Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005858

Physical Location & Seq

Genomic Coordinates Forward (+)

394050 .. 400551

Gene Structure 6502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0003400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGGAAGTGAAGAACAAGCAGGTGATATTGAAGGAGTATGTTTCGGCCGGACTCCCCAAAGAATCTGACATGGCCGTCGTCACCACCACCACCAAACTGAAGATTCCAGAAGGCTCCGGCGGGGTTCTGGTGAAGAACCTCTACTTATCCTGCGATCCTTACATGAGAAGCCGCATGACCAAGCGCGACTCTGCTTCTTATGTCGATCCCTTCAACCCCGGCGAGCCTATCATCGGTTTTGGCGTGGCTAAAGTTTTGGAATCTGGGGATGCAAAGTTTAAGCAAGGCGACTTGGTTTGGGGAATGACTGGCTGGGAAGAGTATAGTCTCATCACTTCCATTCAGTATTTGTTTAAGATTCCCACCACCGATTTGCCTCTCTCTTATTATACTGGAATTCTTGGTATGCCTGGTATGACTGCCTATGCTGGTTTTTATGAGATCTGCTCTCCTAAGAAAGGAGAGACAGTCTTCGTTTCAGCAGCATCAGGAGCGGTAGGTCAGCTTGTTGGCCAATTTGCAAAGTTAACAGGTTGTTATGTTGTTGGGAGTGCTGGAAGCAAGGAAAAGGTTGATCTGCTGAAGAACAAATTTGGATTTGATGAGGCTTTCAACTATAAAGACGAACCTGACCTAGATGCAGCTTTAAGAAGGTTCTTTCCAGATGGTATTGACATTTACTTTGAAAATGTGGGGGGAAAGATGCTTGATGCAGTGCTACCAAACATGAGGCTGAAAGGGCGAATAGCTGTGTGTGGGATGATCTCACAGTACAACCTCGAGCGGCCTGAAGGCATACATAATTTGATGTCTCTGATTGTTAAGCAGGTCCGAATGGAAGGCTTCCTGGTCTTCAGTTACTATCATCTGTACGGAAAGTTTCTTGAAACAGTGTTGCCTTACATAAAAGAAGGGAAGATAAAATATGTGGAAGATGTAGTTGAAGGCCTTGAGAATGCTCCAGCGGCTCTAATTGGGCTCTTTTCTGGCCGCAATGTGGGAAAGCAGGTGGTTGTAGTTTCCAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000036 GO:0003674 GO:0003824 GO:0004312 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0140104 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE Acyl-thio_N

Protein Analysis

344

Amino Acids

37.93

Weight (kDa)

6.77

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	7 - 113	7.5e-27	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	166 - 290	2.7e-23	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	200 - 339	1.9e-10	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08510
fragaria_vesca	FvH4_1g04250 FvH4_1g04250 FvH4_1g04250 FvH4_6g30873
malus_domestica	MD02G1042500.v1.1 MD02G1062000.v1.1 MD09G1215700.v1.1
prunus_persica	Prupe.3G074600_v2.0.a1 Prupe.3G074600_v2.0.a1 Prupe.3G074700_v2.0.a1 Prupe.7G234600_v2.0.a1 Prupe.7G234600_v2.0.a1 Prupe.7G234600_v2.0.a1
pyrus_communis	pycom02g03520 pycom15g16310
rosa_chinensis	RchiOBHm_Chr2g0089811
rosa_laevigata	RLG00000016057
rosa_multiflora	Rmu_sc0000665.1_g000007
rosa_roxburghii	Rroxscaffold_2G00151600
rosa_rugosa	Rorug02G0003400 Rorug02G0003500
rosa_samantha	Rh2AG048600 Rh2AG389900 Rh2BG047400 Rh2CG049500 Rh2CG377400
rosa_wichuraiana	Rw2G004180

