Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005858

Physical Location & Seq

Genomic Coordinates Reverse (-)

3542861 .. 3545185

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016057

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGTCGCCACTGCTGCTACTTCATCGTTCTTTCCGGTTCCTTCTTCCGACTCTGGTGCTAAGAATTCCAAGCTTGGAAATGGGAATGCCAAGTTAGGACTCAAATCAAAATCTGCTGCGGCTGGTTTGCAGGTAAAGGCCAATGCTCAAGCACCTCCAAAAATAAATGGCACTAGCGTTGGTTTGGCCACTGTCGAAAGTGGAAAGAATGGGGATGACATGCACGGACTTGCTCAGTCCCCTCCTGCACGGACTTTCATTAACCAATTACCTGATTGGAGTATGCTTCTTGCTGCTATAACCACAATCTTCTTGGCAGCAGAAAAGCAATGGATGATGCTTGATTGGAAACCCAAGCGGCCTGATATGCTAATTGACCCTTTTGGTTTGGGAAGAATTGTTCAGGATGGTCTTGTATTCCGCCAGAACTTCTCCATTAGATCGTATGAAATAGGTGCTGATCGAACGGCTTCAATAGAGACATTAATGAATCATTTACAGGAAACAGCGCTTAATCATGTTAAGACTGCTGGCCTCTTAGGGGAAGGCTTTGGTTCAACTCCAGAGATGTCCATAAGGAACCTTATATGGGTGGTAACCAAAATGCAGGTTAAGGTAGACCGCTATCCTACTTGGGGTGATGTTGTTCAAGTTGACACTTGGGTTAGTGCCTCCGGGAAGAATGGTATGCGGCGTGATTGGATTATCCATGATTGCAAAACAGGACAAATTTTAACAAGAGCCTCCAGTGTGTGCGTGATGATGAATAAACTGACTAGGAGGTTATCCAAAATACCTGATGAGGTTCGGAGTGAAATAGAGCCTTACTTTATGAATTCTGCTCCTGTTGTGGAGGAGGATGGCAGGAAACTGCAGAAACTTGACGACAATACTGCGGACTTTGTCCGTACTGGTTTAACTCCTAGGTGGAGTGATCTGGATATCAACCAGCATGTTAACAATGTGAAGTACATTGGCTGGATCCTTGAGAGTGCTCCCTTGCCAATCTTGGAGAGCCATGAGCTTTCTTCTATGTCTATGGAGTATAGGAGGGAGTGTGGAAGGGACAGTGTGCTTCAGTCCCTGACTGCAGTGTCTGGTGCTGAGATTGGGCATTTGGCAAGTACTGGCAACGTTGAGTGCCAGCACTTGCTTCGACTCGAGGGCGGGTCTGAGATTGTGAGGGGAAGGACTGGTTGGAGACCCAAAAAACCCAACAATATCGGGATTATGGGTGGGCTTCCAGCAGAAAACGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000036 GO:0003674 GO:0003824 GO:0004312 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0140104 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE Acyl-thio_N

Protein Analysis

420

Amino Acids

45.91

Weight (kDa)

