Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008929

Physical Location & Seq

Genomic Coordinates Reverse (-)

10648819 .. 10650950

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14690.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTCTTCACAAGCCAGAATTTGAGTTTGATGCAGTTCGTCTGGAGTTGGAACTGTTTAGCCCTGAAATTGCTGAAAAGCCTTATGTAGTTGCATTTAACAAAATGGACCTTCCAGATGCTTATGAAAACTGGTCATCATTCAAAGAAAATTTAGAAGGTACTCATGAAGTAAGCTCTGCTGCTTATGAGCCTCTACGAGAAAATAAAGTGGCCGAGGAGGAGTTCCCAGGTCTATTTACTTTATTTTTTTCTGTATTAAAAAGGTTTCTGAATCTAAATGCATACATATATTATCTTGTGGATTTTGTTTTATACTCACATTATCACACAGACTATAGGGGAAACCAGTTGTTTTGTTATAAAAGGAGCTCACGTAGAAATAATTTGGGTGAGCCAATTTGTGAGATTCTCTTTATACATTTGTTATCTCAATCAGTTAATTATAAATTGAGAGTTATTTCTTTCATTTTATTTGTTCCGTTTGGTGCTCTAGCACAACAATTGGTATCAGAGCCACTAGGCTCATCCGTATCAAATTTTGTATTTGAAACTTGCTTGATGAAGATGGTTGTTCAACTGGAATCGGGAGGCACGCATCCTTGGCCGGAATCACACGCTTCGCATTTGGCAAAAACAACAGTTCAAAATGCAAAGTTTGAAGTTGAAAAGTTTGATGGAACAAATAACTTTGGTATGTGGCAATGTGAGGTTAAAGATGTGTTGGCTCAACAAGATTTGGACTTGACGTTAGAAGACAAGTTGGAGGATATGGAAGAAGCTAAGTGGAATAAGTTAAATCGAATGGCTTGCTCTACGATTCGCTTATGTCTTGCAAAACCTCAAAAGTATTTTGTCATGCGAGAAACATCAGCTAAGTCGCTATGGCAAAAATTGGAGGACAAGTACATGACAAAGAGCATCGAAAATCGCCTCCATTTGAAAAAGCAGTTGTACCGATTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

323

Amino Acids

37.69

Weight (kDa)

