Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000665.1

Orthogroup ID

OG0005858

Physical Location & Seq

Genomic Coordinates Forward (+)

32730 .. 37549

Gene Structure 4820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000665.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

atggtcgccactgctgctacttcatcgttctttccggttccttctcccgactctggtgctaagaattccaagcttggaaatgggaatgccaagttaggactcaaatcaaaatctgctgcggctggtttgcaggtaaaggccaatgctcaagcacctccaaaaataaatggcactagtgttggtttggccactgtcgaaagtggaaagaatggggatgacatgcacggacttgctcagtctcctcctgcacggactttcattaaccaattacctgattggagtatgcttcttgctgctataaccacaatcttcttggcagcagaaaagcaatggatgatgcttgattggaaacccaagcgacctgatatgctaattgacccttttggtttgggaagaattgttcaggatggtcttgtattccgccagaacttctccattagatcgtatgaaataggtgctgatcgaacggcttcaatagagacgttaatgaatcatttacaggaaacagcacttaatcatgttaagactgctggcctcttaggggacggctttggttcaactccagagatgtccataaggaaccttatatgggtggtaaccaaaatgcaggttaaggtagaccgctatcctacttggggtgatgttgttcaagttgacacttgggttagtgcctccgggaagaatggtatgcggcgtgattggattatccatgattgcaaaacaggacaaattttaacaagagcctccagtgtgtgggtgatgatgaataaactgactaggaggttatccaaaatacccgatgaggttcggagtgaaatagagccttactttatgaattctgctcctgttgtggaggaggatggcaggaaactgcagaaacttgacgacaatactgcggactttgtccatactggtttaactcctaggtggagtgatctggatatcaaccagcatgttaacaatgtgaagtacattggctggatccttgagagtgctcccttgccaatcttggagagccatgagctttcttctatgactctggagtataggagggagtgtggaagggacagtgtgcttcagtccctgactgcagtatctggtgctgagattgggcatttagcaagtactggcaacgttgagtgccagcacttgcttcgacttgagggcgggtctgagattgagcatagggttcctgaaaacttggatttcgatgaggagagtgatggtgggttggtatcggttgttgatcggagccgtcgtccttcaccatcttcgtcctcgaagtctccgccaccccttctcccaacgatgctggtatactcggggatatggtggtgtctagggtttgtgtggtggaggtggtggcctgaggatatcgtcgtcgtttcttcgtgtagtcgaaggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000036 GO:0003674 GO:0003824 GO:0004312 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0140104 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE Acyl-thio_N

Protein Analysis

469

Amino Acids

51.99

Weight (kDa)