8.56

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-thio_N	PF12590	1 - 126	9.3e-52	Acyl-ATP thioesterase
Acyl-ACP_TE	PF01643	137 - 273	2.2e-40	Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C	PF20791	299 - 401	5.3e-27	Acyl-ACP thioesterase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08510
fragaria_vesca	FvH4_1g04250 FvH4_1g04250 FvH4_1g04250 FvH4_6g30873
malus_domestica	MD02G1042500.v1.1 MD02G1062000.v1.1 MD09G1215700.v1.1
prunus_persica	Prupe.3G074600_v2.0.a1 Prupe.3G074600_v2.0.a1 Prupe.3G074700_v2.0.a1 Prupe.7G234600_v2.0.a1 Prupe.7G234600_v2.0.a1 Prupe.7G234600_v2.0.a1
pyrus_communis	pycom02g03520 pycom15g16310
rosa_chinensis	RchiOBHm_Chr2g0089811
rosa_laevigata	RLG00000016057
rosa_multiflora	Rmu_sc0000665.1_g000007
rosa_roxburghii	Rroxscaffold_2G00151600
rosa_rugosa	Rorug02G0003400 Rorug02G0003500
rosa_samantha	Rh2AG048600 Rh2AG389900 Rh2BG047400 Rh2CG049500 Rh2CG377400
rosa_wichuraiana	Rw2G004180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1093
Acc36I	ACCTGC	2 cut(s)	121, 598
AccI	GTMKAC	1 cut(s)	618
AciI	CCGC	7 cut(s)	119, 358, 421, 622, 691, 896, 1167
AclI	AACGTT	1 cut(s)	1134
AclWI	GGATC	2 cut(s)	976, 989
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	3 cut(s)	64, 729, 835
AcuI	CTGAAG	1 cut(s)	1061
AfaI	GTAC	3 cut(s)	910, 971, 1126
AfeI	AGCGCT	1 cut(s)	510
AfiI	CCNNNNNNNGG	3 cut(s)	541, 589, 635
AgsI	TTSAA	3 cut(s)	474, 558, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	1180, 1212
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	2 cut(s)	73, 1024
AluI	AGCT	2 cut(s)	73, 1024
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	2 cut(s)	473, 1195
AlwI	GGATC	2 cut(s)	976, 989
AlwNI	CAGNNNCTG	2 cut(s)	1084, 1097
Ama87I	CYCGRG	1 cut(s)	1160
Aor51HI	AGCGCT	1 cut(s)	510
AoxI	GGCC	4 cut(s)	138, 186, 359, 532
ApeKI	GCWGC	4 cut(s)	14, 116, 293, 317
ApoI	RAATTY	3 cut(s)	64, 729, 835
AseI	ATTAAT	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	469
AspA2I	CCTAGG	1 cut(s)	923
AspLEI	GCGC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	1 cut(s)	650
AvaI	CYCGRG	1 cut(s)	1160
AvrII	CCTAGG	1 cut(s)	923
BalI	TGGCCA	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	981
Bbv12I	GWGCWC	1 cut(s)	997
BbvI	GCAGC	3 cut(s)	103, 280, 329
BccI	CCATC	2 cut(s)	401, 854
BceAI	ACGGC	1 cut(s)	483
BcgI	CGANNNNNNTGC	6 cut(s)	38, 72, 875, 909, 1136, 1170
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	2 cut(s)	473, 1195
BfaI	CTAG	3 cut(s)	174, 777, 924
BfmI	CTRYAG	2 cut(s)	872, 1089
BfoI	RGCGCY	1 cut(s)	512
BfuAI	ACCTGC	2 cut(s)	121, 598
BisI	GCNGC	7 cut(s)	15, 117, 120, 294, 318, 359, 692
BlnI	CCTAGG	1 cut(s)	923
BlsI	GCNGC	7 cut(s)	16, 118, 121, 295, 319, 360, 693
BmcAI	AGTACT	1 cut(s)	1126
Bme1390I	CCNGG	1 cut(s)	676
