Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005858

Physical Location & Seq

Genomic Coordinates Forward (+)

401364 .. 423406

Gene Structure 22043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0003500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCGACTCCCTCTGAACTGATCAGCAACAAGCAGGTGATACTGAGAGACTATGTCACCGGCTTCCCCAAAGAATCCGACATGGAATTGCGCAGTTCGGCCACAACCACACTGAAGCTGCCACAAGGTTCCACCGGGGTTCTCGTCAAGAATCTCTACTTGTCCTGCGATCCTTACATGAGAAACCGCATGACCAAACGTGAAACTGCCTCTTATGTCGAAACTTTCCATCCCGGTTCCCCTATAACCGGATTTGGAGTGGCTAAAGTTTTGGAGTCTGGGGATGCAAAGTTTGAGCAGGGCGACTTGATTTGGGGGATTACTGGCTGGGAAGAGTACAGTCTCATCACTGCAACACAGTCTCTCTTTAAGATTCACCACGACCCCAATATTCCTCTCTCTTATTATACTGGAATTCTCGGTATGCCTGGAATTACTGCTTATGCTGGTCTTTATGAGCTTTGCTCACCTAAGAAAGGAGAGACGGTCTATGTTTCAGCAGCATCTGGAGCAGTAGGTCAACTAGTTGGCCAGTTTGCCAAACTCATGGGTTGCTATGTTGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGATTTGCTGAAGAACAAGTTTGGGTTTGACGAGGCTTTCAATTATAAAGAAGAACCTAACTTGGATGCAGCTCTAAAAAGGTACGTTCCTGAAGGTATTGATATTTACTTTGAAAATGTTGGGGGAAAGATGCTGGATGCAGTGCTACCAAACATGAAGTTCCGGGGGCGAATTGCAGTTTGTGGGATGATATCCCAATATAACCTTGAGAAGCCTGAAGGTGTACACAATCTAATGTTCCTTGTTTGTAGAGAGGTCCGGATGCAAGGTTTTGCTGTTTTGAATTACTATCATCTTTACGAGAAGTTTCTTGAAACGGTTCTGCTTGACATAAAAAAAGGGAAGATTACATATGTGGAAGATGTAGTTGAAGGCCTCGAAAGTGCTCCATCGGCCCTGGTTGGACTCTTTACAGGTCGCAATGTCGGAAAGCAGGTTGTCGTTGTTTCCCGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000036 GO:0003674 GO:0003824 GO:0004312 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0140104 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE Acyl-thio_N

Protein Analysis

349

Amino Acids

38.58

Weight (kDa)

