Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005858

Physical Location & Seq

Genomic Coordinates Forward (+)

5464345 .. 5466376

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G074700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGTGCTTACATCTGCTCCACCAACACTCCCCATGCCAAGGTTGCTATCAACCATCCCTACAAATAAATCAATATCATGTTGTGTAGGAATAAATTATGGCTGTAGTCAAAGTAAGCCTAATTCTATTGATTTTCAAGCAAAGGTCTTTCCCAAAGAAAATGTCATCACTTCCCCAAAACAAGATGATAAAACTGTCACACCCGCAGAGAAAATACCACAACATTTGAACTGGGAATCGAGGAAGTTCCACTGGGTTTATGACACTTTTGGTGGAAAATTGGGGCAGGAGGGGCTTGTTTTTCAACAGAACTTCTCAATTAGATCATATGATTTAGGCCCTGACGGCAAAGCAACCATAGGGTGCTTGATGGAACGCTTACTGGAAACATCAGTTCAGCATTGTAGGAGTCTTGGGCTCTATGCTGGTGGTTTGGGTTCAACACCAGAGATGACCAAAAGAGGCCTAGTATGGGTGCTGTGTAAATTGCAGACTGTAGTGGAAAAATATCCTTCTTGGGCTGAAGTTATTCAAATAGATACCTGGACTGGTGCATCAGGAAACAATGGTCTGTTCCGGGATTGGATCGTTCGTGATTACAGCACAGGACAGATCTTGATTCGAGCAACGGGTCTTCTTATGCTGATGCACATGAAGACAAGGAAATTTTCTAAAGGTACAGCAGAAATCACAGATGAGTTAAGATCTGCTCTCATGGATTCTGATCCTCTCATTGACATCAACAATGCTAAACTACGACGATTGGATATTGATGCTAGAAACTATTTTCAAACATCTGTAGCAAAGCCTGGTTGGAGTGATTTGGATGTCAATCAGCACGTGAGCAGTGCAAAATACATAGACTGGGTTTTCAAGAGCATTCCCTTCTCAGTGCTGGAGACTCATGAGCTTTCGTCTATGACGTTGGAGTATCGAAGTGAGTGTCGGAGGGACAGCGCGGTGCAGTCTCTGACTGCAGTTGCTAGAGATGGAACAGGTGACTCAACTCATAACCAAGGGGTAGAGTTTGATCACTTGCTTCGCCTCGAGACAGGGTCGGAAGTTTTGAGGGCAAGGACCGTGTGGAAGCCAATATGTGATGGCTTTTTAAGCACACTGAAGATTCCAGCAACAAATGGATGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE

Protein Analysis

383

Amino Acids

42.66

Weight (kDa)

