Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006775

Physical Location & Seq

Genomic Coordinates Forward (+)

12169496 .. 12172135

Gene Structure 2640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17260.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGATCGATCCTCAGAGCAGTAAAGAGCTCTCAGTGGAGAAGACGGAGGGAAGCTGCTTTGGTGAATGGGCACTTCTTGGAGAACATATTGATTTGTTTACTGCAGTTGCTGTGGGAGATGTCACCTGTGCTGTTTTAACAAAGGAGAATTTTGATTCAGTCATTGGCCCTTTGACAAAGCTTTCTCAGGATGATCGGAAGTCAAGGGATTATTCTTCTGACGTTCCAAAGGGATCTGCCAAGAACGTTGATATTTCTGCTCTTACTAAAGTCCAGTTGTCTGATCTGGATTGGAGAACAATTTTATATAGCACTGACTGCAGTGAGATTGGACTTGTATGTTTAAGAGATTCAGAAAAATTGCTTAGTTTGAAAAGGTTTTCAAAGCAAAAGGTCAGAAGGATGGGAAAGGAAGCACAAGTGTTAAGAGAGAAGGATCTAATCAAGAGTATGAGTTCTTCAGCGTGTGTGCCACAGTTTCTGTGCACATGTGTTGATCAGACACATGCTGGCATACTGTATAATACTTGCCTTGCTTGTCCGTTGGCTTCGATACTTCACACTCCCCTTGATGAACCATCTGCCAAATTTTGTGCAGCCTCTCTAGTTGCTGGTTTGGCAGATCTCCATAAGAATGACGTTCTCTACAGAGGCTTGTCTCCTGATGTTTTAATGTTGGACCAAACAGGATATTTGCAGCTAGTAGACTTCAGGTTTGGCAAGAAGTTATCTGGTGAAAGGACATATACAATTTGTGGAATGGTGGACTTTTTAGCTCCAGAGGTAGTCCAGGGAAAAGGCCATGGTTTCCCAGCTGACTGGTGGGCATTAGGAGTGTTGATATACTTCATGCTACAGGGTGAAATGCCATTCGGCTCATGGAGACAAAGTGAGCTTGATACATTTGCAAAGATCGCAAAGGGACAGCTAACTCTACCGCAAACTTTTAGTCCTGAAGTTGTTGATCTCATCACTAAGTTACTCGAGGTTGATGAAAACACCAGACTAGGAAGCCAAGGTTATGAATCTGTCAAAAGGCATCCCTGGTTTGATGGTATTGATTGGGAAGGGATCAAAGACAGTAGTTTGCCTGTTCCTCATGAGATCACATCTCGTATAACTCAACATTTGGGAAGTCACTCCGAGGACTGTTCTGTTCCTCTAGCTTCTCCATCTCGAAATGGAGAAGAACTCGATACCCCTGAATGGTTTGACGACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04022 ko04540 ko04611 ko04713 ko04714 ko04730 ko04740 ko04923 ko04924 ko04970 map04022 map04540 map04611 map04713 map04714 map04730 map04740 map04923 map04924 map04970

Pfam Domains

Protein Families

PP2C Pkinase cNMP_binding

Protein Analysis

408

Amino Acids

45.18

Weight (kDa)