6.39

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08510
fragaria_vesca	FvH4_1g04250 FvH4_1g04250 FvH4_1g04250 FvH4_6g30873
malus_domestica	MD02G1042500.v1.1 MD02G1062000.v1.1 MD09G1215700.v1.1
prunus_persica	Prupe.3G074600_v2.0.a1 Prupe.3G074600_v2.0.a1 Prupe.3G074700_v2.0.a1 Prupe.7G234600_v2.0.a1 Prupe.7G234600_v2.0.a1 Prupe.7G234600_v2.0.a1
pyrus_communis	pycom02g03520 pycom15g16310
rosa_chinensis	RchiOBHm_Chr2g0089811
rosa_laevigata	RLG00000016057
rosa_multiflora	Rmu_sc0000665.1_g000007
rosa_roxburghii	Rroxscaffold_2G00151600
rosa_rugosa	Rorug02G0003400 Rorug02G0003500
rosa_samantha	Rh2AG048600 Rh2AG389900 Rh2BG047400 Rh2CG049500 Rh2CG377400
rosa_wichuraiana	Rw2G004180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	121, 598
AccB7I	CCANNNNNTGG	1 cut(s)	753
AccI	GTMKAC	2 cut(s)	618, 1317
AciI	CCGC	7 cut(s)	119, 421, 622, 691, 896, 1167, 1289
AclI	AACGTT	1 cut(s)	1134
AclWI	GGATC	2 cut(s)	976, 989
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	3 cut(s)	64, 729, 835
AcuI	CTGAAG	1 cut(s)	1061
AfaI	GTAC	2 cut(s)	971, 1126
AfiI	CCNNNNNNNGG	5 cut(s)	53, 541, 589, 635, 753
AgsI	TTSAA	3 cut(s)	474, 558, 650
AhlI	ACTAGT	1 cut(s)	173
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	2 cut(s)	73, 1024
AluI	AGCT	2 cut(s)	73, 1024
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	3 cut(s)	243, 473, 1290
AlwI	GGATC	2 cut(s)	976, 989
AlwNI	CAGNNNCTG	2 cut(s)	1084, 1097
Ama87I	CYCGRG	1 cut(s)	1321
AoxI	GGCC	4 cut(s)	138, 186, 532, 1364
ApeKI	GCWGC	4 cut(s)	14, 116, 293, 317
ApoI	RAATTY	3 cut(s)	64, 729, 835
Asp700I	GAANNNNTTC	1 cut(s)	469
AspA2I	CCTAGG	1 cut(s)	923
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	3 cut(s)	650, 769, 1257
AvaI	CYCGRG	1 cut(s)	1321
AvrII	CCTAGG	1 cut(s)	923
AxyI	CCTNAGG	1 cut(s)	1368
BaeI	ACNNNNGTAYC	2 cut(s)	1077, 1110
BalI	TGGCCA	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	981
Bbv12I	GWGCWC	1 cut(s)	997
BbvI	GCAGC	3 cut(s)	103, 280, 329
BccI	CCATC	4 cut(s)	401, 854, 1217, 1276
BceAI	ACGGC	3 cut(s)	483, 562, 1239
BcgI	CGANNNNNNTGC	6 cut(s)	38, 72, 875, 909, 1136, 1170
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	3 cut(s)	243, 473, 1290
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	4 cut(s)	174, 777, 924, 1340
BfmI	CTRYAG	2 cut(s)	872, 1089
BfuAI	ACCTGC	2 cut(s)	121, 598
BisI	GCNGC	6 cut(s)	15, 117, 120, 294, 318, 692
BlnI	CCTAGG	1 cut(s)	923
BlsI	GCNGC	6 cut(s)	16, 118, 121, 295, 319, 693
BmcAI	AGTACT	1 cut(s)	1126
Bme1390I	CCNGG	1 cut(s)	676
BmeT110I	CYCGRG	1 cut(s)	1321
BmiI	GGNNCC	5 cut(s)	39, 581, 983, 1191, 1253
BmrFI	CCNGG	1 cut(s)	676
BmsI	GCATC	2 cut(s)	327, 1299
BpmI	CTGGAG	3 cut(s)	546, 730, 1061
