FvH4_1g04250

Plays an essential role in chain termination during de novo fatty acid synthesis

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
2248299 .. 2252454
4156 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04250.t1

Sequence Viewer

Length: 1257 bp
ATGGTTGCTTCTGCTGCTACTTCGTCGTTCTTTCCGGTTCCTTCTCCTGACTCTGGTGCCAAGAATTCCAAGAATGGAAATGGGAATTCCAAGTTAGGAATCAAATCAAAATCTGCTGCGGCTGGTTTGCAGGTAAAGGCCAACGCTCAAGCCCCTCCAAAAATAAATGGCACTAGTGTTGGTTTGGCCACTGTTGAAAGTGGAAAGCATGGGGATGACATGCACGGACTTACTCAATCCCCTCCTGCACGGACTTTCATTAACCAATTACCTGATTGGAGTATGCTCCTTGCTGCTATAACTACAATCTTCTTGGCAGCTGAAAAACAATGGATGATGCTTGATTGGAAACCCAAGCGGCCTGATATGCTAATTGACCCATTTGGTCTGGGAAGAATTGTTCAGGATGGTCTTGTATTCCGCCAGAACTTCTCCATTAGATCGTATGAAATAGGTGCTGATAGAACGGCTTCAATCGAGACGTTAATGAATCATTTACAGGAAACAGCGCTTAATCATGTTAAAACTGCTGGCCTCTTAGGGGACGGCTTTGGTTCAACTCCAGAGATGTCCATAAGAAACCTTATATGGGTGGTAACCAAAATGCAGGTTAAGGTAGACCGCTATCCTACTTGGGGTGATGTTGTTCAAGTTGACACTTGGGTTAGTGCCTCTGGGAAGAATGGTATGCGGCGTGATTGGATTATCCAGGATTGCAAAACAGGACAAATATTAACAAGAGCCTCCAGTGTGTGGGTGATGATGAATAAACTGACTAGGAGGTTATCCAAGATACCCAATGAGGTTCGAAGTGAAATAGAGCCTTACTTTGTGAATAATCCTCCTGTTGTGGAGGAGGATGGCAGGAAACTGCAGAAACTTGACGACAATACAGCGGACTTTGTCCGTACTGGTTTAACTCCTCGGTGGAGTGATCTGGACATCAACCAGCATGTTAACAATGTCAAGTACATTGGCTGGATCCTTGAGAGTGCTCCCTTGCCAATCTTGGAGAGCCATGAGCTTTCTTCAATGACTCTGGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTTCAGTCCCTGTCTGCAGTTTCTGCTGATATCGGGCATTTGGCAAGCACTGGCAACGTAGAGTGCCAGCACTTGCTTCGACTCGAGGGTGGGTCTGAGATTGTGAGGGGAAGGACTGGTTGGAGGCCCAAAAAACCCAACAATCTCGGGATTATGGGTGGGTTTCCAGCTGAAAGCGCATAG

Protein Analysis

419

Amino Acids

45.97

Weight (kDa)

