Protein phosphatase 2C and cyclic nucleotide-binding kinase domain-containing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20050 AT2G20050 |
| fragaria_vesca | FvH4_1g05740 FvH4_1g05740 FvH4_1g05740 |
| malus_domestica | MD02G1058500.v1.1 MD15G1192800.v1.1 |
| prunus_persica | Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1 |
| pyrus_communis | pycom02g04740 pycom15g17250 pycom15g17260 |
| rosa_chinensis | RchiOBHm_Chr2g0091381 |
| rosa_laevigata | RLG00000016219 |
| rosa_multiflora | Rmu_ssc0000333.1_g000004 Rmu_ssc0000333.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00150130 |
| rosa_rugosa | Rorug02G0017200 Rorug02G0017300 |
| rosa_samantha | Rh2AG062300 Rh2BG061300 Rh2CG063400 Rh2DG061900 |
| rosa_wichuraiana | Rw2G005790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1101 |
| Acc36I | ACCTGC | 1 cut(s) | 2263 |
| Acc65I | GGTACC | 1 cut(s) | 262 |
| AccB1I | GGYRCC | 1 cut(s) | 262 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1033, 1272 |
| AccBSI | CCGCTC | 1 cut(s) | 35 |
| AccI | GTMKAC | 1 cut(s) | 2724 |
| AccII | CGCG | 1 cut(s) | 593 |
| AccIII | TCCGGA | 2 cut(s) | 799, 3118 |
| AciI | CCGC | 6 cut(s) | 35, 92, 591, 653, 662, 753 |
| AcsI | RAATTY | 6 cut(s) | 469, 1336, 1571, 1758, 1972, 2377 |
| AcuI | CTGAAG | 4 cut(s) | 812, 1426, 2463, 2713 |
| AcvI | CACGTG | 1 cut(s) | 1067 |
| AcyI | GRCGYC | 1 cut(s) | 713 |
| AfaI | GTAC | 9 cut(s) | 49, 264, 278, 626, 1129, 1197, 1931, 2442, 2614 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 91, 242, 272, 639, 1033, 1272, 1510 |
| AgsI | TTSAA | 7 cut(s) | 163, 785, 1334, 1738, 1795, 2392, 2403 |
| AjiI | CACGTC | 1 cut(s) | 1319 |
| AjnI | CCWGG | 8 cut(s) | 647, 877, 1391, 1507, 1590, 1692, 1823, 3062 |
| Alw26I | GTCTC | 5 cut(s) | 306, 1115, 2006, 2278, 2682 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2129, 2500 |
| Aor13HI | TCCGGA | 2 cut(s) | 799, 3118 |
| AoxI | GGCC | 6 cut(s) | 81, 1915, 2185, 2565, 2752, 2818 |
| ApeKI | GCWGC | 4 cut(s) | 547, 1079, 1111, 2528 |
| ApoI | RAATTY | 6 cut(s) | 469, 1336, 1571, 1758, 1972, 2377 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2717, 2749 |
| Asp718I | GGTACC | 1 cut(s) | 262 |
| AspLEI | GCGC | 1 cut(s) | 2150 |
| AspS9I | GGNCC | 5 cut(s) | 82, 375, 1501, 2186, 2698 |
| AsuC2I | CCSGG | 3 cut(s) | 85, 110, 383 |
| AvaII | GGWCC | 3 cut(s) | 375, 1501, 2698 |