8.02

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08510
fragaria_vesca	FvH4_1g04250 FvH4_1g04250 FvH4_1g04250 FvH4_6g30873
malus_domestica	MD02G1042500.v1.1 MD02G1062000.v1.1 MD09G1215700.v1.1
prunus_persica	Prupe.3G074600_v2.0.a1 Prupe.3G074600_v2.0.a1 Prupe.3G074700_v2.0.a1 Prupe.7G234600_v2.0.a1 Prupe.7G234600_v2.0.a1 Prupe.7G234600_v2.0.a1
pyrus_communis	pycom02g03520 pycom15g16310
rosa_chinensis	RchiOBHm_Chr2g0089811
rosa_laevigata	RLG00000016057
rosa_multiflora	Rmu_sc0000665.1_g000007
rosa_roxburghii	Rroxscaffold_2G00151600
rosa_rugosa	Rorug02G0003400 Rorug02G0003500
rosa_samantha	Rh2AG048600 Rh2AG389900 Rh2BG047400 Rh2CG049500 Rh2CG377400
rosa_wichuraiana	Rw2G004180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	959
AciI	CCGC	2 cut(s)	204, 959
AclWI	GGATC	2 cut(s)	593, 719
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	2 cut(s)	543, 1139
AcvI	CACGTG	1 cut(s)	841
AfaI	GTAC	2 cut(s)	679, 1144
AfiI	CCNNNNNNNGG	2 cut(s)	39, 472
AgsI	TTSAA	7 cut(s)	137, 229, 305, 441, 533, 791, 874
AjnI	CCWGG	2 cut(s)	542, 808
AluBI	AGCT	1 cut(s)	910
AluI	AGCT	1 cut(s)	910
Alw26I	GTCTC	3 cut(s)	893, 972, 1043
AlwI	GGATC	2 cut(s)	593, 719
AlwNI	CAGNNNCTG	1 cut(s)	970
Ama87I	CYCGRG	1 cut(s)	1046
AoxI	GGCC	2 cut(s)	337, 463
ApoI	RAATTY	1 cut(s)	665
ArsI	GACNNNNNNTTYG	4 cut(s)	147, 179, 928, 960
Asp700I	GAANNNNTTC	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	959
AspS9I	GGNCC	2 cut(s)	338, 1077
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	1010
AvaI	CYCGRG	1 cut(s)	1046
AvaII	GGWCC	1 cut(s)	1077
BanII	GRGCYC	1 cut(s)	420
BbrPI	CACGTG	1 cut(s)	841
BbsI	GAAGAC	2 cut(s)	626, 662
BccI	CCATC	4 cut(s)	62, 364, 983, 1094
BceAI	ACGGC	1 cut(s)	361
BciT130I	CCWGG	2 cut(s)	544, 810
BclI	TGATCA	1 cut(s)	1030
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	3 cut(s)	893, 972, 1043
BfaI	CTAG	3 cut(s)	467, 777, 984
BfmI	CTRYAG	4 cut(s)	103, 495, 798, 975
BglI	GCCNNNNNGGC	1 cut(s)	345
BglII	AGATCT	2 cut(s)	612, 704
Bme1390I	CCNGG	3 cut(s)	544, 578, 810
Bme18I	GGWCC	1 cut(s)	1077
BmeT110I	CYCGRG	1 cut(s)	1046
BmgT120I	GGNCC	2 cut(s)	338, 1077
BmrFI	CCNGG	3 cut(s)	544, 578, 810
BmrI	ACTGGG	3 cut(s)	241, 262, 874
BmsI	GCATC	3 cut(s)	563, 636, 763
BmuI	ACTGGG	3 cut(s)	241, 262, 874
BpiI	GAAGAC	2 cut(s)	626, 662
BpmI	CTGGAG	1 cut(s)	917
BpuMI	CCSGG	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	841
BsaBI	GATNNNNATC	2 cut(s)	723, 831
BsaJI	CCNNGG	2 cut(s)	38, 1015
BsaXI	ACNNNNNCTCC	3 cut(s)	12, 31, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 472
Bse1I	ACTGG	5 cut(s)	236, 257, 387, 553, 869
Bse8I	GATNNNNATC	2 cut(s)	723, 831
BseBI	CCWGG	2 cut(s)	544, 810
BseDI	CCNNGG	2 cut(s)	38, 1015
BseGI	GGATG	3 cut(s)	54, 832, 1145
BseJI	GATNNNNATC	2 cut(s)	723, 831
BseLI	CCNNNNNNNGG	2 cut(s)	39, 472
BseMII	CTCAG	1 cut(s)	903
BseNI	ACTGG	5 cut(s)	236, 257, 387, 553, 869
BsgI	GTGCAG	1 cut(s)	983
Bsh1236I	CGCG	1 cut(s)	959
BshFI	GGCC	2 cut(s)	339, 465
BsiHKCI	CYCGRG	1 cut(s)	1046
BsiSI	CCGG	1 cut(s)	577
BslFI	GGGAC	1 cut(s)	965
BslI	CCNNNNNNNGG	2 cut(s)	39, 472
BsmAI	GTCTC	3 cut(s)	893, 972, 1043
BsmFI	GGGAC	1 cut(s)	965
BsmI	GAATGC	1 cut(s)	879
BsnI	GGCC	2 cut(s)	339, 465
BsoBI	CYCGRG	1 cut(s)	1046
