MD02G1042500.v1.1

Plays an essential role in chain termination during de novo fatty acid synthesis

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
3484770 .. 3489451
4682 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1042500.v1.1.491

Sequence Viewer

Length: 1248 bp
ATGGTTGCCACTTCTGCTACTGCCTCGTTCTTTCCGGTTTCTTCTCCCAACTCAGACTCAAGCGCCAAGAACGCCAAGCTTGGGTCAGCCAATTTAGGACTCAAATCGAAGTCTGCATCTGGTGGTTTGCAGGTAAAGGCAAATGCTCAAGCCCCTTCAAAGATAAATGGAACTAGTGTTGGTTTGGCAACCGTGGAAAGTGGGAAGCATGGGGATGACATTTCATCCCCTCCGGCACGGACTTTCATTAACCAATTACCTGATTGGAGTGTGCTCCTTGCTGCTATTACCACAATCTTCTTGGCTGCAGAGAAGCAATGGACAATGCTTGATTGGAAACCCAAGCGACCTGACATGCTCATTGACCCATTTGGTCTAGGACGAATTGTTCAGGATGGTCTTGTCTTTCGCCAGAACTTCTCAATTAGATCATATGAAATAGGTGCTGATCGTACGGCTTCAATAGAGACGTTAATGAATCATTTACAGGAAACAGCACTTAATCATGTTAAGACTGCTGGACTTCTGGGAGATGGTTTTGGTTCAACTCCAGAGATGACTGTAAGAAACCTGATATGGGTGGTAACGAAGATGCAGGTTGTGGTAGACCGCTATCCTACTTGGGGTGACGTTGTTCAAGTTGACACTTGGGTTAGTGCCTCTGGGAAGAATGGAATGCGTCGTGATTGGATTATCCAGGATTTGAAAACTGGCCAAATTCTAACAAGAGCCTCCAGTGTGTGGGTGATGATGAATAAAGTGACGAGGAGATTATCAAAGATGCCTGATGCAGTTCGCGGTGAAATAGAGTCCTTTTTTATGAATTCTCCTCCTGTTGTGGAGGAAGATGGCAGGAAACTGCCGAAACTTGATGACAAAACAGCGGACGTTGTTCTCTCTGGTTTGACTCCTAGATGGAGTGATTTAGATGTCAACCAGCACGTTAATAACGTGAAGTACATTGGCTGGATCCTTGAGGGTGCTCCCTTGCCAATCCTGGAGAGTCATGAGCTCTCTTCTTTGACTCTGGAGTATAGGAGGGAGTGCGGGAGGGACAGTGTGCTTCAGTCTCTGACTGCAGTCTCAGGTGCTGATATCGGCAACCTGGGAAGTAATGGCACGGTGGAGTGCCAGCACATGCTTCGACTTGAGGATGGGGCTGAGATTGTGAGGGGAAGGACTGAGTGGAGGCCCAAATATGCCAACAATCTTGGGATTGTGGGTCATCTTCCAGCAGAAAGCGCATAG

Protein Analysis

416

Amino Acids

45.31

Weight (kDa)