| BanI | GGYRCC | 1 cut(s) | 262 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2424, 2456 |
| BauI | CACGAG | 1 cut(s) | 3002 |
| BbrPI | CACGTG | 1 cut(s) | 1067 |
| BbsI | GAAGAC | 4 cut(s) | 144, 1752, 2066, 3210 |
| BbvI | GCAGC | 4 cut(s) | 534, 1066, 1098, 2515 |
| BccI | CCATC | 7 cut(s) | 187, 404, 830, 995, 1157, 1378, 1880 |
| BceAI | ACGGC | 4 cut(s) | 157, 700, 1653, 2796 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1606, 1640 |
| BciT130I | CCWGG | 8 cut(s) | 649, 879, 1393, 1509, 1592, 1694, 1825, 3064 |
| BciVI | GTATCC | 2 cut(s) | 852, 885 |
| BclI | TGATCA | 7 cut(s) | 388, 706, 1429, 2014, 2026, 2212, 2515 |
| BcnI | CCSGG | 3 cut(s) | 85, 110, 383 |
| BcoDI | GTCTC | 5 cut(s) | 306, 1115, 2006, 2278, 2682 |
| BfaI | CTAG | 4 cut(s) | 204, 996, 1023, 1343 |
| BfmI | CTRYAG | 6 cut(s) | 175, 1112, 1996, 2338, 2665, 3100 |
| BfuAI | ACCTGC | 1 cut(s) | 2263 |
| BfuI | GTATCC | 2 cut(s) | 852, 885 |
| BisI | GCNGC | 4 cut(s) | 548, 1080, 1112, 2529 |
| BlpI | GCTNAGC | 1 cut(s) | 1844 |
| BlsI | GCNGC | 4 cut(s) | 549, 1081, 1113, 2530 |
| BmcAI | AGTACT | 1 cut(s) | 2442 |
| Bme18I | GGWCC | 3 cut(s) | 375, 1501, 2698 |
| BmgBI | CACGTC | 1 cut(s) | 1319 |
| BmgT120I | GGNCC | 5 cut(s) | 82, 375, 1501, 2186, 2698 |
| BmiI | GGNNCC | 6 cut(s) | 264, 376, 1286, 1365, 1614, 2253 |
| BmsI | GCATC | 7 cut(s) | 52, 175, 313, 490, 1060, 1706, 2674 |
| BpiI | GAAGAC | 4 cut(s) | 144, 1752, 2066, 3210 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3113, 3145 |
| BpmI | CTGGAG | 4 cut(s) | 291, 1359, 1676, 2781 |
| Bpu10I | CCTNAGC | 1 cut(s) | 476 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1844 |
| BpuEI | CTTGAG | 3 cut(s) | 755, 1212, 1264 |
| BpuMI | CCSGG | 3 cut(s) | 85, 110, 383 |
| Bsa29I | ATCGAT | 1 cut(s) | 3078 |
| BsaAI | YACGTR | 1 cut(s) | 1067 |
| BsaBI | GATNNNNATC | 3 cut(s) | 840, 1252, 2028 |
| BsaHI | GRCGYC | 1 cut(s) | 713 |
| BsaI | GGTCTC | 1 cut(s) | 1115 |
| BsaWI | WCCGGW | 2 cut(s) | 799, 3118 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 889, 919, 2305, 2335, 2893, 2923 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 91, 242, 272, 639, 1033, 1272, 1510 |
| Bse1I | ACTGG | 5 cut(s) | 1723, 1926, 1988, 2843, 3242 |
| Bse3DI | GCAATG | 3 cut(s) | 627, 1570, 2550 |
| Bse8I | GATNNNNATC | 3 cut(s) | 840, 1252, 2028 |
| BseAI | TCCGGA | 2 cut(s) | 799, 3118 |
| BseBI | CCWGG | 8 cut(s) | 649, 879, 1393, 1509, 1592, 1694, 1825, 3064 |