5.0

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20050 AT2G20050
fragaria_vesca	FvH4_1g05740 FvH4_1g05740 FvH4_1g05740
malus_domestica	MD02G1058500.v1.1 MD15G1192800.v1.1
prunus_persica	Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1
pyrus_communis	pycom02g04740 pycom15g17250 pycom15g17260
rosa_chinensis	RchiOBHm_Chr2g0091381
rosa_laevigata	RLG00000016219
rosa_multiflora	Rmu_ssc0000333.1_g000004 Rmu_ssc0000333.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150130
rosa_rugosa	Rorug02G0017200 Rorug02G0017300
rosa_samantha	Rh2AG062300 Rh2BG061300 Rh2CG063400 Rh2DG061900
rosa_wichuraiana	Rw2G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	705
AciI	CCGC	1 cut(s)	938
AclI	AACGTT	1 cut(s)	246
AclWI	GGATC	4 cut(s)	2, 241, 444, 1079
AcsI	RAATTY	2 cut(s)	148, 587
AcuI	CTGAAG	3 cut(s)	444, 694, 975
AfiI	CCNNNNNNNGG	1 cut(s)	1206
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	2 cut(s)	373, 384
AjnI	CCWGG	2 cut(s)	789, 1043
AluBI	AGCT	9 cut(s)	28, 54, 181, 700, 776, 815, 895, 928, 1166
AluI	AGCT	9 cut(s)	28, 54, 181, 700, 776, 815, 895, 928, 1166
Alw21I	GWGCWC	2 cut(s)	30, 488
Alw26I	GTCTC	2 cut(s)	663, 877
Alw44I	GTGCAC	1 cut(s)	484
AlwI	GGATC	4 cut(s)	2, 241, 444, 1079
AlwNI	CAGNNNCTG	2 cut(s)	110, 481
Ama87I	CYCGRG	1 cut(s)	983
AoxI	GGCC	2 cut(s)	166, 799
ApaLI	GTGCAC	1 cut(s)	484
ApeKI	GCWGC	3 cut(s)	54, 596, 697
ApoI	RAATTY	2 cut(s)	148, 587
ArsI	GACNNNNNNTTYG	4 cut(s)	698, 730, 934, 966
AspS9I	GGNCC	2 cut(s)	167, 679
AsuHPI	GGTGA	4 cut(s)	74, 115, 746, 872
AvaI	CYCGRG	1 cut(s)	983
AvaII	GGWCC	1 cut(s)	679
BaeGI	GKGCMC	2 cut(s)	73, 488
BanII	GRGCYC	1 cut(s)	30
BarI	GAAGNNNNNNTAC	2 cut(s)	442, 474
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	2 cut(s)	30, 488
BbvI	GCAGC	3 cut(s)	41, 608, 709
BccI	CCATC	4 cut(s)	397, 586, 1046, 1180
BciT130I	CCWGG	2 cut(s)	791, 1045
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	2 cut(s)	663, 877
BfaI	CTAG	4 cut(s)	605, 701, 1007, 1163
BfmI	CTRYAG	4 cut(s)	102, 319, 646, 854
BglII	AGATCT	1 cut(s)	622
BisI	GCNGC	3 cut(s)	55, 597, 698
BlsI	GCNGC	3 cut(s)	56, 598, 699
Bme1390I	CCNGG	2 cut(s)	791, 1045
Bme18I	GGWCC	1 cut(s)	679
BmeT110I	CYCGRG	1 cut(s)	983
BmgT120I	GGNCC	2 cut(s)	167, 679
BmrFI	CCNGG	2 cut(s)	791, 1045
BmsI	GCATC	1 cut(s)	1048
BpiI	GAAGAC	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	1176, 1208
BpmI	CTGGAG	1 cut(s)	762
Bsa29I	ATCGAT	1 cut(s)	6
BsaJI	CCNNGG	5 cut(s)	790, 802, 1015, 1043, 1143
BsaXI	ACNNNNNCTCC	2 cut(s)	874, 904
Bsc4I	CCNNNNNNNGG	1 cut(s)	1206
Bse1I	ACTGG	3 cut(s)	274, 824, 1223
BseBI	CCWGG	2 cut(s)	791, 1045
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	5 cut(s)	790, 802, 1015, 1043, 1143
BseGI	GGATG	3 cut(s)	196, 408, 1039
BseLI	CCNNNNNNNGG	1 cut(s)	1206
BseMII	CTCAG	3 cut(s)	26, 45, 200
BseNI	ACTGG	3 cut(s)	274, 824, 1223
BseSI	GKGCMC	2 cut(s)	73, 488
BseXI	GCAGC	3 cut(s)	41, 608, 709
BseYI	CCCAGC	1 cut(s)	811
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	2 cut(s)	168, 801
BshVI	ATCGAT	1 cut(s)	6
BsiHKAI	GWGCWC	2 cut(s)	30, 488
BsiHKCI	CYCGRG	1 cut(s)	983