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	13, 1000
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc36I	ACCTGC	3 cut(s)	13, 820, 1000
AccBSI	CCGCTC	2 cut(s)	497, 787
AccII	CGCG	1 cut(s)	189
AciI	CCGC	7 cut(s)	5, 123, 175, 497, 787, 968, 994
AclWI	GGATC	2 cut(s)	152, 203
AcoI	YGGCCR	4 cut(s)	48, 75, 514, 991
AcsI	RAATTY	2 cut(s)	399, 593
AcuI	CTGAAG	4 cut(s)	122, 605, 813, 841
AfaI	GTAC	2 cut(s)	776, 875
AfiI	CCNNNNNNNGG	3 cut(s)	236, 461, 1000
AgsI	TTSAA	6 cut(s)	34, 217, 616, 689, 890, 947
AjnI	CCWGG	2 cut(s)	412, 849
AluBI	AGCT	3 cut(s)	508, 647, 752
AluI	AGCT	3 cut(s)	508, 647, 752
Alw26I	GTCTC	3 cut(s)	335, 461, 819
AlwI	GGATC	2 cut(s)	152, 203
Ama87I	CYCGRG	1 cut(s)	782
AoxI	GGCC	6 cut(s)	48, 75, 514, 788, 949, 991
ApeKI	GCWGC	2 cut(s)	485, 644
ApoI	RAATTY	2 cut(s)	399, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	668, 700
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	832
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	37, 76, 145
AvaI	CYCGRG	1 cut(s)	782
AvaII	GGWCC	1 cut(s)	832
BalI	TGGCCA	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	984
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BbsI	GAAGAC	2 cut(s)	466, 847
BbvI	GCAGC	2 cut(s)	497, 656
BccI	CCATC	1 cut(s)	662
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	414, 851
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	3 cut(s)	335, 461, 819
BfaI	CTAG	1 cut(s)	638
BfuAI	ACCTGC	3 cut(s)	13, 820, 1000
BglII	AGATCT	1 cut(s)	444
BisI	GCNGC	6 cut(s)	175, 486, 645, 788, 969, 994
BlsI	GCNGC	6 cut(s)	176, 487, 646, 789, 970, 995
Bme1390I	CCNGG	3 cut(s)	222, 414, 851
Bme18I	GGWCC	1 cut(s)	832
BmeT110I	CYCGRG	1 cut(s)	782
BmgT120I	GGNCC	1 cut(s)	832
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	3 cut(s)	222, 414, 851
BmsI	GCATC	5 cut(s)	262, 497, 631, 696, 703
BpiI	GAAGAC	2 cut(s)	466, 847
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
BpmI	CTGGAG	1 cut(s)	948
BpuEI	CTTGAG	1 cut(s)	974
BpuMI	CCSGG	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 461, 1000
Bse1I	ACTGG	2 cut(s)	316, 400
Bse3DI	GCAATG	1 cut(s)	1003
BseBI	CCWGG	2 cut(s)	414, 851
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	277, 768
BseLI	CCNNNNNNNGG	3 cut(s)	236, 461, 1000
BseMI	GCAATG	1 cut(s)	1003
BseNI	ACTGG	2 cut(s)	316, 400
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	497, 656
BseYI	CCCAGC	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	6 cut(s)	50, 77, 516, 790, 951, 993
BsiEI	CGRYCG	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	782
BsiSI	CCGG	3 cut(s)	51, 120, 222
BslI	CCNNNNNNNGG	3 cut(s)	236, 461, 1000
BsmAI	GTCTC	3 cut(s)	335, 461, 819
BsmI	GAATGC	1 cut(s)	964
BsnI	GGCC	6 cut(s)	50, 77, 516, 790, 951, 993
BsoBI	CYCGRG	1 cut(s)	782
Bsp1286I	GDGCHC	1 cut(s)	984
Bsp143I	GATC	5 cut(s)	157, 208, 444, 577, 765
BspACI	CCGC	7 cut(s)	5, 123, 175, 497, 787, 968, 994
BspANI	GGCC	6 cut(s)	50, 77, 516, 790, 951, 993
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	3 cut(s)	13, 820, 1000
BspPI	GGATC	2 cut(s)	152, 203
