Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006775

Physical Location & Seq

Genomic Coordinates Reverse (-)

1438034 .. 1439763

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0017200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCCTCATGGGTAGTTAGGTTCATGGGTGGTGGTGACCGTGGTGCGGGTCATGTGGCTTGTGTGGATCATGAGGAGGGCCGCCGGGAGGAGGGGCATGGGGTCCCGGAGGGGGTGGATGGGGTCCCGGAGGAGGGGGTGCATGAGGCCCCGGAGGAGGAGGCTCGTGGTGCCCCGGACCTGGAGGTGGCGGGTGACCGTGGCCGTGTGGTGGTGGTGGATGGTCTGGCATTTTACAATATCACAAATGATTCTGATAAGTTTAGATTTTGCTGCGATCAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04022 ko04540 ko04611 ko04713 ko04714 ko04730 ko04740 ko04923 ko04924 ko04970 map04022 map04540 map04611 map04713 map04714 map04730 map04740 map04923 map04924 map04970

Pfam Domains

Protein Families

PP2C Pkinase cNMP_binding

Protein Analysis

95

Amino Acids

10.23

Weight (kDa)

4.5

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20050 AT2G20050
fragaria_vesca	FvH4_1g05740 FvH4_1g05740 FvH4_1g05740
malus_domestica	MD02G1058500.v1.1 MD15G1192800.v1.1
prunus_persica	Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1
pyrus_communis	pycom02g04740 pycom15g17250 pycom15g17260
rosa_chinensis	RchiOBHm_Chr2g0091381
rosa_laevigata	RLG00000016219
rosa_multiflora	Rmu_ssc0000333.1_g000004 Rmu_ssc0000333.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150130
rosa_rugosa	Rorug02G0017200 Rorug02G0017300
rosa_samantha	Rh2AG062300 Rh2BG061300 Rh2CG063400 Rh2DG061900
rosa_wichuraiana	Rw2G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AciI	CCGC	3 cut(s)	47, 82, 191
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	180
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	4 cut(s)	3, 79, 147, 202
ApeKI	GCWGC	1 cut(s)	273
AspS9I	GGNCC	5 cut(s)	79, 103, 124, 148, 178
AsuC2I	CCSGG	5 cut(s)	86, 107, 128, 152, 176
AsuHPI	GGTGA	2 cut(s)	47, 206
AvaII	GGWCC	3 cut(s)	103, 124, 178
BaeGI	GKGCMC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	2 cut(s)	113, 215
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	5 cut(s)	86, 107, 128, 152, 176
BisI	GCNGC	2 cut(s)	82, 274
BlsI	GCNGC	2 cut(s)	83, 275
Bme1390I	CCNGG	6 cut(s)	86, 107, 128, 152, 176, 182
Bme18I	GGWCC	3 cut(s)	103, 124, 178
BmgT120I	GGNCC	5 cut(s)	79, 103, 124, 148, 178
BmiI	GGNNCC	6 cut(s)	104, 105, 125, 126, 150, 172
BmrFI	CCNGG	6 cut(s)	86, 107, 128, 152, 176, 182
BpmI	CTGGAG	1 cut(s)	203
BpuMI	CCSGG	5 cut(s)	86, 107, 128, 152, 176
BsaJI	CCNNGG	4 cut(s)	40, 150, 174, 199
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	4 cut(s)	40, 150, 174, 199
BseGI	GGATG	2 cut(s)	124, 226
BseRI	GAGGAG	5 cut(s)	89, 104, 146, 170, 173
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	260
BshFI	GGCC	4 cut(s)	5, 81, 149, 204
BshNI	GGYRCC	1 cut(s)	170
BsiSI	CCGG	5 cut(s)	85, 107, 128, 152, 176
BslFI	GGGAC	2 cut(s)	89, 110
BsmFI	GGGAC	2 cut(s)	89, 110
BsnI	GGCC	4 cut(s)	5, 81, 149, 204
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	67, 277
BspACI	CCGC	3 cut(s)	47, 82, 191
BspANI	GGCC	4 cut(s)	5, 81, 149, 204
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	6 cut(s)	104, 105, 125, 126, 150, 172
BspPI	GGATC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	170
BssECI	CCNNGG	4 cut(s)	40, 150, 174, 199
BssMI	GATC	2 cut(s)	67, 277
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	41, 200
BstDSI	CCRYGG	2 cut(s)	40, 199