8.83

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-thio_N PF12590 1 - 126 5.4e-52 Acyl-ATP thioesterase
Acyl-ACP_TE PF01643 137 - 273 1e-41 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 299 - 400 1.4e-27 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 121, 598
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 753
AccI GTMKAC 1 cut(s) 618
AciI CCGC 6 cut(s) 119, 358, 421, 622, 691, 896
AclWI GGATC 2 cut(s) 976, 989
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 2 cut(s) 64, 85
AcuI CTGAAG 1 cut(s) 1061
AfaI GTAC 2 cut(s) 910, 971
AfeI AGCGCT 1 cut(s) 510
AfiI CCNNNNNNNGG 5 cut(s) 53, 541, 589, 635, 753
AgsI TTSAA 5 cut(s) 197, 474, 558, 650, 1032
AhlI ACTAGT 1 cut(s) 173
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 2 cut(s) 1177, 1209
AloI GAACNNNNNNTCC 2 cut(s) 384, 416
AluBI AGCT 3 cut(s) 320, 1024, 1244
AluI AGCT 3 cut(s) 320, 1024, 1244
Alw21I GWGCWC 1 cut(s) 997
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 2 cut(s) 976, 989
AlwNI CAGNNNCTG 2 cut(s) 1084, 1097
Ama87I CYCGRG 2 cut(s) 1157, 1220
Aor51HI AGCGCT 1 cut(s) 510
AoxI GGCC 5 cut(s) 138, 186, 359, 532, 1199
ApeKI GCWGC 4 cut(s) 14, 116, 293, 317
ApoI RAATTY 2 cut(s) 64, 85
Asp700I GAANNNNTTC 1 cut(s) 469
AspLEI GCGC 2 cut(s) 511, 1253
AspS9I GGNCC 1 cut(s) 1200
AsuHPI GGTGA 2 cut(s) 650, 769
AsuII TTCGAA 1 cut(s) 808
AvaI CYCGRG 2 cut(s) 1157, 1220
BalI TGGCCA 1 cut(s) 188
BamHI GGATCC 1 cut(s) 981
BanI GGYRCC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 997
BbvI GCAGC 3 cut(s) 103, 280, 329
BccI CCATC 2 cut(s) 401, 854
BceAI ACGGC 2 cut(s) 483, 562
BcgI CGANNNNNNTGC 2 cut(s) 1133, 1167
BciT130I CCWGG 1 cut(s) 710
BcoDI GTCTC 1 cut(s) 473
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 174, 777
BfmI CTRYAG 2 cut(s) 872, 1089
BfoI RGCGCY 1 cut(s) 512
BfuAI ACCTGC 2 cut(s) 121, 598
BisI GCNGC 7 cut(s) 15, 117, 120, 294, 318, 359, 692
BlsI GCNGC 7 cut(s) 16, 118, 121, 295, 319, 360, 693
Bme1390I CCNGG 1 cut(s) 710
BmeT110I CYCGRG 2 cut(s) 1157, 1220
BmgT120I GGNCC 1 cut(s) 1200
BmiI GGNNCC 3 cut(s) 39, 58, 983
BmrFI CCNGG 1 cut(s) 710
BmsI GCATC 1 cut(s) 327
BpmI CTGGAG 3 cut(s) 546, 730, 1061
Bpu14I TTCGAA 1 cut(s) 808
BpuEI CTTGAG 2 cut(s) 132, 1007
BsaJI CCNNGG 1 cut(s) 923
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 1042, 1072
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 541, 589, 635, 753
Bse1I ACTGG 4 cut(s) 747, 916, 1129, 1195
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 1 cut(s) 923
BseGI GGATG 4 cut(s) 220, 339, 412, 865
BseLI CCNNNNNNNGG 5 cut(s) 53, 541, 589, 635, 753
BseMII CTCAG 1 cut(s) 1161
BseNI ACTGG 4 cut(s) 747, 916, 1129, 1195
BseRI GAGGAG 2 cut(s) 869, 912
BseXI GCAGC 3 cut(s) 103, 280, 329
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 5 cut(s) 140, 188, 361, 534, 1201
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 997
BsiHKCI CYCGRG 2 cut(s) 1157, 1220
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 3 cut(s) 557, 1066, 1079
BslI CCNNNNNNNGG 5 cut(s) 53, 541, 589, 635, 753
BsmAI GTCTC 1 cut(s) 473
BsmBI CGTCTC 1 cut(s) 473
BsmFI GGGAC 3 cut(s) 557, 1066, 1079
BsnI GGCC 5 cut(s) 140, 188, 361, 534, 1201
BsoBI CYCGRG 2 cut(s) 1157, 1220
Bsp119I TTCGAA 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 997
Bsp143I GATC 3 cut(s) 440, 934, 981
BspACI CCGC 6 cut(s) 119, 358, 421, 622, 691, 896
BspANI GGCC 5 cut(s) 140, 188, 361, 534, 1201