BsrBI	CCGCTC	2 cut(s)	497, 787
BsrDI	GCAATG	1 cut(s)	1003
BsrI	ACTGG	2 cut(s)	316, 400
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	5 cut(s)	157, 208, 444, 577, 765
Bst2UI	CCWGG	2 cut(s)	414, 851
Bst4CI	ACNGT	3 cut(s)	472, 774, 895
Bst6I	CTCTTC	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	456
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	277, 768
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	5 cut(s)	160, 211, 447, 580, 768
BstMAI	GTCTC	3 cut(s)	335, 461, 819
BstMBI	GATC	5 cut(s)	157, 208, 444, 577, 765
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 742, 968
BstNI	CCWGG	2 cut(s)	414, 851
BstSCI	CCNGG	3 cut(s)	220, 412, 849
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	497, 656
BstV2I	GAAGAC	2 cut(s)	466, 847
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	6 cut(s)	50, 77, 516, 790, 951, 993
BtsCI	GGATG	2 cut(s)	277, 768
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	2 cut(s)	723, 900
BveI	ACCTGC	3 cut(s)	13, 820, 1000
Cac8I	GCNNGC	1 cut(s)	227
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	832
Csp6I	GTAC	2 cut(s)	775, 874
CviAII	CATG	4 cut(s)	73, 166, 178, 730
CviQI	GTAC	2 cut(s)	775, 874
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	5 cut(s)	159, 210, 446, 579, 767
DpnII	GATC	5 cut(s)	157, 208, 444, 577, 765
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	4 cut(s)	48, 75, 514, 991
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	951
Eco24I	GRGCYC	1 cut(s)	984
Eco47I	GGWCC	1 cut(s)	832
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	4 cut(s)	122, 605, 813, 841
Eco88I	CYCGRG	1 cut(s)	782
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	412, 849
EcoT38I	GRGCYC	1 cut(s)	984
FaeI	CATG	4 cut(s)	76, 169, 181, 733
FatI	CATG	4 cut(s)	72, 165, 177, 729
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	6 cut(s)	175, 486, 645, 788, 969, 994
FokI	GGATG	2 cut(s)	284, 775
FriOI	GRGCYC	1 cut(s)	984
Fsp4HI	GCNGC	6 cut(s)	175, 486, 645, 788, 969, 994
FspBI	CTAG	1 cut(s)	638
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	6 cut(s)	175, 486, 645, 788, 969, 994
GsaI	CCCAGC	1 cut(s)	319
GsuI	CTGGAG	1 cut(s)	948
HaeIII	GGCC	6 cut(s)	50, 77, 516, 790, 951, 993
HapII	CCGG	3 cut(s)	51, 120, 222
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	76, 169, 181, 733
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	6 cut(s)	54, 65, 106, 191, 263, 361
HpaI	GTTAAC	1 cut(s)	531
HpaII	CCGG	3 cut(s)	51, 120, 222
HphI	GGTGA	3 cut(s)	37, 76, 145
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	3 cut(s)	70, 819, 836
Hpy188III	TCNNGA	5 cut(s)	110, 492, 665, 887, 1026
Hpy8I	GTNNAC	1 cut(s)	531
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	8 cut(s)	28, 107, 223, 648, 788, 836, 908, 941
HpyCH4III	ACNGT	3 cut(s)	472, 774, 895
HpyCH4V	TGCA	4 cut(s)	275, 524, 644, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 742, 968
HpyF3I	CTNAG	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	76, 169, 181, 733
HspAI	GCGC	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	531