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	1142
Bsp143I	GATC	6 cut(s)	323, 585, 612, 704, 724, 1030
BspACI	CCGC	2 cut(s)	204, 959
BspANI	GGCC	2 cut(s)	339, 465
BspCNI	CTCAG	1 cut(s)	902
BspFNI	CGCG	1 cut(s)	959
BspHI	TCATGA	1 cut(s)	904
BspMAI	CTGCAG	1 cut(s)	979
BspPI	GGATC	2 cut(s)	593, 719
BsrGI	TGTACA	1 cut(s)	1142
BsrI	ACTGG	5 cut(s)	236, 257, 387, 553, 869
BssECI	CCNNGG	2 cut(s)	38, 1015
BssMI	GATC	6 cut(s)	323, 585, 612, 704, 724, 1030
BssT1I	CCWWGG	2 cut(s)	38, 1015
Bst2UI	CCWGG	2 cut(s)	544, 810
Bst4CI	ACNGT	3 cut(s)	196, 496, 1081
BstAUI	TGTACA	1 cut(s)	1142
BstBAI	YACGTR	1 cut(s)	841
BstDEI	CTNAG	1 cut(s)	889
BstF5I	GGATG	3 cut(s)	54, 832, 1145
BstFNI	CGCG	1 cut(s)	959
BstHHI	GCGC	1 cut(s)	959
BstKTI	GATC	6 cut(s)	326, 588, 615, 707, 727, 1033
BstMAI	GTCTC	3 cut(s)	893, 972, 1043
BstMBI	GATC	6 cut(s)	323, 585, 612, 704, 724, 1030
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 292, 345, 1110
BstNI	CCWGG	2 cut(s)	544, 810
BstSCI	CCNGG	3 cut(s)	542, 576, 808
BstSFI	CTRYAG	4 cut(s)	103, 495, 798, 975
BstUI	CGCG	1 cut(s)	959
BstV2I	GAAGAC	2 cut(s)	626, 662
BstX2I	RGATCY	2 cut(s)	612, 704
BstYI	RGATCY	2 cut(s)	612, 704
BsuRI	GGCC	2 cut(s)	339, 465
BtsCI	GGATG	3 cut(s)	54, 832, 1145
BtsI	GCAGTG	1 cut(s)	853
BtsIMutI	CAGTG	4 cut(s)	250, 853, 897, 1115
CaiI	CAGNNNCTG	1 cut(s)	970
CciI	TCATGA	1 cut(s)	904
CfoI	GCGC	1 cut(s)	959
Cfr13I	GGNCC	2 cut(s)	338, 1077
Csp6I	GTAC	2 cut(s)	678, 1143
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	5 cut(s)	34, 78, 652, 715, 905
CviQI	GTAC	2 cut(s)	678, 1143
DdeI	CTNAG	1 cut(s)	889
DpnI	GATC	6 cut(s)	325, 587, 614, 706, 726, 1032
DpnII	GATC	6 cut(s)	323, 585, 612, 704, 724, 1030
Eco130I	CCWWGG	2 cut(s)	38, 1015
Eco147I	AGGCCT	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	1077
Eco57I	CTGAAG	2 cut(s)	543, 1139
Eco72I	CACGTG	1 cut(s)	841
Eco88I	CYCGRG	1 cut(s)	1046
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	542, 808
EcoT14I	CCWWGG	2 cut(s)	38, 1015
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	38, 1015
FaeI	CATG	5 cut(s)	37, 81, 655, 718, 908
FaqI	GGGAC	1 cut(s)	965
FatI	CATG	5 cut(s)	33, 77, 651, 714, 904
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	1030
FokI	GGATG	2 cut(s)	41, 839
FriOI	GRGCYC	1 cut(s)	420
FspBI	CTAG	3 cut(s)	467, 777, 984
GlaI	GCGC	1 cut(s)	958
GsuI	CTGGAG	1 cut(s)	917
HaeIII	GGCC	2 cut(s)	339, 465
HapII	CCGG	1 cut(s)	577
HhaI	GCGC	1 cut(s)	959
Hin1II	CATG	5 cut(s)	37, 81, 655, 718, 908
Hin6I	GCGC	1 cut(s)	957
HinP1I	GCGC	1 cut(s)	957
HinfI	GANTC	7 cut(s)	236, 409, 619, 719, 901, 1001, 1123
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	1 cut(s)	1010
Hpy188I	TCNGA	4 cut(s)	724, 948, 972, 1060
Hpy188III	TCNNGA	6 cut(s)	558, 593, 616, 874, 905, 1048
Hpy99I	CGWCG	1 cut(s)	762
HpyAV	CCTTC	2 cut(s)	522, 895
HpyCH4III	ACNGT	3 cut(s)	196, 496, 1081
HpyCH4IV	ACGT	2 cut(s)	840, 923
HpyCH4V	TGCA	6 cut(s)	490, 554, 649, 851, 964, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 292, 345, 1110
HpyF3I	CTNAG	1 cut(s)	889
HpySE526I	ACGT	2 cut(s)	840, 923
Hsp92II	CATG	5 cut(s)	37, 81, 655, 718, 908
HspAI	GCGC	1 cut(s)	957
Ksp22I	TGATCA	1 cut(s)	1030