BmeT110I	CYCGRG	1 cut(s)	1160
BmiI	GGNNCC	3 cut(s)	39, 581, 983
BmrFI	CCNGG	1 cut(s)	676
BmsI	GCATC	1 cut(s)	327
BpmI	CTGGAG	2 cut(s)	546, 730
BpuEI	CTTGAG	2 cut(s)	132, 1007
BpuMI	CCSGG	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	1195
BsaJI	CCNNGG	1 cut(s)	923
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	1042, 1072
Bsc4I	CCNNNNNNNGG	3 cut(s)	541, 589, 635
Bse1I	ACTGG	4 cut(s)	747, 916, 1132, 1198
Bse3DI	GCAATG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	923
BseGI	GGATG	4 cut(s)	220, 339, 412, 865
BseLI	CCNNNNNNNGG	3 cut(s)	541, 589, 635
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	3 cut(s)	248, 1095, 1164
BseNI	ACTGG	4 cut(s)	747, 916, 1132, 1198
BseRI	GAGGAG	1 cut(s)	869
BseXI	GCAGC	3 cut(s)	103, 280, 329
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	4 cut(s)	140, 188, 361, 534
BsiHKAI	GWGCWC	1 cut(s)	997
BsiHKCI	CYCGRG	1 cut(s)	1160
BsiSI	CCGG	2 cut(s)	35, 675
BslFI	GGGAC	3 cut(s)	223, 1066, 1079
BslI	CCNNNNNNNGG	3 cut(s)	541, 589, 635
BsmAI	GTCTC	2 cut(s)	473, 1195
BsmFI	GGGAC	3 cut(s)	223, 1066, 1079
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	4 cut(s)	140, 188, 361, 534
Bso31I	GGTCTC	1 cut(s)	1195
BsoBI	CYCGRG	1 cut(s)	1160
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp143I	GATC	4 cut(s)	440, 460, 934, 981
BspACI	CCGC	7 cut(s)	119, 358, 421, 622, 691, 896, 1167
BspANI	GGCC	4 cut(s)	140, 188, 361, 534
BspCNI	CTCAG	3 cut(s)	247, 1096, 1165
BspLI	GGNNCC	3 cut(s)	39, 581, 983
BspMAI	CTGCAG	2 cut(s)	876, 1093
BspMI	ACCTGC	2 cut(s)	121, 598
BspPI	GGATC	2 cut(s)	976, 989
BspTNI	GGTCTC	1 cut(s)	1195
BsrDI	GCAATG	1 cut(s)	335
BsrI	ACTGG	4 cut(s)	747, 916, 1132, 1198
BssECI	CCNNGG	1 cut(s)	923
BssMI	GATC	4 cut(s)	440, 460, 934, 981
BssT1I	CCWWGG	1 cut(s)	923
Bst4CI	ACNGT	2 cut(s)	193, 1070
BstC8I	GCNNGC	2 cut(s)	532, 1145
BstDEI	CTNAG	5 cut(s)	60, 234, 538, 1104, 1173
BstEII	GGTNACC	1 cut(s)	595
BstF5I	GGATG	4 cut(s)	220, 339, 412, 865
BstH2I	RGCGCY	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	4 cut(s)	443, 463, 937, 984
BstMAI	GTCTC	2 cut(s)	473, 1195
BstMBI	GATC	4 cut(s)	440, 460, 934, 981
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 367, 1253
BstNSI	RCATGY	2 cut(s)	223, 956
BstPI	GGTNACC	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	674
BstSFI	CTRYAG	2 cut(s)	872, 1089
BstV1I	GCAGC	3 cut(s)	103, 280, 329
BstX2I	RGATCY	1 cut(s)	981
BstYI	RGATCY	1 cut(s)	981
BsuRI	GGCC	4 cut(s)	140, 188, 361, 534
BtsCI	GGATG	4 cut(s)	220, 339, 412, 865
BtsI	GCAGTG	2 cut(s)	9, 1098
BtsIMutI	CAGTG	5 cut(s)	9, 189, 754, 1075, 1098
BveI	ACCTGC	2 cut(s)	121, 598
Cac8I	GCNNGC	2 cut(s)	532, 1145
CaiI	CAGNNNCTG	2 cut(s)	1084, 1097
CfoI	GCGC	1 cut(s)	511
Csp6I	GTAC	3 cut(s)	909, 970, 1125