BslFI	GGGAC	1 cut(s)	936
BslI	CCNNNNNNNGG	1 cut(s)	1206
BsmAI	GTCTC	2 cut(s)	663, 877
BsmFI	GGGAC	1 cut(s)	936
BsnI	GGCC	2 cut(s)	168, 801
BsoBI	CYCGRG	1 cut(s)	983
Bsp1286I	GDGCHC	3 cut(s)	30, 73, 488
Bsp19I	CCATGG	1 cut(s)	802
BspACI	CCGC	1 cut(s)	938
BspANI	GGCC	2 cut(s)	168, 801
BspCNI	CTCAG	3 cut(s)	25, 44, 199
BspDI	ATCGAT	1 cut(s)	6
BspHI	TCATGA	1 cut(s)	1099
BspMAI	CTGCAG	2 cut(s)	106, 323
BspPI	GGATC	4 cut(s)	2, 241, 444, 1079
BsrI	ACTGG	3 cut(s)	274, 824, 1223
BssECI	CCNNGG	5 cut(s)	790, 802, 1015, 1043, 1143
BssT1I	CCWWGG	2 cut(s)	802, 1015
Bst2UI	CCWGG	2 cut(s)	791, 1045
Bst4CI	ACNGT	4 cut(s)	477, 519, 1082, 1151
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	511
BstDEI	CTNAG	5 cut(s)	12, 31, 186, 365, 975
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	3 cut(s)	196, 408, 1039
BstMAI	GTCTC	2 cut(s)	663, 877
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 617, 914
BstNI	CCWGG	2 cut(s)	791, 1045
BstNSI	RCATGY	2 cut(s)	492, 509
BstSCI	CCNGG	2 cut(s)	789, 1043
BstSFI	CTRYAG	4 cut(s)	102, 319, 646, 854
BstSLI	GKGCMC	2 cut(s)	73, 488
BstV1I	GCAGC	3 cut(s)	41, 608, 709
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	3 cut(s)	233, 436, 622
BstXI	CCANNNNNNTGG	1 cut(s)	819
BstYI	RGATCY	3 cut(s)	233, 436, 622
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	168, 801
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	3 cut(s)	196, 408, 1039
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	39, 312, 328
Cac8I	GCNNGC	1 cut(s)	511
CaiI	CAGNNNCTG	2 cut(s)	110, 481
CciI	TCATGA	1 cut(s)	1099
Cfr13I	GGNCC	2 cut(s)	167, 679
ClaI	ATCGAT	1 cut(s)	6
CviAII	CATG	6 cut(s)	489, 506, 803, 850, 879, 1100
DdeI	CTNAG	5 cut(s)	12, 31, 186, 365, 975
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	802, 1015
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	679
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	3 cut(s)	444, 694, 975
Eco88I	CYCGRG	1 cut(s)	983
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	789, 1043
EcoT14I	CCWWGG	2 cut(s)	802, 1015
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	2 cut(s)	802, 1015
FaeI	CATG	6 cut(s)	492, 509, 806, 853, 882, 1103
FaqI	GGGAC	1 cut(s)	936
FatI	CATG	6 cut(s)	488, 505, 802, 849, 878, 1099
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	3 cut(s)	55, 597, 698
FokI	GGATG	3 cut(s)	203, 415, 1026
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	3 cut(s)	55, 597, 698
FspBI	CTAG	4 cut(s)	605, 701, 1007, 1163
GluI	GCNGC	3 cut(s)	55, 597, 698
GsaI	CCCAGC	1 cut(s)	815
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	2 cut(s)	168, 801
Hin1II	CATG	6 cut(s)	492, 509, 806, 853, 882, 1103
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	155, 350, 1025
HphI	GGTGA	4 cut(s)	74, 115, 746, 872
Hpy166II	GTNNAC	4 cut(s)	99, 486, 706, 766
Hpy188I	TCNGA	8 cut(s)	15, 198, 220, 283, 355, 398, 501, 1144
Hpy188III	TCNNGA	8 cut(s)	188, 287, 445, 662, 779, 953, 1100, 1176
Hpy8I	GTNNAC	4 cut(s)	99, 486, 706, 766
HpyAV	CCTTC	3 cut(s)	393, 427, 1061
HpyCH4III	ACNGT	4 cut(s)	477, 519, 1082, 1151
HpyCH4IV	ACGT	3 cut(s)	222, 246, 639