5.97

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00300
fragaria_vesca	FvH4_1g10045 FvH4_1g25743 FvH4_2g16991 FvH4_2g31701 FvH4_4g08662 FvH4_6g44103 FvH4_6g48812
malus_domestica	MD04G1222900.v1.1 MD05G1232300.v1.1 MD05G1288100.v1.1 MD12G1229000.v1.1
prunus_persica	Prupe.1G257900_v2.0.a1
pyrus_communis	pycom13g14690
rosa_chinensis	RchiOBHm_Chr2g0123731 RchiOBHm_Chr2g0123741 RchiOBHm_Chr2g0157311 RchiOBHm_Chr7g0200891
rosa_roxburghii	Rroxscaffold_7G00215990
rosa_wichuraiana	Rw1G024090 Rw2G038200 Rw6G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	363, 447
AcoI	YGGCCR	2 cut(s)	213, 605
AcsI	RAATTY	3 cut(s)	20, 151, 538
AfaI	GTAC	3 cut(s)	163, 908, 956
AgsI	TTSAA	7 cut(s)	145, 551, 578, 647, 662, 668, 943
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	4 cut(s)	177, 372, 782, 875
AluI	AGCT	4 cut(s)	177, 372, 782, 875
Alw21I	GWGCWC	2 cut(s)	374, 493
AoxI	GGCC	2 cut(s)	213, 605
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	3 cut(s)	20, 151, 538
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	2 cut(s)	374, 493
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	2 cut(s)	562, 671
BcgI	CGANNNNNNTGC	2 cut(s)	792, 826
BciT130I	CCWGG	1 cut(s)	231
BfaI	CTAG	2 cut(s)	494, 521
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	4 cut(s)	22, 109, 607, 930
BpiI	GAAGAC	1 cut(s)	762
BpmI	CTGGAG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	216, 229, 602
BsaXI	ACNNNNNCTCC	4 cut(s)	361, 391, 890, 920
Bse1I	ACTGG	3 cut(s)	137, 349, 585
Bse3DI	GCAATG	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	216, 229, 602
BseGI	GGATG	2 cut(s)	527, 598
BseMI	GCAATG	1 cut(s)	710
BseNI	ACTGG	3 cut(s)	137, 349, 585
BseRI	GAGGAG	2 cut(s)	233, 236
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	2 cut(s)	215, 607
BsiHKAI	GWGCWC	2 cut(s)	374, 493
BsiSI	CCGG	1 cut(s)	608
BsnI	GGCC	2 cut(s)	215, 607
Bsp1286I	GDGCHC	2 cut(s)	374, 493
BspANI	GGCC	2 cut(s)	215, 607
BspHI	TCATGA	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	710
BsrI	ACTGG	3 cut(s)	137, 349, 585
BssECI	CCNNGG	3 cut(s)	216, 229, 602
BssT1I	CCWWGG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	57, 643
Bst6I	CTCTTC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	596, 811
BstDEI	CTNAG	2 cut(s)	783, 876
BstF5I	GGATG	2 cut(s)	527, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	762
BsuRI	GGCC	2 cut(s)	215, 607
BtsCI	GGATG	2 cut(s)	527, 598
Cac8I	GCNNGC	2 cut(s)	596, 811
CciI	TCATGA	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	162, 907, 955
CviAII	CATG	3 cut(s)	167, 859, 910
CviQI	GTAC	3 cut(s)	162, 907, 955
DdeI	CTNAG	2 cut(s)	783, 876
EaeI	YGGCCR	2 cut(s)	213, 605
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	602
Eco24I	GRGCYC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	602
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	602
FaeI	CATG	3 cut(s)	170, 862, 913
FatI	CATG	3 cut(s)	166, 858, 909
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	514, 585
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	494, 521
GluI	GCNGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	215, 607
HapII	CCGG	1 cut(s)	608
Hin1II	CATG	3 cut(s)	170, 862, 913
HinfI	GANTC	6 cut(s)	274, 409, 584, 611, 820, 960
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	273, 514
Hpy188III	TCNNGA	4 cut(s)	44, 116, 167, 588
HpyAV	CCTTC	2 cut(s)	122, 152
HpyCH4III	ACNGT	2 cut(s)	57, 643
HpyCH4IV	ACGT	2 cut(s)	376, 749
HpyCH4V	TGCA	5 cut(s)	35, 95, 284, 653, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpyF3I	CTNAG	2 cut(s)	783, 876
HpySE526I	ACGT	2 cut(s)	376, 749
Hsp92II	CATG	3 cut(s)	170, 862, 913
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	369
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	4 cut(s)	22, 109, 607, 930
MaeI	CTAG	2 cut(s)	494, 521
MaeII	ACGT	2 cut(s)	376, 749
MboII	GAAGA	3 cut(s)	577, 767, 788
MfeI	CAATTG	1 cut(s)	503
MhlI	GDGCHC	2 cut(s)	374, 493
MmeI	TCCRAC	2 cut(s)	30, 744
MnlI	CCTC	9 cut(s)	204, 211, 214, 584, 703, 760, 852, 892, 944
Mph1103I	ATGCAT	1 cut(s)	286
MseI	TTAA	6 cut(s)	99, 260, 441, 714, 797, 967
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	604
NlaIII	CATG	3 cut(s)	170, 862, 913
NmeAIII	GCCGAG	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	286
PagI	TCATGA	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	6 cut(s)	274, 409, 584, 611, 820, 960
PkrI	GCNGC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	377
PsiI	TTATAA	2 cut(s)	363, 447
Psp124BI	GAGCTC	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	3 cut(s)	163, 908, 956
RsaNI	GTAC	3 cut(s)	162, 907, 955
SacI	GAGCTC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	6 cut(s)	99, 260, 441, 714, 797, 967
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	374, 493
SfaNI	GCATC	4 cut(s)	22, 109, 607, 930
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	109
SspMI	CTAG	2 cut(s)	494, 521
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	2 cut(s)	57, 643
TaiI	ACGT	2 cut(s)	379, 752
TaqI	TCGA	2 cut(s)	802, 924
TatI	WGTACW	1 cut(s)	906
TfiI	GAWTC	6 cut(s)	274, 409, 584, 611, 820, 960
Tru1I	TTAA	6 cut(s)	99, 260, 441, 714, 797, 967
Tru9I	TTAA	6 cut(s)	99, 260, 441, 714, 797, 967
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	4 cut(s)	141, 183, 457, 578
TspGWI	ACGGA	2 cut(s)	471, 520
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	3 cut(s)	20, 151, 538
XspI	CTAG	2 cut(s)	494, 521
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.