| BseCI | ATCGAT | 1 cut(s) | 3078 |
| BseJI | GATNNNNATC | 3 cut(s) | 840, 1252, 2028 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 91, 242, 272, 639, 1033, 1272, 1510 |
| BseMI | GCAATG | 3 cut(s) | 627, 1570, 2550 |
| BseNI | ACTGG | 5 cut(s) | 1723, 1926, 1988, 2843, 3242 |
| BseRI | GAGGAG | 5 cut(s) | 92, 682, 692, 910, 2329 |
| BseXI | GCAGC | 4 cut(s) | 534, 1066, 1098, 2515 |
| BseYI | CCCAGC | 2 cut(s) | 813, 2830 |
| BsgI | GTGCAG | 3 cut(s) | 268, 827, 2142 |
| Bsh1236I | CGCG | 1 cut(s) | 593 |
| Bsh1285I | CGRYCG | 1 cut(s) | 591 |
| BshFI | GGCC | 6 cut(s) | 83, 1917, 2187, 2567, 2754, 2820 |
| BshNI | GGYRCC | 1 cut(s) | 262 |
| BshVI | ATCGAT | 1 cut(s) | 3078 |
| BsiEI | CGRYCG | 1 cut(s) | 591 |
| BsiSI | CCGG | 5 cut(s) | 85, 110, 383, 800, 3119 |
| BslFI | GGGAC | 6 cut(s) | 388, 598, 832, 895, 1526, 2955 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 91, 242, 272, 639, 1033, 1272, 1510 |
| BsmAI | GTCTC | 5 cut(s) | 306, 1115, 2006, 2278, 2682 |
| BsmFI | GGGAC | 6 cut(s) | 388, 598, 832, 895, 1526, 2955 |
| BsmI | GAATGC | 1 cut(s) | 94 |
| BsnI | GGCC | 6 cut(s) | 83, 1917, 2187, 2567, 2754, 2820 |
| Bso31I | GGTCTC | 1 cut(s) | 1115 |
| Bsp13I | TCCGGA | 2 cut(s) | 799, 3118 |
| Bsp1407I | TGTACA | 3 cut(s) | 624, 1929, 2612 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1844 |
| Bsp19I | CCATGG | 1 cut(s) | 2821 |
| BspACI | CCGC | 6 cut(s) | 35, 92, 591, 653, 662, 753 |
| BspANI | GGCC | 6 cut(s) | 83, 1917, 2187, 2567, 2754, 2820 |
| BspDI | ATCGAT | 1 cut(s) | 3078 |
| BspEI | TCCGGA | 2 cut(s) | 799, 3118 |
| BspFNI | CGCG | 1 cut(s) | 593 |
| BspLI | GGNNCC | 6 cut(s) | 264, 376, 1286, 1365, 1614, 2253 |
| BspMAI | CTGCAG | 3 cut(s) | 1116, 2000, 2342 |
| BspMI | ACCTGC | 1 cut(s) | 2263 |
| BspT107I | GGYRCC | 1 cut(s) | 262 |
| BspTNI | GGTCTC | 1 cut(s) | 1115 |
| BsrBI | CCGCTC | 1 cut(s) | 35 |
| BsrDI | GCAATG | 3 cut(s) | 627, 1570, 2550 |
| BsrGI | TGTACA | 3 cut(s) | 624, 1929, 2612 |
| BsrI | ACTGG | 5 cut(s) | 1723, 1926, 1988, 2843, 3242 |
| BssNI | GRCGYC | 1 cut(s) | 713 |
| BssSI | CACGAG | 1 cut(s) | 3002 |
| BssT1I | CCWWGG | 3 cut(s) | 2821, 3034, 3181 |
| Bst2BI | CACGAG | 1 cut(s) | 3002 |
| Bst2UI | CCWGG | 8 cut(s) | 649, 879, 1393, 1509, 1592, 1694, 1825, 3064 |
| Bst4CI | ACNGT | 9 cut(s) | 228, 256, 350, 444, 601, 1033, 1144, 1215, 3101 |
| Bst6I | CTCTTC | 2 cut(s) | 446, 1445 |