HpyCH4V	TGCA	6 cut(s)	104, 321, 486, 596, 697, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 617, 914
HpyF3I	CTNAG	5 cut(s)	12, 31, 186, 365, 975
HpySE526I	ACGT	3 cut(s)	222, 246, 639
Hsp92II	CATG	6 cut(s)	492, 509, 806, 853, 882, 1103
Ksp22I	TGATCA	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	781
Lsp1109I	GCAGC	3 cut(s)	41, 608, 709
LweI	GCATC	1 cut(s)	1048
MaeI	CTAG	4 cut(s)	605, 701, 1007, 1163
MaeII	ACGT	3 cut(s)	222, 246, 639
MaeIII	GTNAC	3 cut(s)	121, 978, 1136
MboII	GAAGA	4 cut(s)	52, 207, 450, 1199
MflI	RGATCY	3 cut(s)	233, 436, 622
MhlI	GDGCHC	3 cut(s)	30, 73, 488
MluCI	AATT	5 cut(s)	148, 300, 359, 587, 750
MmeI	TCCRAC	1 cut(s)	657
MnlI	CCTC	9 cut(s)	21, 40, 610, 644, 775, 979, 1107, 1138, 1170
MseI	TTAA	4 cut(s)	137, 344, 425, 671
MslI	CAYNNNNRTG	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	815
MspR9I	CCNGG	2 cut(s)	791, 1045
MvaI	CCWGG	2 cut(s)	791, 1045
MwoI	GCNNNNNNNGC	3 cut(s)	318, 617, 914
NcoI	CCATGG	1 cut(s)	802
NlaIII	CATG	6 cut(s)	492, 509, 806, 853, 882, 1103
NmuCI	GTSAC	2 cut(s)	121, 1136
NspI	RCATGY	2 cut(s)	492, 509
PaeR7I	CTCGAG	1 cut(s)	983
PagI	TCATGA	1 cut(s)	1099
PciI	ACATGT	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	155, 350, 1025
PkrI	GCNGC	3 cut(s)	56, 598, 699
PscI	ACATGT	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	789, 1043
PspFI	CCCAGC	1 cut(s)	811
PspGI	CCWGG	2 cut(s)	789, 1043
PspPI	GGNCC	2 cut(s)	167, 679
PspXI	VCTCGAGB	1 cut(s)	983
PstI	CTGCAG	2 cut(s)	106, 323
PstNI	CAGNNNCTG	2 cut(s)	110, 481
PsuI	RGATCY	3 cut(s)	233, 436, 622
PvuII	CAGCTG	1 cut(s)	815
RseI	CAYNNNNRTG	1 cut(s)	633
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	4 cut(s)	137, 344, 425, 671
SatI	GCNGC	3 cut(s)	55, 597, 698
Sau96I	GGNCC	2 cut(s)	167, 679
ScrFI	CCNGG	2 cut(s)	791, 1045
SduI	GDGCHC	3 cut(s)	30, 73, 488
SfaNI	GCATC	1 cut(s)	1048
SfcI	CTRYAG	4 cut(s)	102, 319, 646, 854
Sfr274I	CTCGAG	1 cut(s)	983
SinI	GGWCC	1 cut(s)	679
SlaI	CTCGAG	1 cut(s)	983
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	983
SmoI	CTYRAG	1 cut(s)	983
Sse9I	AATT	5 cut(s)	148, 300, 359, 587, 750
SsiI	CCGC	1 cut(s)	938
SspMI	CTAG	4 cut(s)	605, 701, 1007, 1163
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	789, 1043
StyI	CCWWGG	2 cut(s)	802, 1015
TaaI	ACNGT	4 cut(s)	477, 519, 1082, 1151
TaiI	ACGT	3 cut(s)	225, 249, 642
TaqI	TCGA	5 cut(s)	6, 551, 984, 1177, 1194
TasI	AATT	5 cut(s)	148, 300, 359, 587, 750
TfiI	GAWTC	3 cut(s)	155, 350, 1025
Tru1I	TTAA	4 cut(s)	137, 344, 425, 671
Tru9I	TTAA	4 cut(s)	137, 344, 425, 671
TscAI	CASTG	3 cut(s)	39, 319, 328
TseFI	GTSAC	2 cut(s)	121, 1136
TseI	GCWGC	3 cut(s)	54, 596, 697
Tsp45I	GTSAC	2 cut(s)	121, 1136
TspDTI	ATGAA	4 cut(s)	588, 838, 1008, 1038
TspGWI	ACGGA	2 cut(s)	59, 531
TspRI	CASTG	3 cut(s)	39, 319, 328
VneI	GTGCAC	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	679
XapI	RAATTY	2 cut(s)	148, 587
XceI	RCATGY	2 cut(s)	492, 509
XcmI	CCANNNNNNNNNTGG	2 cut(s)	819, 876
XhoI	CTCGAG	1 cut(s)	983
XmiI	GTMKAC	1 cut(s)	705
XspI	CTAG	4 cut(s)	605, 701, 1007, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.