Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000333.1

Orthogroup ID

OG0006775

Physical Location & Seq

Genomic Coordinates Reverse (-)

46132 .. 59623

Gene Structure 13492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000333.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

atgggttgcgtgtattcgagggtctgtattggagaggttagtagtagtagtagttcaagagatgcgagaaggagagaggcccggaatgcgaggaacactgagatcccagttttctcacccaactcttcaagtgaggacgatggtgagactggagatcagttcaaccaggcaaaccataccagagacgctgaaatggggatcactaggctgtcgagggtttcggcacagtttctacctccaaatgggtcgagaactgtcaaggttccctccggcaagtttgagttgaggtactcgtatttgtcccagagagggtattaccctgatgctctcgataaggccaaccaggacagcttttgcatccacactccgtttgggacgaacccgaatgaccattttttcggggtgtttgatggccatggcgagtttggaaccgagtgttcgcagtttgtcaagaggaagttgtgtgagaatttgcttaggcatggtaagtttcaagtggatgctgtcgaggcgtgtcgcgaggcgtttctcgccacgaattcgcagttgcatgatgacattgtggatgacagcatgagtgggacaacagccattacggttttggttagaggtaggaagatatacattgccaattcgggggattctagagctgttatagcggagaggaatggggaggagttggtggcggtggatctttcgattgatcagaccccgttcagggtggatgagctcgaaagggttaagatttgtggtgcaagagtgctcacattggatcagattgaagggctgaagaatcctgatgtgcagtgttggggcaccgaagaaggtgatgatggtgatccgcctaggctgtgggtgccgaatggaatgtatcctgggaccgcttttaccaggagtattggtgattcgattgctgagtcaattggagttgttgccaaccctgaaattgtggttctggagcttacacagaatcatcctttcttcgtccttgctagtgatggagtgtttgagtttatttctagccaaaccgtggttgatatgtctgtgtgcgcagtggttatgtgcgtgggatgccggattgtggcgaagcaagatcatggtgggatgagatcaatgactgcgggtcgaggtggattggattcgcggtggggcgagtttgggatgttgcgggtcgtggaggcttgggttgacgtaactccgtgtagctcgtggtttgggaggcgcaggggcgacgttgatcggagtaacactggtcgtgtacagcgtggtcgggcggcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04022 ko04540 ko04611 ko04713 ko04714 ko04730 ko04740 ko04923 ko04924 ko04970 map04022 map04540 map04611 map04713 map04714 map04730 map04740 map04923 map04924 map04970

Pfam Domains

Protein Families

PP2C Pkinase cNMP_binding

Protein Analysis

426

Amino Acids

46.85

Weight (kDa)