| BstACI | GRCGYC | 1 cut(s) | 713 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1088 |
| BstAUI | TGTACA | 3 cut(s) | 624, 1929, 2612 |
| BstBAI | YACGTR | 1 cut(s) | 1067 |
| BstC8I | GCNNGC | 4 cut(s) | 993, 1419, 1487, 2298 |
| BstDSI | CCRYGG | 3 cut(s) | 1032, 1753, 2821 |
| BstEII | GGTNACC | 1 cut(s) | 1215 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 270 |
| BstFNI | CGCG | 1 cut(s) | 593 |
| BstHHI | GCGC | 1 cut(s) | 2150 |
| BstMAI | GTCTC | 5 cut(s) | 306, 1115, 2006, 2278, 2682 |
| BstMCI | CGRYCG | 1 cut(s) | 591 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 89, 509, 530, 659, 1079, 1088, 2079 |
| BstNI | CCWGG | 8 cut(s) | 649, 879, 1393, 1509, 1592, 1694, 1825, 3064 |
| BstNSI | RCATGY | 4 cut(s) | 1160, 1489, 2528, 2550 |
| BstPI | GGTNACC | 1 cut(s) | 1215 |
| BstSFI | CTRYAG | 6 cut(s) | 175, 1112, 1996, 2338, 2665, 3100 |
| BstUI | CGCG | 1 cut(s) | 593 |
| BstV1I | GCAGC | 4 cut(s) | 534, 1066, 1098, 2515 |
| BstV2I | GAAGAC | 4 cut(s) | 144, 1752, 2066, 3210 |
| BstX2I | RGATCY | 7 cut(s) | 105, 694, 1060, 1813, 2368, 2455, 2641 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2838 |
| BstYI | RGATCY | 7 cut(s) | 105, 694, 1060, 1813, 2368, 2455, 2641 |
| Bsu15I | ATCGAT | 1 cut(s) | 3078 |
| BsuI | GTATCC | 2 cut(s) | 852, 885 |
| BsuRI | GGCC | 6 cut(s) | 83, 1917, 2187, 2567, 2754, 2820 |
| BsuTUI | ATCGAT | 1 cut(s) | 3078 |
| BtgI | CCRYGG | 3 cut(s) | 1032, 1753, 2821 |
| BtrI | CACGTC | 1 cut(s) | 1319 |
| BtsI | GCAGTG | 2 cut(s) | 815, 2347 |
| BtsIMutI | CAGTG | 5 cut(s) | 815, 1149, 1469, 1815, 2347 |
| BveI | ACCTGC | 1 cut(s) | 2263 |
| Cac8I | GCNNGC | 4 cut(s) | 993, 1419, 1487, 2298 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2129, 2500 |
| CfoI | GCGC | 1 cut(s) | 2150 |
| Cfr13I | GGNCC | 5 cut(s) | 82, 375, 1501, 2186, 2698 |
| ClaI | ATCGAT | 1 cut(s) | 3078 |
| CseI | GACGC | 2 cut(s) | 721, 1976 |
| Csp6I | GTAC | 9 cut(s) | 48, 263, 277, 625, 1128, 1196, 1930, 2441, 2613 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2494, 2529 |
| CviQI | GTAC | 9 cut(s) | 48, 263, 277, 625, 1128, 1196, 1930, 2441, 2613 |
| DraI | TTTAAA | 1 cut(s) | 2364 |
| Eam1104I | CTCTTC | 2 cut(s) | 446, 1445 |
| EarI | CTCTTC | 2 cut(s) | 446, 1445 |
| Eco130I | CCWWGG | 3 cut(s) | 2821, 3034, 3181 |
| Eco147I | AGGCCT | 1 cut(s) | 1917 |
| Eco31I | GGTCTC | 1 cut(s) | 1115 |