BstEII	GGTNACC	2 cut(s)	35, 194
BstF5I	GGATG	2 cut(s)	124, 226
BstKTI	GATC	2 cut(s)	70, 280
BstMBI	GATC	2 cut(s)	67, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	182
BstPI	GGTNACC	2 cut(s)	35, 194
BstSCI	CCNGG	6 cut(s)	84, 105, 126, 150, 174, 180
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	260
BsuRI	GGCC	4 cut(s)	5, 81, 149, 204
BtgI	CCRYGG	2 cut(s)	40, 199
BtsCI	GGATG	2 cut(s)	124, 226
CciI	TCATGA	1 cut(s)	70
Cfr13I	GGNCC	5 cut(s)	79, 103, 124, 148, 178
CviAII	CATG	6 cut(s)	9, 25, 53, 71, 98, 143
CviJI	RGCY	6 cut(s)	5, 59, 81, 149, 164, 204
CviKI_1	RGCY	6 cut(s)	5, 59, 81, 149, 164, 204
DpnI	GATC	2 cut(s)	69, 279
DpnII	GATC	2 cut(s)	67, 277
EaeI	YGGCCR	1 cut(s)	202
Eco47I	GGWCC	3 cut(s)	103, 124, 178
Eco91I	GGTNACC	2 cut(s)	35, 194
EcoO109I	RGGNCCY	3 cut(s)	103, 124, 148
EcoO65I	GGTNACC	2 cut(s)	35, 194
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	6 cut(s)	12, 28, 56, 74, 101, 146
FaiI	YATR	6 cut(s)	10, 26, 54, 72, 99, 144
FaqI	GGGAC	2 cut(s)	89, 110
FatI	CATG	6 cut(s)	8, 24, 52, 70, 97, 142
FauI	CCCGC	2 cut(s)	40, 184
Fnu4HI	GCNGC	2 cut(s)	82, 274
FokI	GGATG	2 cut(s)	131, 233
Fsp4HI	GCNGC	2 cut(s)	82, 274
GluI	GCNGC	2 cut(s)	82, 274
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	5, 81, 149, 204
HapII	CCGG	5 cut(s)	85, 107, 128, 152, 176
Hin1II	CATG	6 cut(s)	12, 28, 56, 74, 101, 146
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	5 cut(s)	85, 107, 128, 152, 176
HphI	GGTGA	2 cut(s)	47, 206
Hpy188I	TCNGA	2 cut(s)	256, 287
Hpy188III	TCNNGA	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	41, 200
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
Hsp92II	CATG	6 cut(s)	12, 28, 56, 74, 101, 146
KflI	GGGWCCC	2 cut(s)	103, 124
Kzo9I	GATC	2 cut(s)	67, 277
LpnPI	CCDG	8 cut(s)	98, 120, 141, 165, 167, 189, 194, 212
Lsp1109I	GCAGC	1 cut(s)	260
MaeIII	GTNAC	2 cut(s)	35, 194
MalI	GATC	2 cut(s)	69, 279
MboI	GATC	2 cut(s)	67, 277
MhlI	GDGCHC	1 cut(s)	175
MspI	CCGG	5 cut(s)	85, 107, 128, 152, 176
MspR9I	CCNGG	6 cut(s)	86, 107, 128, 152, 176, 182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	5 cut(s)	86, 107, 128, 152, 176
NdeII	GATC	2 cut(s)	67, 277
NlaIII	CATG	6 cut(s)	12, 28, 56, 74, 101, 146
NlaIV	GGNNCC	6 cut(s)	104, 105, 125, 126, 150, 172
NmuCI	GTSAC	2 cut(s)	35, 194
PagI	TCATGA	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	251
PfoI	TCCNGGA	2 cut(s)	105, 126
PkrI	GCNGC	2 cut(s)	83, 275
PpuMI	RGGWCCY	2 cut(s)	103, 124
Psp5II	RGGWCCY	2 cut(s)	103, 124
Psp6I	CCWGG	1 cut(s)	180
PspEI	GGTNACC	2 cut(s)	35, 194
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	6 cut(s)	104, 105, 125, 126, 150, 172
PspPI	GGNCC	5 cut(s)	79, 103, 124, 148, 178
PspPPI	RGGWCCY	2 cut(s)	103, 124
SatI	GCNGC	2 cut(s)	82, 274
Sau3AI	GATC	2 cut(s)	67, 277
Sau96I	GGNCC	5 cut(s)	79, 103, 124, 148, 178
ScrFI	CCNGG	6 cut(s)	86, 107, 128, 152, 176, 182
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	3 cut(s)	23, 183, 189
SinI	GGWCC	3 cut(s)	103, 124, 178
SsiI	CCGC	3 cut(s)	47, 82, 191
StyD4I	CCNGG	6 cut(s)	84, 105, 126, 150, 174, 180
TaaI	ACNGT	2 cut(s)	41, 200
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	251
TseFI	GTSAC	2 cut(s)	35, 194
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	2 cut(s)	35, 194
TspDTI	ATGAA	1 cut(s)	13
VpaK11BI	GGWCC	3 cut(s)	103, 124, 178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.