5.34

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20050 AT2G20050
fragaria_vesca	FvH4_1g05740 FvH4_1g05740 FvH4_1g05740
malus_domestica	MD02G1058500.v1.1 MD15G1192800.v1.1
prunus_persica	Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1 Prupe.7G224500_v2.0.a1
pyrus_communis	pycom02g04740 pycom15g17250 pycom15g17260
rosa_chinensis	RchiOBHm_Chr2g0091381
rosa_laevigata	RLG00000016219
rosa_multiflora	Rmu_ssc0000333.1_g000004 Rmu_ssc0000333.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150130
rosa_rugosa	Rorug02G0017200 Rorug02G0017300
rosa_samantha	Rh2AG062300 Rh2BG061300 Rh2CG063400 Rh2DG061900
rosa_wichuraiana	Rw2G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1051
AccB1I	GGYRCC	2 cut(s)	815, 856
AccB7I	CCANNNNNTGG	1 cut(s)	1030
AccII	CGCG	2 cut(s)	519, 1144
AciI	CCGC	8 cut(s)	659, 686, 842, 882, 1121, 1144, 1168, 1274
AclWI	GGATC	5 cut(s)	97, 206, 699, 780, 833
AcoI	YGGCCR	1 cut(s)	412
AcsI	RAATTY	2 cut(s)	469, 538
AcuI	CTGAAG	1 cut(s)	809
AfaI	GTAC	2 cut(s)	290, 1260
AfiI	CCNNNNNNNGG	7 cut(s)	242, 309, 636, 717, 718, 1030, 1081
AgsI	TTSAA	5 cut(s)	57, 129, 163, 494, 782
AhdI	GACNNNNNGTC	1 cut(s)	1122
AjnI	CCWGG	4 cut(s)	165, 342, 874, 890
AluBI	AGCT	5 cut(s)	351, 650, 730, 961, 1206
AluI	AGCT	5 cut(s)	351, 650, 730, 961, 1206
Alw21I	GWGCWC	2 cut(s)	732, 765
Alw26I	GTCTC	2 cut(s)	140, 177
AlwI	GGATC	5 cut(s)	97, 206, 699, 780, 833
AoxI	GGCC	3 cut(s)	78, 336, 412
ApoI	RAATTY	2 cut(s)	469, 538
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AspA2I	CCTAGG	1 cut(s)	845
AspLEI	GCGC	2 cut(s)	1052, 1224
AspS9I	GGNCC	2 cut(s)	79, 879
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	5 cut(s)	108, 155, 839, 848, 914
AvaII	GGWCC	1 cut(s)	879
AvrII	CCTAGG	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	818
BalI	TGGCCA	1 cut(s)	414
BanI	GGYRCC	2 cut(s)	815, 856
BanII	GRGCYC	1 cut(s)	732
BauI	CACGAG	1 cut(s)	1207
Bbv12I	GWGCWC	2 cut(s)	732, 765
BccI	CCATC	4 cut(s)	134, 404, 827, 992
BciT130I	CCWGG	4 cut(s)	167, 344, 876, 892
BciVI	GTATCC	1 cut(s)	882
BclI	TGATCA	1 cut(s)	703
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	140, 177
BfaI	CTAG	5 cut(s)	204, 645, 846, 993, 1020
BfuI	GTATCC	1 cut(s)	882
BisI	GCNGC	1 cut(s)	1275
BlnI	CCTAGG	1 cut(s)	845
BlsI	GCNGC	1 cut(s)	1276
Bme1390I	CCNGG	5 cut(s)	82, 167, 344, 876, 892
Bme18I	GGWCC	1 cut(s)	879
BmeRI	GACNNNNNGTC	1 cut(s)	1122
BmgT120I	GGNCC	2 cut(s)	79, 879
BmiI	GGNNCC	5 cut(s)	264, 430, 817, 858, 880
BmrFI	CCNGG	5 cut(s)	82, 167, 344, 876, 892
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	5 cut(s)	52, 313, 366, 490, 1061
BmuI	ACTGGG	1 cut(s)	101
BpmI	CTGGAG	2 cut(s)	171, 977
Bpu10I	CCTNAGC	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	837
BsaJI	CCNNGG	4 cut(s)	415, 845, 875, 1029
BsaXI	ACNNNNNCTCC	2 cut(s)	886, 916
Bsc4I	CCNNNNNNNGG	7 cut(s)	242, 309, 636, 717, 718, 1030, 1081
Bse1I	ACTGG	3 cut(s)	107, 154, 1255
Bse3DI	GCAATG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	837