| Eco47I | GGWCC | 3 cut(s) | 375, 1501, 2698 |
| Eco57I | CTGAAG | 4 cut(s) | 812, 1426, 2463, 2713 |
| Eco72I | CACGTG | 1 cut(s) | 1067 |
| Eco91I | GGTNACC | 1 cut(s) | 1215 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 270 |
| EcoO65I | GGTNACC | 1 cut(s) | 1215 |
| EcoRI | GAATTC | 1 cut(s) | 1758 |
| EcoRII | CCWGG | 8 cut(s) | 647, 877, 1391, 1507, 1590, 1692, 1823, 3062 |
| EcoT14I | CCWWGG | 3 cut(s) | 2821, 3034, 3181 |
| EcoT22I | ATGCAT | 1 cut(s) | 2552 |
| ErhI | CCWWGG | 3 cut(s) | 2821, 3034, 3181 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2280, 2312, 3195, 3227 |
| FaqI | GGGAC | 6 cut(s) | 388, 598, 832, 895, 1526, 2955 |
| FauI | CCCGC | 1 cut(s) | 85 |
| FbaI | TGATCA | 7 cut(s) | 388, 706, 1429, 2014, 2026, 2212, 2515 |
| FblI | GTMKAC | 1 cut(s) | 2724 |
| Fnu4HI | GCNGC | 4 cut(s) | 548, 1080, 1112, 2529 |
| Fsp4HI | GCNGC | 4 cut(s) | 548, 1080, 1112, 2529 |
| FspBI | CTAG | 4 cut(s) | 204, 996, 1023, 1343 |
| GlaI | GCGC | 1 cut(s) | 2149 |
| GluI | GCNGC | 4 cut(s) | 548, 1080, 1112, 2529 |
| GsaI | CCCAGC | 2 cut(s) | 817, 2834 |
| GsuI | CTGGAG | 4 cut(s) | 291, 1359, 1676, 2781 |
| HaeIII | GGCC | 6 cut(s) | 83, 1917, 2187, 2567, 2754, 2820 |
| HapII | CCGG | 5 cut(s) | 85, 110, 383, 800, 3119 |
| HgaI | GACGC | 2 cut(s) | 721, 1976 |
| HhaI | GCGC | 1 cut(s) | 2150 |
| Hin1I | GRCGYC | 1 cut(s) | 713 |
| Hin6I | GCGC | 1 cut(s) | 2148 |
| HinP1I | GCGC | 1 cut(s) | 2148 |
| HincII | GTYRAC | 2 cut(s) | 1263, 1830 |
| HindII | GTYRAC | 2 cut(s) | 1263, 1830 |
| HindIII | AAGCTT | 2 cut(s) | 746, 2198 |
| HpaII | CCGG | 5 cut(s) | 85, 110, 383, 800, 3119 |
| Hpy166II | GTNNAC | 6 cut(s) | 440, 1263, 1830, 2102, 2505, 2725 |
| Hpy8I | GTNNAC | 6 cut(s) | 440, 1263, 1830, 2102, 2505, 2725 |
| Hpy99I | CGWCG | 1 cut(s) | 538 |
| HpyCH4III | ACNGT | 9 cut(s) | 228, 256, 350, 444, 601, 1033, 1144, 1215, 3101 |
| HpyCH4IV | ACGT | 3 cut(s) | 1066, 1318, 2658 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 89, 509, 530, 659, 1079, 1088, 2079 |
| HpySE526I | ACGT | 3 cut(s) | 1066, 1318, 2658 |
| Hsp92I | GRCGYC | 1 cut(s) | 713 |
| HspAI | GCGC | 1 cut(s) | 2148 |
| Kpn2I | TCCGGA | 2 cut(s) | 799, 3118 |
| KpnI | GGTACC | 1 cut(s) | 266 |
| Ksp22I | TGATCA | 7 cut(s) | 388, 706, 1429, 2014, 2026, 2212, 2515 |
| LmnI | GCTCC | 5 cut(s) | 32, 428, 679, 961, 2800 |
| Lsp1109I | GCAGC | 4 cut(s) | 534, 1066, 1098, 2515 |