CviAII	CATG	5 cut(s)	220, 518, 710, 953, 1019
CviQI	GTAC	3 cut(s)	909, 970, 1125
DdeI	CTNAG	5 cut(s)	60, 234, 538, 1104, 1173
DpnI	GATC	4 cut(s)	442, 462, 936, 983
DpnII	GATC	4 cut(s)	440, 460, 934, 981
DrdI	GACNNNNNNGTC	1 cut(s)	1093
DseDI	GACNNNNNNGTC	1 cut(s)	1093
EaeI	YGGCCR	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	923
Eco31I	GGTCTC	1 cut(s)	1195
Eco32I	GATATC	1 cut(s)	943
Eco47III	AGCGCT	1 cut(s)	510
Eco57I	CTGAAG	1 cut(s)	1061
Eco88I	CYCGRG	1 cut(s)	1160
Eco91I	GGTNACC	1 cut(s)	595
EcoO65I	GGTNACC	1 cut(s)	595
EcoRI	GAATTC	2 cut(s)	64, 835
EcoRV	GATATC	1 cut(s)	943
EcoT14I	CCWWGG	1 cut(s)	923
ErhI	CCWWGG	1 cut(s)	923
FaeI	CATG	5 cut(s)	223, 521, 713, 956, 1022
FaqI	GGGAC	3 cut(s)	223, 1066, 1079
FatI	CATG	5 cut(s)	219, 517, 709, 952, 1018
FauI	CCCGC	1 cut(s)	1160
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	7 cut(s)	15, 117, 120, 294, 318, 359, 692
FokI	GGATG	4 cut(s)	227, 346, 419, 872
Fsp4HI	GCNGC	7 cut(s)	15, 117, 120, 294, 318, 359, 692
FspBI	CTAG	3 cut(s)	174, 777, 924
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	7 cut(s)	15, 117, 120, 294, 318, 359, 692
GsuI	CTGGAG	2 cut(s)	546, 730
HaeII	RGCGCY	1 cut(s)	512
HaeIII	GGCC	4 cut(s)	140, 188, 361, 534
HapII	CCGG	2 cut(s)	35, 675
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	5 cut(s)	223, 521, 713, 956, 1022
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	2 cut(s)	655, 958
HindII	GTYRAC	2 cut(s)	655, 958
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	4 cut(s)	50, 99, 490, 1158
HpaI	GTTAAC	1 cut(s)	958
HpaII	CCGG	2 cut(s)	35, 675
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	3 cut(s)	619, 655, 958
Hpy188I	TCNGA	3 cut(s)	49, 810, 1174
Hpy188III	TCNNGA	4 cut(s)	404, 563, 938, 1225
Hpy8I	GTNNAC	3 cut(s)	619, 655, 958
HpyAV	CCTTC	4 cut(s)	51, 539, 1056, 1182
HpyCH4III	ACNGT	2 cut(s)	193, 1070
HpyCH4IV	ACGT	1 cut(s)	1134
HpyCH4V	TGCA	7 cut(s)	130, 223, 248, 607, 717, 874, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 367, 1253
HpyF3I	CTNAG	5 cut(s)	60, 234, 538, 1104, 1173
HpySE526I	ACGT	1 cut(s)	1134
Hsp92II	CATG	5 cut(s)	223, 521, 713, 956, 1022
HspAI	GCGC	1 cut(s)	509
KspAI	GTTAAC	1 cut(s)	958
Kzo9I	GATC	4 cut(s)	440, 460, 934, 981
LmnI	GCTCC	2 cut(s)	847, 1000
Lsp1109I	GCAGC	3 cut(s)	103, 280, 329
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	3 cut(s)	174, 777, 924
MaeII	ACGT	1 cut(s)	1134
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	4 cut(s)	442, 462, 936, 983
MboI	GATC	4 cut(s)	440, 460, 934, 981
MboII	GAAGA	5 cut(s)	36, 301, 405, 691, 1020
MflI	RGATCY	1 cut(s)	981
MhlI	GDGCHC	1 cut(s)	997
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	6 cut(s)	64, 266, 372, 396, 729, 835
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	3 cut(s)	44, 93, 1152