BpuEI	CTTGAG	3 cut(s)	132, 1007, 1181
BpuMI	CCSGG	1 cut(s)	676
BsaJI	CCNNGG	1 cut(s)	923
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	6 cut(s)	1042, 1072, 1243, 1273, 1284, 1314
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 541, 589, 635, 753
Bse1I	ACTGG	3 cut(s)	747, 916, 1132
Bse21I	CCTNAGG	1 cut(s)	1368
Bse3DI	GCAATG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	923
BseGI	GGATG	4 cut(s)	220, 339, 412, 865
BseLI	CCNNNNNNNGG	5 cut(s)	53, 541, 589, 635, 753
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	4 cut(s)	248, 1095, 1164, 1359
BseNI	ACTGG	3 cut(s)	747, 916, 1132
BseRI	GAGGAG	3 cut(s)	231, 869, 1229
BseXI	GCAGC	3 cut(s)	103, 280, 329
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	4 cut(s)	140, 188, 534, 1366
BsiHKAI	GWGCWC	1 cut(s)	997
BsiHKCI	CYCGRG	1 cut(s)	1321
BsiSI	CCGG	2 cut(s)	35, 675
BslFI	GGGAC	3 cut(s)	557, 1066, 1079
BslI	CCNNNNNNNGG	5 cut(s)	53, 541, 589, 635, 753
BsmAI	GTCTC	3 cut(s)	243, 473, 1290
BsmBI	CGTCTC	1 cut(s)	473
BsmFI	GGGAC	3 cut(s)	557, 1066, 1079
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	4 cut(s)	140, 188, 534, 1366
BsoBI	CYCGRG	1 cut(s)	1321
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp143I	GATC	5 cut(s)	440, 460, 934, 981, 1246
BspACI	CCGC	7 cut(s)	119, 421, 622, 691, 896, 1167, 1289
BspANI	GGCC	4 cut(s)	140, 188, 534, 1366
BspCNI	CTCAG	4 cut(s)	247, 1096, 1165, 1360
BspLI	GGNNCC	5 cut(s)	39, 581, 983, 1191, 1253
BspMAI	CTGCAG	2 cut(s)	876, 1093
BspMI	ACCTGC	2 cut(s)	121, 598
BspPI	GGATC	2 cut(s)	976, 989
BsrDI	GCAATG	1 cut(s)	335
BsrI	ACTGG	3 cut(s)	747, 916, 1132
BssECI	CCNNGG	1 cut(s)	923
BssMI	GATC	5 cut(s)	440, 460, 934, 981, 1246
BssNAI	GTATAC	1 cut(s)	1318
BssT1I	CCWWGG	1 cut(s)	923
Bst1107I	GTATAC	1 cut(s)	1318
Bst4CI	ACNGT	2 cut(s)	193, 1070
BstC8I	GCNNGC	2 cut(s)	532, 1145
BstDEI	CTNAG	6 cut(s)	60, 234, 538, 1104, 1173, 1368
BstEII	GGTNACC	1 cut(s)	595
BstF5I	GGATG	4 cut(s)	220, 339, 412, 865
BstKTI	GATC	5 cut(s)	443, 463, 937, 984, 1249
BstMAI	GTCTC	3 cut(s)	243, 473, 1290
BstMBI	GATC	5 cut(s)	440, 460, 934, 981, 1246
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNSI	RCATGY	2 cut(s)	223, 956
BstPI	GGTNACC	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	674
BstSFI	CTRYAG	2 cut(s)	872, 1089
BstV1I	GCAGC	3 cut(s)	103, 280, 329
BstX2I	RGATCY	1 cut(s)	981
BstYI	RGATCY	1 cut(s)	981
BstZ17I	GTATAC	1 cut(s)	1318
Bsu36I	CCTNAGG	1 cut(s)	1368
BsuRI	GGCC	4 cut(s)	140, 188, 534, 1366
BtsCI	GGATG	4 cut(s)	220, 339, 412, 865
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	4 cut(s)	9, 189, 754, 1075
BveI	ACCTGC	2 cut(s)	121, 598
Cac8I	GCNNGC	2 cut(s)	532, 1145
CaiI	CAGNNNCTG	2 cut(s)	1084, 1097