6.27

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	11 - 120	1.3e-26	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	171 - 302	3.6e-24	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	205 - 344	5.4e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08510
fragaria_vesca	FvH4_1g04250 FvH4_1g04250 FvH4_1g04250 FvH4_6g30873
malus_domestica	MD02G1042500.v1.1 MD02G1062000.v1.1 MD09G1215700.v1.1
prunus_persica	Prupe.3G074600_v2.0.a1 Prupe.3G074600_v2.0.a1 Prupe.3G074700_v2.0.a1 Prupe.7G234600_v2.0.a1 Prupe.7G234600_v2.0.a1 Prupe.7G234600_v2.0.a1
pyrus_communis	pycom02g03520 pycom15g16310
rosa_chinensis	RchiOBHm_Chr2g0089811
rosa_laevigata	RLG00000016057
rosa_multiflora	Rmu_sc0000665.1_g000007
rosa_roxburghii	Rroxscaffold_2G00151600
rosa_rugosa	Rorug02G0003400 Rorug02G0003500
rosa_samantha	Rh2AG048600 Rh2AG389900 Rh2BG047400 Rh2CG049500 Rh2CG377400
rosa_wichuraiana	Rw2G004180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AarI	CACCTGC	1 cut(s)	25
Acc16I	TGCGCA	1 cut(s)	92
Acc36I	ACCTGC	2 cut(s)	25, 1015
AccIII	TCCGGA	1 cut(s)	849
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	2 cut(s)	99, 529
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	4 cut(s)	134, 620, 702, 828
AfaI	GTAC	3 cut(s)	338, 674, 816
AfiI	CCNNNNNNNGG	2 cut(s)	248, 476
AgsI	TTSAA	5 cut(s)	631, 704, 874, 905, 962
AhlI	ACTAGT	1 cut(s)	523
AjnI	CCWGG	2 cut(s)	427, 987
AluBI	AGCT	3 cut(s)	118, 460, 662
AluI	AGCT	3 cut(s)	118, 460, 662
Alw21I	GWGCWC	1 cut(s)	979
Alw26I	GTCTC	4 cut(s)	42, 347, 366, 476
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	506
Ama87I	CYCGRG	1 cut(s)	1041
Aor13HI	TCCGGA	1 cut(s)	849
AoxI	GGCC	4 cut(s)	99, 529, 964, 984
ApeKI	GCWGC	3 cut(s)	118, 500, 659
ApoI	RAATTY	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	909
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	847, 985
AsuC2I	CCSGG	3 cut(s)	136, 234, 755
AsuHPI	GGTGA	4 cut(s)	49, 49, 368, 459
AvaI	CYCGRG	1 cut(s)	1041
AvaII	GGWCC	1 cut(s)	847
BalI	TGGCCA	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	979
BbvI	GCAGC	3 cut(s)	105, 512, 671
BccI	CCATC	2 cut(s)	237, 988
BciT130I	CCWGG	2 cut(s)	429, 989
BclI	TGATCA	1 cut(s)	21
BcnI	CCSGG	3 cut(s)	136, 234, 755
BcoDI	GTCTC	4 cut(s)	42, 347, 366, 476
BcuI	ACTAGT	1 cut(s)	523
BfaI	CTAG	1 cut(s)	524
BfuAI	ACCTGC	2 cut(s)	25, 1015
BisI	GCNGC	3 cut(s)	119, 501, 660
BlsI	GCNGC	3 cut(s)	120, 502, 661
Bme1390I	CCNGG	5 cut(s)	136, 234, 429, 755, 989
Bme18I	GGWCC	1 cut(s)	847
BmeT110I	CYCGRG	1 cut(s)	1041
BmgT120I	GGNCC	2 cut(s)	847, 985
BmiI	GGNNCC	2 cut(s)	130, 238
BmrFI	CCNGG	5 cut(s)	136, 234, 429, 755, 989
BmsI	GCATC	6 cut(s)	274, 512, 646, 711, 718, 843
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	818
BpuMI	CCSGG	3 cut(s)	136, 234, 755
BsaJI	CCNNGG	3 cut(s)	135, 754, 987
BsaWI	WCCGGW	2 cut(s)	248, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 476
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	3 cut(s)	328, 415, 532
Bse3DI	GCAATG	1 cut(s)	1018
BseAI	TCCGGA	1 cut(s)	849
BseBI	CCWGG	2 cut(s)	429, 989
BseDI	CCNNGG	3 cut(s)	135, 754, 987
BseGI	GGATG	6 cut(s)	229, 289, 661, 733, 783, 858
BseLI	CCNNNNNNNGG	2 cut(s)	248, 476
BseMI	GCAATG	1 cut(s)	1018
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	3 cut(s)	328, 415, 532
BseXI	GCAGC	3 cut(s)	105, 512, 671
BseYI	CCCAGC	1 cut(s)	327