6.68

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-thio_N PF12590 1 - 122 1.7e-51 Acyl-ATP thioesterase
Acyl-ACP_TE PF01643 133 - 267 3e-40 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 298 - 397 4.2e-28 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 121, 586
AccB7I CCANNNNNTGG 1 cut(s) 741
AccI GTMKAC 1 cut(s) 606
AccII CGCG 1 cut(s) 798
AciI CCGC 4 cut(s) 610, 798, 884, 1047
AclWI GGATC 2 cut(s) 964, 977
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 2 cut(s) 717, 823
AcuI CTGAAG 1 cut(s) 1049
AfaI GTAC 2 cut(s) 454, 959
AfiI CCNNNNNNNGG 4 cut(s) 81, 577, 623, 741
AgsI TTSAA 5 cut(s) 159, 462, 546, 638, 706
AhlI ACTAGT 1 cut(s) 173
AjnI CCWGG 3 cut(s) 696, 996, 1104
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 2 cut(s) 79, 1012
AluI AGCT 2 cut(s) 79, 1012
Alw21I GWGCWC 3 cut(s) 276, 985, 1014
Alw26I GTCTC 3 cut(s) 461, 1074, 1087
AlwI GGATC 2 cut(s) 964, 977
AlwNI CAGNNNCTG 2 cut(s) 1072, 1091
AoxI GGCC 2 cut(s) 712, 1190
ApeKI GCWGC 2 cut(s) 281, 305
ApoI RAATTY 2 cut(s) 717, 823
AspLEI GCGC 2 cut(s) 65, 1244
AspS9I GGNCC 1 cut(s) 1191
AsuHPI GGTGA 3 cut(s) 638, 757, 812
BalI TGGCCA 1 cut(s) 714
BamHI GGATCC 1 cut(s) 969
BanII GRGCYC 1 cut(s) 1014
Bbv12I GWGCWC 3 cut(s) 276, 985, 1014
BbvI GCAGC 2 cut(s) 268, 292
BccI CCATC 5 cut(s) 389, 527, 842, 909, 1148
BceAI ACGGC 1 cut(s) 471
BcgI CGANNNNNNTGC 2 cut(s) 1124, 1158
BciT130I CCWGG 3 cut(s) 698, 998, 1106
BcoDI GTCTC 3 cut(s) 461, 1074, 1087
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 3 cut(s) 174, 377, 912
BfmI CTRYAG 2 cut(s) 306, 1077
BfoI RGCGCY 1 cut(s) 66
BfuAI ACCTGC 2 cut(s) 121, 586
BisI GCNGC 2 cut(s) 282, 306
BlsI GCNGC 2 cut(s) 283, 307
Bme1390I CCNGG 3 cut(s) 698, 998, 1106
BmgT120I GGNCC 1 cut(s) 1191
BmiI GGNNCC 1 cut(s) 971
BmrFI CCNGG 3 cut(s) 698, 998, 1106
BmsI GCATC 4 cut(s) 125, 582, 771, 778
BoxI GACNNNNGTC 1 cut(s) 1079
BpmI CTGGAG 4 cut(s) 534, 718, 1019, 1049
BpuEI CTTGAG 4 cut(s) 43, 132, 995, 1169
BsaJI CCNNGG 2 cut(s) 192, 1105
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 1042, 1072
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 577, 623, 741
Bse1I ACTGG 2 cut(s) 715, 735
Bse3DI GCAATG 1 cut(s) 323
BseBI CCWGG 3 cut(s) 698, 998, 1106
BseDI CCNNGG 2 cut(s) 192, 1105
BseGI GGATG 4 cut(s) 220, 224, 400, 1159
BseLI CCNNNNNNNGG 4 cut(s) 81, 577, 623, 741
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 4 cut(s) 66, 1098, 1152, 1173
BseNI ACTGG 2 cut(s) 715, 735
BseRI GAGGAG 2 cut(s) 781, 819
BseXI GCAGC 2 cut(s) 268, 292
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 2 cut(s) 714, 1192
BsiHKAI GWGCWC 3 cut(s) 276, 985, 1014
BsiSI CCGG 2 cut(s) 35, 233
BsiWI CGTACG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 1067
BslI CCNNNNNNNGG 4 cut(s) 81, 577, 623, 741
BsmAI GTCTC 3 cut(s) 461, 1074, 1087
BsmBI CGTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 1067
BsmI GAATGC 1 cut(s) 681
BsnI GGCC 2 cut(s) 714, 1192
Bsp1286I GDGCHC 3 cut(s) 276, 985, 1014
Bsp143I GATC 3 cut(s) 428, 448, 969
BspACI CCGC 4 cut(s) 610, 798, 884, 1047
BspANI GGCC 2 cut(s) 714, 1192
BspCNI CTCAG 4 cut(s) 65, 1097, 1153, 1174
BspFNI CGCG 1 cut(s) 798
BspHI TCATGA 1 cut(s) 1006
BspLI GGNNCC 1 cut(s) 971
BspMAI CTGCAG 2 cut(s) 310, 1081
BspMI ACCTGC 2 cut(s) 121, 586
BspPI GGATC 2 cut(s) 964, 977
BsrDI GCAATG 1 cut(s) 323
BsrI ACTGG 2 cut(s) 715, 735
BssECI CCNNGG 2 cut(s) 192, 1105