Csp6I	GTAC	2 cut(s)	970, 1125
CviAII	CATG	5 cut(s)	220, 518, 710, 953, 1019
CviQI	GTAC	2 cut(s)	970, 1125
DdeI	CTNAG	6 cut(s)	60, 234, 538, 1104, 1173, 1368
DpnI	GATC	5 cut(s)	442, 462, 936, 983, 1248
DpnII	GATC	5 cut(s)	440, 460, 934, 981, 1246
EaeI	YGGCCR	1 cut(s)	186
EciI	GGCGGA	2 cut(s)	410, 1278
Eco130I	CCWWGG	1 cut(s)	923
Eco32I	GATATC	2 cut(s)	943, 1375
Eco57I	CTGAAG	1 cut(s)	1061
Eco81I	CCTNAGG	1 cut(s)	1368
Eco88I	CYCGRG	1 cut(s)	1321
Eco91I	GGTNACC	1 cut(s)	595
EcoO65I	GGTNACC	1 cut(s)	595
EcoRI	GAATTC	2 cut(s)	64, 835
EcoRV	GATATC	2 cut(s)	943, 1375
EcoT14I	CCWWGG	1 cut(s)	923
ErhI	CCWWGG	1 cut(s)	923
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	5 cut(s)	223, 521, 713, 956, 1022
FaqI	GGGAC	3 cut(s)	557, 1066, 1079
FatI	CATG	5 cut(s)	219, 517, 709, 952, 1018
FauI	CCCGC	1 cut(s)	1160
FblI	GTMKAC	2 cut(s)	618, 1317
Fnu4HI	GCNGC	6 cut(s)	15, 117, 120, 294, 318, 692
FokI	GGATG	4 cut(s)	227, 346, 419, 872
Fsp4HI	GCNGC	6 cut(s)	15, 117, 120, 294, 318, 692
FspBI	CTAG	4 cut(s)	174, 777, 924, 1340
GluI	GCNGC	6 cut(s)	15, 117, 120, 294, 318, 692
GsuI	CTGGAG	3 cut(s)	546, 730, 1061
HaeIII	GGCC	4 cut(s)	140, 188, 534, 1366
HapII	CCGG	2 cut(s)	35, 675
Hin1II	CATG	5 cut(s)	223, 521, 713, 956, 1022
HincII	GTYRAC	2 cut(s)	655, 958
HindII	GTYRAC	2 cut(s)	655, 958
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	4 cut(s)	50, 99, 490, 1036
HpaI	GTTAAC	1 cut(s)	958
HpaII	CCGG	2 cut(s)	35, 675
HphI	GGTGA	3 cut(s)	650, 769, 1257
Hpy166II	GTNNAC	4 cut(s)	619, 655, 958, 1318
Hpy188I	TCNGA	3 cut(s)	810, 1174, 1251
Hpy188III	TCNNGA	6 cut(s)	47, 404, 563, 938, 1040, 1193
Hpy8I	GTNNAC	4 cut(s)	619, 655, 958, 1318
Hpy99I	CGWCG	3 cut(s)	1260, 1382, 1385
HpyAV	CCTTC	5 cut(s)	51, 1056, 1272, 1307, 1395
HpyCH4III	ACNGT	2 cut(s)	193, 1070
HpyCH4IV	ACGT	2 cut(s)	482, 1134
HpyCH4V	TGCA	7 cut(s)	130, 223, 248, 607, 717, 874, 1091
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	6 cut(s)	60, 234, 538, 1104, 1173, 1368
HpySE526I	ACGT	2 cut(s)	482, 1134
Hsp92II	CATG	5 cut(s)	223, 521, 713, 956, 1022
KspAI	GTTAAC	1 cut(s)	958
Kzo9I	GATC	5 cut(s)	440, 460, 934, 981, 1246
LmnI	GCTCC	3 cut(s)	847, 1000, 1251
Lsp1109I	GCAGC	3 cut(s)	103, 280, 329
LweI	GCATC	2 cut(s)	327, 1299
MaeI	CTAG	4 cut(s)	174, 777, 924, 1340
MaeII	ACGT	2 cut(s)	482, 1134
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	5 cut(s)	442, 462, 936, 983, 1248
MboI	GATC	5 cut(s)	440, 460, 934, 981, 1246
MboII	GAAGA	6 cut(s)	301, 405, 691, 1020, 1263, 1380
MflI	RGATCY	1 cut(s)	981
MhlI	GDGCHC	1 cut(s)	997
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	6 cut(s)	64, 266, 372, 396, 729, 835
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	3 cut(s)	44, 93, 1030