| LweI | GCATC | 7 cut(s) | 52, 175, 313, 490, 1060, 1706, 2674 |
| MaeI | CTAG | 4 cut(s) | 204, 996, 1023, 1343 |
| MaeII | ACGT | 3 cut(s) | 1066, 1318, 2658 |
| MaeIII | GTNAC | 7 cut(s) | 170, 515, 1215, 1541, 1711, 2997, 3155 |
| MbiI | CCGCTC | 1 cut(s) | 35 |
| MfeI | CAATTG | 2 cut(s) | 1083, 1896 |
| MflI | RGATCY | 7 cut(s) | 105, 694, 1060, 1813, 2368, 2455, 2641 |
| MlyI | GAGTC | 3 cut(s) | 929, 1451, 2862 |
| MmeI | TCCRAC | 2 cut(s) | 1458, 2676 |
| Mph1103I | ATGCAT | 1 cut(s) | 2552 |
| MroI | TCCGGA | 2 cut(s) | 799, 3118 |
| MslI | CAYNNNNRTG | 5 cut(s) | 555, 1161, 2034, 2652, 3162 |
| MspA1I | CMGCKG | 2 cut(s) | 547, 2834 |
| MspI | CCGG | 5 cut(s) | 85, 110, 383, 800, 3119 |
| MunI | CAATTG | 2 cut(s) | 1083, 1896 |
| Mva1269I | GAATGC | 1 cut(s) | 94 |
| MvaI | CCWGG | 8 cut(s) | 649, 879, 1393, 1509, 1592, 1694, 1825, 3064 |
| MvnI | CGCG | 1 cut(s) | 593 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 89, 509, 530, 659, 1079, 1088, 2079 |
| NciI | CCSGG | 3 cut(s) | 85, 110, 383 |
| NcoI | CCATGG | 1 cut(s) | 2821 |
| NlaIV | GGNNCC | 6 cut(s) | 264, 376, 1286, 1365, 1614, 2253 |
| NmeAIII | GCCGAG | 1 cut(s) | 500 |
| NmuCI | GTSAC | 5 cut(s) | 515, 1215, 1541, 1711, 3155 |
| NsiI | ATGCAT | 1 cut(s) | 2552 |
| NspI | RCATGY | 4 cut(s) | 1160, 1489, 2528, 2550 |
| PaeI | GCATGC | 1 cut(s) | 1489 |
| PceI | AGGCCT | 1 cut(s) | 1917 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 405, 3204 |
| PctI | GAATGC | 1 cut(s) | 94 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1033, 1272 |
| PfoI | TCCNGGA | 1 cut(s) | 1590 |
| PkrI | GCNGC | 4 cut(s) | 549, 1081, 1113, 2530 |
| PleI | GAGTC | 3 cut(s) | 928, 1451, 2861 |
| PmaCI | CACGTG | 1 cut(s) | 1067 |
| PmlI | CACGTG | 1 cut(s) | 1067 |
| PpsI | GAGTC | 3 cut(s) | 928, 1451, 2861 |
| Ppu21I | YACGTR | 1 cut(s) | 1067 |
| PsiI | TTATAA | 1 cut(s) | 1101 |
| Psp6I | CCWGG | 8 cut(s) | 647, 877, 1391, 1507, 1590, 1692, 1823, 3062 |
| PspCI | CACGTG | 1 cut(s) | 1067 |
| PspEI | GGTNACC | 1 cut(s) | 1215 |
| PspFI | CCCAGC | 2 cut(s) | 813, 2830 |
| PspGI | CCWGG | 8 cut(s) | 647, 877, 1391, 1507, 1590, 1692, 1823, 3062 |
| PspN4I | GGNNCC | 6 cut(s) | 264, 376, 1286, 1365, 1614, 2253 |
| PspPI | GGNCC | 5 cut(s) | 82, 375, 1501, 2186, 2698 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 37, 69 |
| PstI | CTGCAG | 3 cut(s) | 1116, 2000, 2342 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2129, 2500 |