BssMI GATC 3 cut(s) 428, 448, 969
Bst2UI CCWGG 3 cut(s) 698, 998, 1106
Bst4CI ACNGT 4 cut(s) 193, 562, 1058, 1123
Bst6I CTCTTC 1 cut(s) 1021
BstC8I GCNNGC 1 cut(s) 1133
BstDEI CTNAG 4 cut(s) 52, 1084, 1161, 1182
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 4 cut(s) 220, 224, 400, 1159
BstFNI CGCG 1 cut(s) 798
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 2 cut(s) 65, 1244
BstKTI GATC 3 cut(s) 431, 451, 972
BstMAI GTCTC 3 cut(s) 461, 1074, 1087
BstMBI GATC 3 cut(s) 428, 448, 969
BstMWI GCNNNNNNNGC 3 cut(s) 14, 71, 1241
BstNI CCWGG 3 cut(s) 698, 998, 1106
BstNSI RCATGY 2 cut(s) 358, 1141
BstPAI GACNNNNGTC 1 cut(s) 1079
BstSCI CCNGG 3 cut(s) 696, 996, 1104
BstSFI CTRYAG 2 cut(s) 306, 1077
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 2 cut(s) 268, 292
BstX2I RGATCY 1 cut(s) 969
BstYI RGATCY 1 cut(s) 969
BsuRI GGCC 2 cut(s) 714, 1192
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 4 cut(s) 220, 224, 400, 1159
BtsIMutI CAGTG 2 cut(s) 742, 1063
BveI ACCTGC 2 cut(s) 121, 586
Cac8I GCNNGC 1 cut(s) 1133
CaiI CAGNNNCTG 2 cut(s) 1072, 1091
CciI TCATGA 1 cut(s) 1006
CfoI GCGC 2 cut(s) 65, 1244
Cfr13I GGNCC 1 cut(s) 1191
CseI GACGC 1 cut(s) 668
Csp6I GTAC 2 cut(s) 453, 958
CviAII CATG 5 cut(s) 209, 355, 506, 1007, 1138
CviQI GTAC 2 cut(s) 453, 958
DdeI CTNAG 4 cut(s) 52, 1084, 1161, 1182
DpnI GATC 3 cut(s) 430, 450, 971
DpnII GATC 3 cut(s) 428, 448, 969
EaeI YGGCCR 1 cut(s) 712
Eam1104I CTCTTC 1 cut(s) 1021
EarI CTCTTC 1 cut(s) 1021
Ecl136II GAGCTC 1 cut(s) 1012
Eco24I GRGCYC 1 cut(s) 1014
Eco32I GATATC 1 cut(s) 1096
Eco53kI GAGCTC 1 cut(s) 1012
Eco57I CTGAAG 1 cut(s) 1049
EcoICRI GAGCTC 1 cut(s) 1012
EcoRI GAATTC 1 cut(s) 823
EcoRII CCWGG 3 cut(s) 696, 996, 1104
EcoRV GATATC 1 cut(s) 1096
EcoT38I GRGCYC 1 cut(s) 1014
Esp3I CGTCTC 1 cut(s) 461
FaeI CATG 5 cut(s) 212, 358, 509, 1010, 1141
FaqI GGGAC 1 cut(s) 1067
FatI CATG 5 cut(s) 208, 354, 505, 1006, 1137
FauI CCCGC 1 cut(s) 1040
FauNDI CATATG 1 cut(s) 433
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 2 cut(s) 282, 306
FokI GGATG 4 cut(s) 211, 227, 407, 1166
FriOI GRGCYC 1 cut(s) 1014
Fsp4HI GCNGC 2 cut(s) 282, 306
FspBI CTAG 3 cut(s) 174, 377, 912
GlaI GCGC 2 cut(s) 64, 1243
GluI GCNGC 2 cut(s) 282, 306
GsuI CTGGAG 4 cut(s) 534, 718, 1019, 1049
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 714, 1192
HapII CCGG 2 cut(s) 35, 233
HgaI GACGC 1 cut(s) 668
HhaI GCGC 2 cut(s) 65, 1244
Hin1II CATG 5 cut(s) 212, 358, 509, 1010, 1141
Hin6I GCGC 2 cut(s) 63, 1242
HinP1I GCGC 2 cut(s) 63, 1242
HincII GTYRAC 2 cut(s) 643, 934
HindII GTYRAC 2 cut(s) 643, 934
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 7 cut(s) 56, 99, 478, 809, 907, 1003, 1024
HpaII CCGG 2 cut(s) 35, 233
HphI GGTGA 3 cut(s) 638, 757, 812
Hpy166II GTNNAC 3 cut(s) 607, 643, 934
Hpy188I TCNGA 2 cut(s) 55, 1074
Hpy188III TCNNGA 5 cut(s) 392, 551, 683, 1007, 1028
Hpy8I GTNNAC 3 cut(s) 607, 643, 934
Hpy99I CGWCG 1 cut(s) 684
HpyAV CCTTC 2 cut(s) 165, 1170
HpyCH4III ACNGT 4 cut(s) 193, 562, 1058, 1123
HpyCH4IV ACGT 5 cut(s) 470, 630, 888, 942, 951
HpyCH4V TGCA 6 cut(s) 116, 130, 308, 595, 791, 1079
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 71, 1241
HpyF3I CTNAG 4 cut(s) 52, 1084, 1161, 1182
HpySE526I ACGT 5 cut(s) 470, 630, 888, 942, 951
Hsp92II CATG 5 cut(s) 212, 358, 509, 1010, 1141
HspAI GCGC 2 cut(s) 63, 1242
Kzo9I GATC 3 cut(s) 428, 448, 969
LmnI GCTCC 2 cut(s) 279, 988