Mox20I	TGGCCA	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	8 cut(s)	261, 485, 513, 522, 612, 734, 917, 957
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	2 cut(s)	35, 675
MspR9I	CCNGG	1 cut(s)	676
Mva1269I	GAATGC	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	676
NdeII	GATC	5 cut(s)	440, 460, 934, 981, 1246
NlaIII	CATG	5 cut(s)	223, 521, 713, 956, 1022
NlaIV	GGNNCC	5 cut(s)	39, 581, 983, 1191, 1253
NspI	RCATGY	2 cut(s)	223, 956
PcsI	WCGNNNNNNNCGW	1 cut(s)	1255
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	490
PflFI	GACNNNGTC	1 cut(s)	902
PflMI	CCANNNNNTGG	1 cut(s)	753
PfoI	TCCNGGA	1 cut(s)	674
PkrI	GCNGC	6 cut(s)	16, 118, 121, 295, 319, 693
PleI	GAGTC	3 cut(s)	44, 93, 1030
PpsI	GAGTC	3 cut(s)	44, 93, 1030
Psp1406I	AACGTT	1 cut(s)	1134
PspEI	GGTNACC	1 cut(s)	595
PspN4I	GGNNCC	5 cut(s)	39, 581, 983, 1191, 1253
PstI	CTGCAG	2 cut(s)	876, 1093
PstNI	CAGNNNCTG	2 cut(s)	1084, 1097
PsuI	RGATCY	1 cut(s)	981
PsyI	GACNNNGTC	1 cut(s)	902
RsaI	GTAC	2 cut(s)	971, 1126
RsaNI	GTAC	2 cut(s)	970, 1125
SaqAI	TTAA	8 cut(s)	261, 485, 513, 522, 612, 734, 917, 957
SatI	GCNGC	6 cut(s)	15, 117, 120, 294, 318, 692
Sau3AI	GATC	5 cut(s)	440, 460, 934, 981, 1246
ScaI	AGTACT	1 cut(s)	1126
SchI	GAGTC	3 cut(s)	44, 93, 1030
ScrFI	CCNGG	1 cut(s)	676
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	2 cut(s)	327, 1299
SfcI	CTRYAG	2 cut(s)	872, 1089
SmlI	CTYRAG	3 cut(s)	147, 986, 1160
SmoI	CTYRAG	3 cut(s)	147, 986, 1160
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	6 cut(s)	64, 266, 372, 396, 729, 835
SsiI	CCGC	7 cut(s)	119, 421, 622, 691, 896, 1167, 1289
SspMI	CTAG	4 cut(s)	174, 777, 924, 1340
StyD4I	CCNGG	1 cut(s)	674
StyI	CCWWGG	1 cut(s)	923
TaaI	ACNGT	2 cut(s)	193, 1070
TaiI	ACGT	2 cut(s)	485, 1137
TaqI	TCGA	6 cut(s)	195, 463, 1156, 1209, 1280, 1399
TasI	AATT	6 cut(s)	64, 266, 372, 396, 729, 835
TatI	WGTACW	2 cut(s)	969, 1124
TauI	GCSGC	2 cut(s)	122, 694
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	8 cut(s)	261, 485, 513, 522, 612, 734, 917, 957
Tru9I	TTAA	8 cut(s)	261, 485, 513, 522, 612, 734, 917, 957
TscAI	CASTG	4 cut(s)	16, 196, 754, 1075
TseI	GCWGC	4 cut(s)	14, 116, 293, 317
TspDTI	ATGAA	6 cut(s)	12, 247, 462, 503, 779, 848
TspGWI	ACGGA	2 cut(s)	240, 265
TspRI	CASTG	4 cut(s)	16, 196, 754, 1075
Tth111I	GACNNNGTC	1 cut(s)	902
Van91I	CCANNNNNTGG	1 cut(s)	753
XapI	RAATTY	3 cut(s)	64, 729, 835
XceI	RCATGY	2 cut(s)	223, 956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmaJI	CCTAGG	1 cut(s)	923
XmiI	GTMKAC	2 cut(s)	618, 1317
XmnI	GAANNNNTTC	1 cut(s)	469
XspI	CTAG	4 cut(s)	174, 777, 924, 1340
ZrmI	AGTACT	1 cut(s)	1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.