| PsuI | RGATCY | 7 cut(s) | 105, 694, 1060, 1813, 2368, 2455, 2641 |
| PvuII | CAGCTG | 2 cut(s) | 547, 2834 |
| RsaI | GTAC | 9 cut(s) | 49, 264, 278, 626, 1129, 1197, 1931, 2442, 2614 |
| RsaNI | GTAC | 9 cut(s) | 48, 263, 277, 625, 1128, 1196, 1930, 2441, 2613 |
| RseI | CAYNNNNRTG | 5 cut(s) | 555, 1161, 2034, 2652, 3162 |
| SatI | GCNGC | 4 cut(s) | 548, 1080, 1112, 2529 |
| Sau96I | GGNCC | 5 cut(s) | 82, 375, 1501, 2186, 2698 |
| ScaI | AGTACT | 1 cut(s) | 2442 |
| SchI | GAGTC | 3 cut(s) | 929, 1451, 2862 |
| SfaNI | GCATC | 7 cut(s) | 52, 175, 313, 490, 1060, 1706, 2674 |
| SfcI | CTRYAG | 6 cut(s) | 175, 1112, 1996, 2338, 2665, 3100 |
| SinI | GGWCC | 3 cut(s) | 375, 1501, 2698 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 555, 1161, 2034, 2652, 3162 |
| SmlI | CTYRAG | 3 cut(s) | 734, 1227, 1279 |
| SmoI | CTYRAG | 3 cut(s) | 734, 1227, 1279 |
| SphI | GCATGC | 1 cut(s) | 1489 |
| SseBI | AGGCCT | 1 cut(s) | 1917 |
| SsiI | CCGC | 6 cut(s) | 35, 92, 591, 653, 662, 753 |
| SspMI | CTAG | 4 cut(s) | 204, 996, 1023, 1343 |
| StuI | AGGCCT | 1 cut(s) | 1917 |
| StyI | CCWWGG | 3 cut(s) | 2821, 3034, 3181 |
| TaaI | ACNGT | 9 cut(s) | 228, 256, 350, 444, 601, 1033, 1144, 1215, 3101 |
| TaiI | ACGT | 3 cut(s) | 1069, 1321, 2661 |
| TaqI | TCGA | 9 cut(s) | 17, 56, 212, 408, 701, 911, 1804, 3009, 3078 |
| TatI | WGTACW | 5 cut(s) | 47, 624, 1929, 2440, 2612 |
| TscAI | CASTG | 5 cut(s) | 815, 1149, 1469, 1815, 2347 |
| TseFI | GTSAC | 5 cut(s) | 515, 1215, 1541, 1711, 3155 |
| TseI | GCWGC | 4 cut(s) | 547, 1079, 1111, 2528 |
| Tsp45I | GTSAC | 5 cut(s) | 515, 1215, 1541, 1711, 3155 |
| TspDTI | ATGAA | 7 cut(s) | 1641, 1866, 1926, 2607, 2857, 3027, 3216 |
| TspGWI | ACGGA | 6 cut(s) | 357, 1248, 1365, 1690, 1742, 2264 |
| TspRI | CASTG | 5 cut(s) | 815, 1149, 1469, 1815, 2347 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1033, 1272 |
| VpaK11BI | GGWCC | 3 cut(s) | 375, 1501, 2698 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 270 |
| XapI | RAATTY | 6 cut(s) | 469, 1336, 1571, 1758, 1972, 2377 |
| XbaI | TCTAGA | 1 cut(s) | 1342 |
| XceI | RCATGY | 4 cut(s) | 1160, 1489, 2528, 2550 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 852, 2838, 3001 |
| XmiI | GTMKAC | 1 cut(s) | 2724 |
| XspI | CTAG | 4 cut(s) | 204, 996, 1023, 1343 |
| ZrmI | AGTACT | 1 cut(s) | 2442 |
| Zsp2I | ATGCAT | 1 cut(s) | 2552 |