2 cut(s) | 50, 66 |
| MluCI | AATT | 1 cut(s) | 76 |
| MlyI | GAGTC | 1 cut(s) | 95 |
| MseI | TTAA | 1 cut(s) | 80 |
| NlaIII | CATG | 1 cut(s) | 163 |
| NmuCI | GTSAC | 1 cut(s) | 50 |
| NsbI | TGCGCA | 1 cut(s) | 241 |
| PaqCI | CACCTGC | 1 cut(s) | 119 |
| PflFI | GACNNNGTC | 1 cut(s) | 56 |
| PkrI | GCNGC | 2 cut(s) | 113, 158 |
| PleI | GAGTC | 1 cut(s) | 95 |
| PmaCI | CACGTG | 1 cut(s) | 152 |
| PmlI | CACGTG | 1 cut(s) | 152 |
| PpsI | GAGTC | 1 cut(s) | 95 |
| Ppu21I | YACGTR | 1 cut(s) | 152 |
| PspCI | CACGTG | 1 cut(s) | 152 |
| PspPI | GGNCC | 1 cut(s) | 163 |
| PstI | CTGCAG | 1 cut(s) | 116 |
| PsyI | GACNNNGTC | 1 cut(s) | 56 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| SaqAI | TTAA | 1 cut(s) | 80 |
| SatI | GCNGC | 2 cut(s) | 112, 157 |
| Sau96I | GGNCC | 1 cut(s) | 163 |
| SchI | GAGTC | 1 cut(s) | 95 |
| SetI | ASST | 4 cut(s) | 133, 154, 194, 215 |
| SfcI | CTRYAG | 1 cut(s) | 112 |
| SinI | GGWCC | 1 cut(s) | 163 |
| SmlI | CTYRAG | 1 cut(s) | 88 |
| SmoI | CTYRAG | 1 cut(s) | 88 |
| Sse9I | AATT | 1 cut(s) | 76 |
| SsiI | CCGC | 1 cut(s) | 156 |
| TaaI | ACNGT | 1 cut(s) | 183 |
| TaiI | ACGT | 1 cut(s) | 154 |
| TasI | AATT | 1 cut(s) | 76 |
| TauI | GCSGC | 1 cut(s) | 159 |
| Tru1I | TTAA | 1 cut(s) | 80 |
| Tru9I | TTAA | 1 cut(s) | 80 |
| TscAI | CASTG | 1 cut(s) | 188 |
| TseFI | GTSAC | 1 cut(s) | 50 |
| TseI | GCWGC | 1 cut(s) | 111 |
| Tsp45I | GTSAC | 1 cut(s) | 50 |
| TspDTI | ATGAA | 2 cut(s) | 155, 185 |
| TspRI | CASTG | 1 cut(s) | 188 |
| Tth111I | GACNNNGTC | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 1 cut(s) | 163 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 170 |
| XapI | RAATTY | 1 cut(s) | 76 |