BshFI	GGCC	4 cut(s)	101, 531, 966, 986
BsiHKAI	GWGCWC	1 cut(s)	979
BsiHKCI	CYCGRG	1 cut(s)	1041
BsiSI	CCGG	6 cut(s)	60, 135, 234, 249, 754, 850
BslI	CCNNNNNNNGG	2 cut(s)	248, 476
BsmAI	GTCTC	4 cut(s)	42, 347, 366, 476
BsmBI	CGTCTC	1 cut(s)	476
BsnI	GGCC	4 cut(s)	101, 531, 966, 986
BsoBI	CYCGRG	1 cut(s)	1041
Bsp1286I	GDGCHC	1 cut(s)	979
Bsp13I	TCCGGA	1 cut(s)	849
Bsp1407I	TGTACA	1 cut(s)	814
Bsp143I	GATC	2 cut(s)	21, 169
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	4 cut(s)	101, 531, 966, 986
BspCNI	CTCAG	1 cut(s)	36
BspEI	TCCGGA	1 cut(s)	849
BspLI	GGNNCC	2 cut(s)	130, 238
BspMI	ACCTGC	2 cut(s)	25, 1015
BspPI	GGATC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	1018
BsrFI	RCCGGY	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	814
BsrI	ACTGG	3 cut(s)	328, 415, 532
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	135, 754, 987
BssMI	GATC	2 cut(s)	21, 169
Bst2UI	CCWGG	2 cut(s)	429, 989
Bst4CI	ACNGT	4 cut(s)	341, 360, 487, 910
Bst6I	CTCTTC	1 cut(s)	327
BstAUI	TGTACA	1 cut(s)	814
BstDEI	CTNAG	2 cut(s)	44, 471
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	6 cut(s)	229, 289, 661, 733, 783, 858
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	2 cut(s)	24, 172
BstMAI	GTCTC	4 cut(s)	42, 347, 366, 476
BstMBI	GATC	2 cut(s)	21, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 983
BstNI	CCWGG	2 cut(s)	429, 989
BstSCI	CCNGG	5 cut(s)	134, 232, 427, 753, 987
BstV1I	GCAGC	3 cut(s)	105, 512, 671
BstXI	CCANNNNNNTGG	1 cut(s)	547
BsuRI	GGCC	4 cut(s)	101, 531, 966, 986
BtsCI	GGATG	6 cut(s)	229, 289, 661, 733, 783, 858
BtsI	GCAGTG	2 cut(s)	348, 738
BtsIMutI	CAGTG	3 cut(s)	110, 348, 738
BveI	ACCTGC	2 cut(s)	25, 1015
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	847, 985
Csp6I	GTAC	3 cut(s)	337, 673, 815
CviAII	CATG	5 cut(s)	82, 178, 190, 547, 745
CviQI	GTAC	3 cut(s)	337, 673, 815
DdeI	CTNAG	2 cut(s)	44, 471
DpnI	GATC	2 cut(s)	23, 171
DpnII	GATC	2 cut(s)	21, 169
EaeI	YGGCCR	2 cut(s)	99, 529
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	966
Eco32I	GATATC	1 cut(s)	783
Eco47I	GGWCC	1 cut(s)	847
Eco57I	CTGAAG	4 cut(s)	134, 620, 702, 828
Eco88I	CYCGRG	1 cut(s)	1041
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	427, 987
EcoRV	GATATC	1 cut(s)	783
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	5 cut(s)	85, 181, 193, 550, 748
FatI	CATG	5 cut(s)	81, 177, 189, 546, 744
FauNDI	CATATG	1 cut(s)	943
FbaI	TGATCA	1 cut(s)	21
Fnu4HI	GCNGC	3 cut(s)	119, 501, 660
FokI	GGATG	6 cut(s)	216, 296, 668, 740, 790, 865
Fsp4HI	GCNGC	3 cut(s)	119, 501, 660
FspBI	CTAG	1 cut(s)	524
FspI	TGCGCA	1 cut(s)	92
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	3 cut(s)	119, 501, 660
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	4 cut(s)	101, 531, 966, 986
HapII	CCGG	6 cut(s)	60, 135, 234, 249, 754, 850
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	5 cut(s)	85, 181, 193, 550, 748
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	521
HindII	GTYRAC	1 cut(s)	521
HinfI	GANTC	6 cut(s)	7, 74, 151, 275, 373, 996
HpaII	CCGG	6 cut(s)	60, 135, 234, 249, 754, 850
HphI	GGTGA	4 cut(s)	49, 49, 368, 459
Hpy166II	GTNNAC	3 cut(s)	521, 815, 817
Hpy188I	TCNGA	3 cut(s)	16, 79, 1019
Hpy188III	TCNNGA	6 cut(s)	148, 507, 680, 850, 902, 1041
Hpy8I	GTNNAC	3 cut(s)	521, 815, 817
HpyAV	CCTTC	3 cut(s)	677, 803, 956
HpyCH4III	ACNGT	4 cut(s)	341, 360, 487, 910