Kzo9I	GATC	5 cut(s)	157, 208, 444, 577, 765
LmnI	GCTCC	3 cut(s)	122, 494, 967
Lsp1109I	GCAGC	2 cut(s)	497, 656
LweI	GCATC	5 cut(s)	262, 497, 631, 696, 703
MaeI	CTAG	1 cut(s)	638
MaeIII	GTNAC	2 cut(s)	82, 860
MalI	GATC	5 cut(s)	159, 210, 446, 579, 767
MbiI	CCGCTC	2 cut(s)	497, 787
MboI	GATC	5 cut(s)	157, 208, 444, 577, 765
MboII	GAAGA	9 cut(s)	25, 115, 148, 332, 466, 598, 847, 931, 947
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	1 cut(s)	984
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	5 cut(s)	399, 518, 593, 805, 975
MluNI	TGGCCA	1 cut(s)	516
MlyI	GAGTC	2 cut(s)	48, 185
MnlI	CCTC	5 cut(s)	152, 390, 601, 726, 791
Mox20I	TGGCCA	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	5 cut(s)	282, 357, 530, 650, 825
Msp20I	TGGCCA	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	968
MspI	CCGG	3 cut(s)	51, 120, 222
MspR9I	CCNGG	3 cut(s)	222, 414, 851
Mva1269I	GAATGC	1 cut(s)	964
MvaI	CCWGG	2 cut(s)	414, 851
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	494, 742, 968
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	5 cut(s)	157, 208, 444, 577, 765
NlaIII	CATG	4 cut(s)	76, 169, 181, 733
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	782
PaqCI	CACCTGC	2 cut(s)	13, 1000
PceI	AGGCCT	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	964
PfeI	GAWTC	4 cut(s)	65, 106, 263, 361
PkrI	GCNGC	6 cut(s)	176, 487, 646, 789, 970, 995
PleI	GAGTC	2 cut(s)	48, 185
PpsI	GAGTC	2 cut(s)	48, 185
Psp6I	CCWGG	2 cut(s)	412, 849
PspFI	CCCAGC	1 cut(s)	315
PspGI	CCWGG	2 cut(s)	412, 849
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	832
PspXI	VCTCGAGB	1 cut(s)	782
PsuI	RGATCY	1 cut(s)	444
RsaI	GTAC	2 cut(s)	776, 875
RsaNI	GTAC	2 cut(s)	775, 874
SaqAI	TTAA	5 cut(s)	282, 357, 530, 650, 825
SatI	GCNGC	6 cut(s)	175, 486, 645, 788, 969, 994
Sau3AI	GATC	5 cut(s)	157, 208, 444, 577, 765
Sau96I	GGNCC	1 cut(s)	832
SchI	GAGTC	2 cut(s)	48, 185
ScrFI	CCNGG	3 cut(s)	222, 414, 851
SduI	GDGCHC	1 cut(s)	984
SfaNI	GCATC	5 cut(s)	262, 497, 631, 696, 703
Sfr274I	CTCGAG	1 cut(s)	782
SinI	GGWCC	1 cut(s)	832
SlaI	CTCGAG	1 cut(s)	782
SmlI	CTYRAG	2 cut(s)	782, 953
SmoI	CTYRAG	2 cut(s)	782, 953
Sse9I	AATT	5 cut(s)	399, 518, 593, 805, 975
SseBI	AGGCCT	1 cut(s)	951
SsiI	CCGC	7 cut(s)	5, 123, 175, 497, 787, 968, 994
SspMI	CTAG	1 cut(s)	638
StuI	AGGCCT	1 cut(s)	951
StyD4I	CCNGG	3 cut(s)	220, 412, 849
TaaI	ACNGT	3 cut(s)	472, 774, 895
TaqI	TCGA	2 cut(s)	207, 783
TasI	AATT	5 cut(s)	399, 518, 593, 805, 975
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	4 cut(s)	177, 790, 971, 996
TfiI	GAWTC	4 cut(s)	65, 106, 263, 361
Tru1I	TTAA	5 cut(s)	282, 357, 530, 650, 825
Tru9I	TTAA	5 cut(s)	282, 357, 530, 650, 825
TscAI	CASTG	2 cut(s)	723, 900
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	485, 644
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	2 cut(s)	723, 900
VpaK11BI	GGWCC	1 cut(s)	832
XagI	CCTNNNNNAGG	1 cut(s)	459
XapI	RAATTY	2 cut(s)	399, 593
XhoI	CTCGAG	1 cut(s)	782
XspI	CTAG	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.