Lsp1109I GCAGC 2 cut(s) 268, 292
LweI GCATC 4 cut(s) 125, 582, 771, 778
MaeI CTAG 3 cut(s) 174, 377, 912
MaeII ACGT 5 cut(s) 470, 630, 888, 942, 951
MaeIII GTNAC 3 cut(s) 583, 626, 760
MalI GATC 3 cut(s) 430, 450, 971
MboI GATC 3 cut(s) 428, 448, 969
MboII GAAGA 7 cut(s) 33, 289, 601, 679, 857, 1008, 1220
MflI RGATCY 1 cut(s) 969
MhlI GDGCHC 3 cut(s) 276, 985, 1014
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 6 cut(s) 91, 254, 384, 423, 717, 823
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 6 cut(s) 50, 93, 818, 901, 1012, 1018
Mox20I TGGCCA 1 cut(s) 714
MscI TGGCCA 1 cut(s) 714
MseI TTAA 5 cut(s) 249, 473, 501, 510, 945
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 714
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 2 cut(s) 35, 233
MspR9I CCNGG 3 cut(s) 698, 998, 1106
Mva1269I GAATGC 1 cut(s) 681
MvaI CCWGG 3 cut(s) 698, 998, 1106
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 3 cut(s) 14, 71, 1241
NdeI CATATG 1 cut(s) 433
NdeII GATC 3 cut(s) 428, 448, 969
NlaIII CATG 5 cut(s) 212, 358, 509, 1010, 1141
NlaIV GGNNCC 1 cut(s) 971
NmuCI GTSAC 2 cut(s) 626, 760
NspI RCATGY 2 cut(s) 358, 1141
PagI TCATGA 1 cut(s) 1006
PcsI WCGNNNNNNNCGW 1 cut(s) 948
PctI GAATGC 1 cut(s) 681
PfeI GAWTC 1 cut(s) 478
Pfl23II CGTACG 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 741
PfoI TCCNGGA 2 cut(s) 696, 996
PkrI GCNGC 2 cut(s) 283, 307
PleI GAGTC 6 cut(s) 50, 93, 817, 901, 1011, 1018
PpsI GAGTC 6 cut(s) 50, 93, 817, 901, 1011, 1018
PshAI GACNNNNGTC 1 cut(s) 1079
Psp124BI GAGCTC 1 cut(s) 1014
Psp6I CCWGG 3 cut(s) 696, 996, 1104
PspGI CCWGG 3 cut(s) 696, 996, 1104
PspLI CGTACG 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 971
PspPI GGNCC 1 cut(s) 1191
PstI CTGCAG 2 cut(s) 310, 1081
PstNI CAGNNNCTG 2 cut(s) 1072, 1091
PsuI RGATCY 1 cut(s) 969
RsaI GTAC 2 cut(s) 454, 959
RsaNI GTAC 2 cut(s) 453, 958
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 1014
SaqAI TTAA 5 cut(s) 249, 473, 501, 510, 945
SatI GCNGC 2 cut(s) 282, 306
Sau3AI GATC 3 cut(s) 428, 448, 969
Sau96I GGNCC 1 cut(s) 1191
SchI GAGTC 6 cut(s) 50, 93, 818, 901, 1012, 1018
ScrFI CCNGG 3 cut(s) 698, 998, 1106
SduI GDGCHC 3 cut(s) 276, 985, 1014
SfaNI GCATC 4 cut(s) 125, 582, 771, 778
SfcI CTRYAG 2 cut(s) 306, 1077
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 4 cut(s) 58, 147, 974, 1148
SmoI CTYRAG 4 cut(s) 58, 147, 974, 1148
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 6 cut(s) 91, 254, 384, 423, 717, 823
SsiI CCGC 4 cut(s) 610, 798, 884, 1047
SspMI CTAG 3 cut(s) 174, 377, 912
SstI GAGCTC 1 cut(s) 1014
StyD4I CCNGG 3 cut(s) 696, 996, 1104
TaaI ACNGT 4 cut(s) 193, 562, 1058, 1123
TaiI ACGT 5 cut(s) 473, 633, 891, 945, 954
TaqI TCGA 2 cut(s) 107, 1144
TasI AATT 6 cut(s) 91, 254, 384, 423, 717, 823
TatI WGTACW 1 cut(s) 957
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 5 cut(s) 249, 473, 501, 510, 945
Tru9I TTAA 5 cut(s) 249, 473, 501, 510, 945
TscAI CASTG 2 cut(s) 742, 1063
TseFI GTSAC 2 cut(s) 626, 760
TseI GCWGC 2 cut(s) 281, 305
Tsp45I GTSAC 2 cut(s) 626, 760
TspDTI ATGAA 6 cut(s) 213, 235, 450, 491, 767, 836
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 2 cut(s) 742, 1063
Van91I CCANNNNNTGG 1 cut(s) 741
XapI RAATTY 2 cut(s) 717, 823
XceI RCATGY 2 cut(s) 358, 1141
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 606
XspI CTAG 3 cut(s) 174, 377, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.