HpyCH4IV	ACGT	2 cut(s)	199, 675
HpyCH4V	TGCA	6 cut(s)	287, 353, 659, 731, 767, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 983
HpyF3I	CTNAG	2 cut(s)	44, 471
HpySE526I	ACGT	2 cut(s)	199, 675
Hsp92II	CATG	5 cut(s)	85, 181, 193, 550, 748
HspAI	GCGC	1 cut(s)	91
Kpn2I	TCCGGA	1 cut(s)	849
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	21, 169
LmnI	GCTCC	2 cut(s)	509, 982
Lsp1109I	GCAGC	3 cut(s)	105, 512, 671
LweI	GCATC	6 cut(s)	274, 512, 646, 711, 718, 843
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	2 cut(s)	199, 675
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	23, 171
MboI	GATC	2 cut(s)	21, 169
MboII	GAAGA	5 cut(s)	344, 613, 653, 946, 962
MhlI	GDGCHC	1 cut(s)	979
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	6 cut(s)	86, 414, 432, 631, 762, 874
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	2 cut(s)	284, 990
MmeI	TCCRAC	4 cut(s)	102, 544, 973, 997
MnlI	CCTC	6 cut(s)	22, 220, 405, 616, 838, 977
Mox20I	TGGCCA	1 cut(s)	531
MroI	TCCGGA	1 cut(s)	849
MroXI	GAANNNNTTC	1 cut(s)	909
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	531
MspI	CCGG	6 cut(s)	60, 135, 234, 249, 754, 850
MspR9I	CCNGG	5 cut(s)	136, 234, 429, 755, 989
MvaI	CCWGG	2 cut(s)	429, 989
MwoI	GCNNNNNNNGC	2 cut(s)	509, 983
NciI	CCSGG	3 cut(s)	136, 234, 755
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	2 cut(s)	21, 169
NlaIII	CATG	5 cut(s)	85, 181, 193, 550, 748
NlaIV	GGNNCC	2 cut(s)	130, 238
NmuCI	GTSAC	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	92
PaqCI	CACCTGC	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	966
PdmI	GAANNNNTTC	1 cut(s)	909
PfeI	GAWTC	3 cut(s)	74, 151, 373
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	120, 502, 661
PleI	GAGTC	2 cut(s)	283, 990
PpsI	GAGTC	2 cut(s)	283, 990
PsiI	TTATAA	1 cut(s)	636
Psp6I	CCWGG	2 cut(s)	427, 987
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	2 cut(s)	427, 987
PspN4I	GGNNCC	2 cut(s)	130, 238
PspPI	GGNCC	2 cut(s)	847, 985
PstNI	CAGNNNCTG	1 cut(s)	506
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	3 cut(s)	338, 674, 816
RsaNI	GTAC	3 cut(s)	337, 673, 815
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	119, 501, 660
Sau3AI	GATC	2 cut(s)	21, 169
Sau96I	GGNCC	2 cut(s)	847, 985
SchI	GAGTC	2 cut(s)	284, 990
ScrFI	CCNGG	5 cut(s)	136, 234, 429, 755, 989
SduI	GDGCHC	1 cut(s)	979
SfaNI	GCATC	6 cut(s)	274, 512, 646, 711, 718, 843
SinI	GGWCC	1 cut(s)	847
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
SpeI	ACTAGT	1 cut(s)	523
Sse9I	AATT	6 cut(s)	86, 414, 432, 631, 762, 874
SseBI	AGGCCT	1 cut(s)	966
SsiI	CCGC	1 cut(s)	187
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	524
StuI	AGGCCT	1 cut(s)	966
StyD4I	CCNGG	5 cut(s)	134, 232, 427, 753, 987
TaaI	ACNGT	4 cut(s)	341, 360, 487, 910
TaiI	ACGT	2 cut(s)	202, 678
TaqI	TCGA	2 cut(s)	219, 969
TasI	AATT	6 cut(s)	86, 414, 432, 631, 762, 874
TatI	WGTACW	2 cut(s)	336, 814
TfiI	GAWTC	3 cut(s)	74, 151, 373
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	3 cut(s)	117, 355, 738
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	118, 500, 659
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	761
TspRI	CASTG	3 cut(s)	117, 355, 738
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	847
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	909
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.