Kzo9I	GATC	6 cut(s)	323, 585, 612, 704, 724, 1030
LmnI	GCTCC	1 cut(s)	22
LweI	GCATC	3 cut(s)	563, 636, 763
MaeI	CTAG	3 cut(s)	467, 777, 984
MaeII	ACGT	2 cut(s)	840, 923
MaeIII	GTNAC	2 cut(s)	196, 998
MalI	GATC	6 cut(s)	325, 587, 614, 706, 726, 1032
MboI	GATC	6 cut(s)	323, 585, 612, 704, 724, 1030
MboII	GAAGA	3 cut(s)	626, 667, 1132
MflI	RGATCY	2 cut(s)	612, 704
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	6 cut(s)	94, 121, 278, 318, 485, 665
MlyI	GAGTC	3 cut(s)	418, 895, 995
MmeI	TCCRAC	4 cut(s)	794, 906, 926, 1038
MnlI	CCTC	7 cut(s)	234, 283, 455, 738, 942, 1055, 1062
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	2 cut(s)	701, 1109
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	3 cut(s)	544, 578, 810
Mva1269I	GAATGC	1 cut(s)	879
MvaI	CCWGG	2 cut(s)	544, 810
MvnI	CGCG	1 cut(s)	959
MwoI	GCNNNNNNNGC	4 cut(s)	43, 292, 345, 1110
NciI	CCSGG	1 cut(s)	578
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	6 cut(s)	323, 585, 612, 704, 724, 1030
NlaIII	CATG	5 cut(s)	37, 81, 655, 718, 908
NmuCI	GTSAC	2 cut(s)	196, 998
PaeR7I	CTCGAG	1 cut(s)	1046
PagI	TCATGA	1 cut(s)	904
PceI	AGGCCT	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	920
PctI	GAATGC	1 cut(s)	879
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	4 cut(s)	236, 619, 719, 1123
PflFI	GACNNNGTC	1 cut(s)	1054
PfoI	TCCNGGA	1 cut(s)	576
PleI	GAGTC	3 cut(s)	417, 895, 995
PmaCI	CACGTG	1 cut(s)	841
PmlI	CACGTG	1 cut(s)	841
PpsI	GAGTC	3 cut(s)	417, 895, 995
Ppu21I	YACGTR	1 cut(s)	841
Psp6I	CCWGG	2 cut(s)	542, 808
PspCI	CACGTG	1 cut(s)	841
PspGI	CCWGG	2 cut(s)	542, 808
PspPI	GGNCC	2 cut(s)	338, 1077
PstI	CTGCAG	1 cut(s)	979
PstNI	CAGNNNCTG	1 cut(s)	970
PsuI	RGATCY	2 cut(s)	612, 704
PsyI	GACNNNGTC	1 cut(s)	1054
RsaI	GTAC	2 cut(s)	679, 1144
RsaNI	GTAC	2 cut(s)	678, 1143
SaqAI	TTAA	2 cut(s)	701, 1109
Sau3AI	GATC	6 cut(s)	323, 585, 612, 704, 724, 1030
Sau96I	GGNCC	2 cut(s)	338, 1077
SchI	GAGTC	3 cut(s)	418, 895, 995
ScrFI	CCNGG	3 cut(s)	544, 578, 810
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	8 cut(s)	44, 147, 545, 679, 843, 912, 926, 1000
SfaNI	GCATC	3 cut(s)	563, 636, 763
SfcI	CTRYAG	4 cut(s)	103, 495, 798, 975
Sfr274I	CTCGAG	1 cut(s)	1046
SinI	GGWCC	1 cut(s)	1077
SlaI	CTCGAG	1 cut(s)	1046
SmlI	CTYRAG	1 cut(s)	1046
SmoI	CTYRAG	1 cut(s)	1046
Sse9I	AATT	6 cut(s)	94, 121, 278, 318, 485, 665
SseBI	AGGCCT	1 cut(s)	465
SsiI	CCGC	2 cut(s)	204, 959
SspMI	CTAG	3 cut(s)	467, 777, 984
StuI	AGGCCT	1 cut(s)	465
StyD4I	CCNGG	3 cut(s)	542, 576, 808
StyI	CCWWGG	2 cut(s)	38, 1015
TaaI	ACNGT	3 cut(s)	196, 496, 1081
TaiI	ACGT	2 cut(s)	843, 926
TaqI	TCGA	4 cut(s)	239, 622, 934, 1047
TasI	AATT	6 cut(s)	94, 121, 278, 318, 485, 665
TatI	WGTACW	1 cut(s)	1142
TfiI	GAWTC	4 cut(s)	236, 619, 719, 1123
Tru1I	TTAA	2 cut(s)	701, 1109
Tru9I	TTAA	2 cut(s)	701, 1109
TscAI	CASTG	4 cut(s)	257, 853, 897, 1122
TseFI	GTSAC	2 cut(s)	196, 998
Tsp45I	GTSAC	2 cut(s)	196, 998
TspDTI	ATGAA	1 cut(s)	668
TspRI	CASTG	4 cut(s)	257, 853, 897, 1122
Tth111I	GACNNNGTC	1 cut(s)	1054
VpaK11BI	GGWCC	1 cut(s)	1077
XapI	RAATTY	1 cut(s)	665
XhoI	CTCGAG	1 cut(s)	1046
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	3 cut(s)	467, 777, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.