BspCNI CTCAG 1 cut(s) 1162
BspLI GGNNCC 3 cut(s) 39, 58, 983
BspMAI CTGCAG 2 cut(s) 876, 1093
BspMI ACCTGC 2 cut(s) 121, 598
BspPI GGATC 2 cut(s) 976, 989
BspT104I TTCGAA 1 cut(s) 808
BspT107I GGYRCC 1 cut(s) 56
BsrI ACTGG 4 cut(s) 747, 916, 1129, 1195
BssECI CCNNGG 1 cut(s) 923
BssMI GATC 3 cut(s) 440, 934, 981
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 193, 1070
BstAPI GCANNNNNTGC 1 cut(s) 1097
BstBI TTCGAA 1 cut(s) 808
BstC8I GCNNGC 3 cut(s) 532, 1120, 1142
BstDEI CTNAG 2 cut(s) 538, 1170
BstEII GGTNACC 1 cut(s) 595
BstF5I GGATG 4 cut(s) 220, 339, 412, 865
BstH2I RGCGCY 1 cut(s) 512
BstHHI GCGC 2 cut(s) 511, 1253
BstKTI GATC 3 cut(s) 443, 937, 984
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 3 cut(s) 440, 934, 981
BstMWI GCNNNNNNNGC 4 cut(s) 14, 367, 1097, 1250
BstNI CCWGG 1 cut(s) 710
BstNSI RCATGY 2 cut(s) 223, 956
BstPI GGTNACC 1 cut(s) 595
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 2 cut(s) 872, 1089
BstV1I GCAGC 3 cut(s) 103, 280, 329
BstX2I RGATCY 1 cut(s) 981
BstYI RGATCY 1 cut(s) 981
BsuRI GGCC 5 cut(s) 140, 188, 361, 534, 1201
BtsCI GGATG 4 cut(s) 220, 339, 412, 865
BtsIMutI CAGTG 4 cut(s) 189, 754, 1075, 1122
BveI ACCTGC 2 cut(s) 121, 598
Cac8I GCNNGC 3 cut(s) 532, 1120, 1142
CaiI CAGNNNCTG 2 cut(s) 1084, 1097
CfoI GCGC 2 cut(s) 511, 1253
Cfr13I GGNCC 1 cut(s) 1200
Csp6I GTAC 2 cut(s) 909, 970
CviAII CATG 5 cut(s) 209, 220, 518, 953, 1019
CviQI GTAC 2 cut(s) 909, 970
DdeI CTNAG 2 cut(s) 538, 1170
DpnI GATC 3 cut(s) 442, 936, 983
DpnII GATC 3 cut(s) 440, 934, 981
EaeI YGGCCR 1 cut(s) 186
EciI GGCGGA 1 cut(s) 410
Eco32I GATATC 1 cut(s) 1105
Eco47III AGCGCT 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 1061
Eco88I CYCGRG 2 cut(s) 1157, 1220
Eco91I GGTNACC 1 cut(s) 595
EcoO65I GGTNACC 1 cut(s) 595
EcoRI GAATTC 2 cut(s) 64, 85
EcoRII CCWGG 1 cut(s) 708
EcoRV GATATC 1 cut(s) 1105
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 5 cut(s) 212, 223, 521, 956, 1022
FaqI GGGAC 3 cut(s) 557, 1066, 1079
FatI CATG 5 cut(s) 208, 219, 517, 952, 1018
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 7 cut(s) 15, 117, 120, 294, 318, 359, 692
FokI GGATG 4 cut(s) 227, 346, 419, 872
Fsp4HI GCNGC 7 cut(s) 15, 117, 120, 294, 318, 359, 692
FspBI CTAG 2 cut(s) 174, 777
GlaI GCGC 2 cut(s) 510, 1252
GluI GCNGC 7 cut(s) 15, 117, 120, 294, 318, 359, 692
GsuI CTGGAG 3 cut(s) 546, 730, 1061
HaeII RGCGCY 1 cut(s) 512
HaeIII GGCC 5 cut(s) 140, 188, 361, 534, 1201
HapII CCGG 1 cut(s) 35
HhaI GCGC 2 cut(s) 511, 1253
Hin1II CATG 5 cut(s) 212, 223, 521, 956, 1022
Hin6I GCGC 2 cut(s) 509, 1251
HinP1I GCGC 2 cut(s) 509, 1251
HincII GTYRAC 2 cut(s) 655, 958
HindII GTYRAC 2 cut(s) 655, 958
HinfI GANTC 5 cut(s) 50, 99, 490, 1036, 1155
HpaI GTTAAC 1 cut(s) 958
HpaII CCGG 1 cut(s) 35
HphI GGTGA 2 cut(s) 650, 769
Hpy166II GTNNAC 3 cut(s) 619, 655, 958
Hpy188I TCNGA 1 cut(s) 1171
Hpy188III TCNNGA 7 cut(s) 47, 404, 478, 563, 938, 1040, 1222
Hpy8I GTNNAC 3 cut(s) 619, 655, 958
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 51, 1179
HpyCH4III ACNGT 2 cut(s) 193, 1070
HpyCH4IV ACGT 2 cut(s) 482, 1131
HpyCH4V TGCA 7 cut(s) 130, 223, 248, 607, 717, 874, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 367, 1097, 1250
HpyF3I CTNAG 2 cut(s) 538, 1170
HpySE526I ACGT 2 cut(s) 482, 1131
Hsp92II CATG 5 cut(s) 212, 223, 521, 956, 1022
HspAI GCGC 2 cut(s) 509, 1251