MmeI	TCCRAC	2 cut(s)	72, 1178
Mox20I	TGGCCA	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	8 cut(s)	261, 485, 513, 522, 612, 734, 917, 957
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	2 cut(s)	35, 675
MspR9I	CCNGG	1 cut(s)	676
Mva1269I	GAATGC	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	14, 367, 1253
NciI	CCSGG	1 cut(s)	676
NdeII	GATC	4 cut(s)	440, 460, 934, 981
NlaIII	CATG	5 cut(s)	223, 521, 713, 956, 1022
NlaIV	GGNNCC	3 cut(s)	39, 581, 983
NspI	RCATGY	2 cut(s)	223, 956
PaeR7I	CTCGAG	1 cut(s)	1160
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	490
PflFI	GACNNNGTC	1 cut(s)	902
PfoI	TCCNGGA	1 cut(s)	674
PkrI	GCNGC	7 cut(s)	16, 118, 121, 295, 319, 360, 693
PleI	GAGTC	3 cut(s)	44, 93, 1152
PpsI	GAGTC	3 cut(s)	44, 93, 1152
PshBI	ATTAAT	1 cut(s)	485
Psp1406I	AACGTT	1 cut(s)	1134
PspEI	GGTNACC	1 cut(s)	595
PspN4I	GGNNCC	3 cut(s)	39, 581, 983
PspXI	VCTCGAGB	1 cut(s)	1160
PstI	CTGCAG	2 cut(s)	876, 1093
PstNI	CAGNNNCTG	2 cut(s)	1084, 1097
PsuI	RGATCY	1 cut(s)	981
PsyI	GACNNNGTC	1 cut(s)	902
RsaI	GTAC	3 cut(s)	910, 971, 1126
RsaNI	GTAC	3 cut(s)	909, 970, 1125
SaqAI	TTAA	8 cut(s)	261, 485, 513, 522, 612, 734, 917, 957
SatI	GCNGC	7 cut(s)	15, 117, 120, 294, 318, 359, 692
Sau3AI	GATC	4 cut(s)	440, 460, 934, 981
ScaI	AGTACT	1 cut(s)	1126
SchI	GAGTC	3 cut(s)	44, 93, 1152
ScrFI	CCNGG	1 cut(s)	676
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	2 cut(s)	872, 1089
Sfr274I	CTCGAG	1 cut(s)	1160
SlaI	CTCGAG	1 cut(s)	1160
SmlI	CTYRAG	3 cut(s)	147, 986, 1160
SmoI	CTYRAG	3 cut(s)	147, 986, 1160
Sse9I	AATT	6 cut(s)	64, 266, 372, 396, 729, 835
SsiI	CCGC	7 cut(s)	119, 358, 421, 622, 691, 896, 1167
SspMI	CTAG	3 cut(s)	174, 777, 924
StyD4I	CCNGG	1 cut(s)	674
StyI	CCWWGG	1 cut(s)	923
TaaI	ACNGT	2 cut(s)	193, 1070
TaiI	ACGT	1 cut(s)	1137
TaqI	TCGA	4 cut(s)	195, 463, 1156, 1161
TasI	AATT	6 cut(s)	64, 266, 372, 396, 729, 835
TatI	WGTACW	2 cut(s)	969, 1124
TauI	GCSGC	3 cut(s)	122, 361, 694
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	8 cut(s)	261, 485, 513, 522, 612, 734, 917, 957
Tru9I	TTAA	8 cut(s)	261, 485, 513, 522, 612, 734, 917, 957
TscAI	CASTG	5 cut(s)	16, 196, 754, 1075, 1098
TseI	GCWGC	4 cut(s)	14, 116, 293, 317
TspDTI	ATGAA	6 cut(s)	12, 247, 462, 503, 779, 848
TspGWI	ACGGA	3 cut(s)	240, 265, 896
TspRI	CASTG	5 cut(s)	16, 196, 754, 1075, 1098
Tth111I	GACNNNGTC	1 cut(s)	902
VspI	ATTAAT	1 cut(s)	485
XapI	RAATTY	3 cut(s)	64, 729, 835
XceI	RCATGY	2 cut(s)	223, 956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	1160
XmaJI	CCTAGG	1 cut(s)	923
XmiI	GTMKAC	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	469
XspI	CTAG	3 cut(s)	174, 777, 924
ZrmI	AGTACT	1 cut(s)	1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.