KspAI GTTAAC 1 cut(s) 958
Kzo9I GATC 3 cut(s) 440, 934, 981
LmnI GCTCC 2 cut(s) 291, 1000
Lsp1109I GCAGC 3 cut(s) 103, 280, 329
LweI GCATC 1 cut(s) 327
MaeI CTAG 2 cut(s) 174, 777
MaeII ACGT 2 cut(s) 482, 1131
MaeIII GTNAC 1 cut(s) 595
MalI GATC 3 cut(s) 442, 936, 983
MboI GATC 3 cut(s) 440, 934, 981
MboII GAAGA 4 cut(s) 301, 405, 691, 1020
MflI RGATCY 1 cut(s) 981
MhlI GDGCHC 1 cut(s) 997
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 5 cut(s) 64, 85, 266, 372, 396
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 3 cut(s) 44, 1030, 1149
MmeI TCCRAC 1 cut(s) 1175
Mox20I TGGCCA 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 469
MscI TGGCCA 1 cut(s) 188
MseI TTAA 8 cut(s) 261, 485, 513, 522, 612, 734, 917, 957
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 3 cut(s) 320, 896, 1244
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 4 cut(s) 14, 367, 1097, 1250
NdeII GATC 3 cut(s) 440, 934, 981
NlaIII CATG 5 cut(s) 212, 223, 521, 956, 1022
NlaIV GGNNCC 3 cut(s) 39, 58, 983
NspI RCATGY 2 cut(s) 223, 956
NspV TTCGAA 1 cut(s) 808
PaeR7I CTCGAG 1 cut(s) 1157
PdmI GAANNNNTTC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 99, 490
PflFI GACNNNGTC 1 cut(s) 902
PflMI CCANNNNNTGG 1 cut(s) 753
PfoI TCCNGGA 1 cut(s) 708
PkrI GCNGC 7 cut(s) 16, 118, 121, 295, 319, 360, 693
PleI GAGTC 3 cut(s) 44, 1030, 1149
PpsI GAGTC 3 cut(s) 44, 1030, 1149
Psp6I CCWGG 1 cut(s) 708
PspEI GGTNACC 1 cut(s) 595
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 3 cut(s) 39, 58, 983
PspPI GGNCC 1 cut(s) 1200
PspXI VCTCGAGB 1 cut(s) 1157
PstI CTGCAG 2 cut(s) 876, 1093
PstNI CAGNNNCTG 2 cut(s) 1084, 1097
PsuI RGATCY 1 cut(s) 981
PsyI GACNNNGTC 1 cut(s) 902
PvuII CAGCTG 2 cut(s) 320, 1244
RsaI GTAC 2 cut(s) 910, 971
RsaNI GTAC 2 cut(s) 909, 970
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 8 cut(s) 261, 485, 513, 522, 612, 734, 917, 957
SatI GCNGC 7 cut(s) 15, 117, 120, 294, 318, 359, 692
Sau3AI GATC 3 cut(s) 440, 934, 981
Sau96I GGNCC 1 cut(s) 1200
SchI GAGTC 3 cut(s) 44, 1030, 1149
ScrFI CCNGG 1 cut(s) 710
SduI GDGCHC 1 cut(s) 997
SfaNI GCATC 1 cut(s) 327
SfcI CTRYAG 2 cut(s) 872, 1089
Sfr274I CTCGAG 1 cut(s) 1157
SfuI TTCGAA 1 cut(s) 808
SlaI CTCGAG 1 cut(s) 1157
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 3 cut(s) 147, 986, 1157
SmoI CTYRAG 3 cut(s) 147, 986, 1157
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 5 cut(s) 64, 85, 266, 372, 396
SsiI CCGC 6 cut(s) 119, 358, 421, 622, 691, 896
SspI AATATT 1 cut(s) 732
SspMI CTAG 2 cut(s) 174, 777
StyD4I CCNGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 193, 1070
TaiI ACGT 2 cut(s) 485, 1134
TaqI TCGA 4 cut(s) 477, 808, 1153, 1158
TasI AATT 5 cut(s) 64, 85, 266, 372, 396
TatI WGTACW 1 cut(s) 969
TauI GCSGC 3 cut(s) 122, 361, 694
TfiI GAWTC 2 cut(s) 99, 490
Tru1I TTAA 8 cut(s) 261, 485, 513, 522, 612, 734, 917, 957
Tru9I TTAA 8 cut(s) 261, 485, 513, 522, 612, 734, 917, 957
TscAI CASTG 4 cut(s) 196, 754, 1075, 1129
TseI GCWGC 4 cut(s) 14, 116, 293, 317
TspDTI ATGAA 4 cut(s) 247, 462, 503, 779
TspGWI ACGGA 3 cut(s) 240, 265, 896
TspRI CASTG 4 cut(s) 196, 754, 1075, 1129
Tth111I GACNNNGTC 1 cut(s) 902
Van91I CCANNNNNTGG 1 cut(s) 753
XapI RAATTY 2 cut(s) 64, 85
XceI RCATGY 2 cut(s) 223, 956
XhoI CTCGAG 1 cut(s) 1157
XmiI GTMKAC 1 cut(s) 618
XmnI GAANNNNTTC 1 cut(s) 469
XspI CTAG 2 cut(s) 174, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.