BseBI	CCWGG	4 cut(s)	167, 344, 876, 892
BseDI	CCNNGG	4 cut(s)	415, 845, 875, 1029
BseGI	GGATG	8 cut(s)	357, 505, 571, 730, 973, 1076, 1110, 1167
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	7 cut(s)	242, 309, 636, 717, 718, 1030, 1081
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	2 cut(s)	90, 906
BseNI	ACTGG	3 cut(s)	107, 154, 1255
BseRI	GAGGAG	1 cut(s)	689
BseSI	GKGCMC	1 cut(s)	818
BsgI	GTGCAG	1 cut(s)	824
Bsh1236I	CGCG	2 cut(s)	519, 1144
BshFI	GGCC	3 cut(s)	80, 338, 414
BshNI	GGYRCC	2 cut(s)	815, 856
BsiHKAI	GWGCWC	2 cut(s)	732, 765
BsiSI	CCGG	3 cut(s)	82, 270, 1075
BslFI	GGGAC	4 cut(s)	286, 388, 595, 892
BslI	CCNNNNNNNGG	7 cut(s)	242, 309, 636, 717, 718, 1030, 1081
BsmAI	GTCTC	2 cut(s)	140, 177
BsmBI	CGTCTC	1 cut(s)	177
BsmFI	GGGAC	4 cut(s)	286, 388, 595, 892
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	80, 338, 414
Bsp1286I	GDGCHC	3 cut(s)	732, 765, 818
Bsp1407I	TGTACA	1 cut(s)	1258
Bsp19I	CCATGG	1 cut(s)	415
Bsp68I	TCGCGA	1 cut(s)	519
BspACI	CCGC	8 cut(s)	659, 686, 842, 882, 1121, 1144, 1168, 1274
BspANI	GGCC	3 cut(s)	80, 338, 414
BspCNI	CTCAG	2 cut(s)	91, 907
BspFNI	CGCG	2 cut(s)	519, 1144
BspLI	GGNNCC	5 cut(s)	264, 430, 817, 858, 880
BspPI	GGATC	5 cut(s)	97, 206, 699, 780, 833
BspT107I	GGYRCC	2 cut(s)	815, 856
BsrDI	GCAATG	1 cut(s)	624
BsrGI	TGTACA	1 cut(s)	1258
BsrI	ACTGG	3 cut(s)	107, 154, 1255
BssECI	CCNNGG	4 cut(s)	415, 845, 875, 1029
BssSI	CACGAG	1 cut(s)	1207
BssT1I	CCWWGG	2 cut(s)	415, 845
Bst2BI	CACGAG	1 cut(s)	1207
Bst2UI	CCWGG	4 cut(s)	167, 344, 876, 892
Bst4CI	ACNGT	4 cut(s)	228, 256, 598, 1030
Bst6I	CTCTTC	1 cut(s)	130
BstAUI	TGTACA	1 cut(s)	1258
BstDEI	CTNAG	3 cut(s)	99, 476, 915
BstDSI	CCRYGG	2 cut(s)	415, 1029
BstF5I	GGATG	8 cut(s)	357, 505, 571, 730, 973, 1076, 1110, 1167
BstFNI	CGCG	2 cut(s)	519, 1144
BstHHI	GCGC	2 cut(s)	1052, 1224
BstMAI	GTCTC	2 cut(s)	140, 177
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 509, 530, 656, 856, 1071
BstNI	CCWGG	4 cut(s)	167, 344, 876, 892
BstSCI	CCNGG	5 cut(s)	80, 165, 342, 874, 890
BstSLI	GKGCMC	1 cut(s)	818
BstUI	CGCG	2 cut(s)	519, 1144
BstX2I	RGATCY	2 cut(s)	102, 691
BstYI	RGATCY	2 cut(s)	102, 691
BsuI	GTATCC	1 cut(s)	882
BsuRI	GGCC	3 cut(s)	80, 338, 414
BtgI	CCRYGG	2 cut(s)	415, 1029
BtsCI	GGATG	8 cut(s)	357, 505, 571, 730, 973, 1076, 1110, 1167
BtsI	GCAGTG	2 cut(s)	812, 1059
BtsIMutI	CAGTG	4 cut(s)	96, 812, 1059, 1248
BtuMI	TCGCGA	1 cut(s)	519
CfoI	GCGC	2 cut(s)	1052, 1224
Cfr13I	GGNCC	2 cut(s)	79, 879
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	289, 1259
CviAII	CATG	5 cut(s)	416, 482, 551, 574, 1097
CviQI	GTAC	2 cut(s)	289, 1259
DdeI	CTNAG	3 cut(s)	99, 476, 915
DriI	GACNNNNNGTC	1 cut(s)	1122
EaeI	YGGCCR	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	130
Eam1105I	GACNNNNNGTC	1 cut(s)	1122
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	831
Ecl136II	GAGCTC	1 cut(s)	730
Eco130I	CCWWGG	2 cut(s)	415, 845
Eco24I	GRGCYC	1 cut(s)	732
Eco47I	GGWCC	1 cut(s)	879
Eco53kI	GAGCTC	1 cut(s)	730
Eco57I	CTGAAG	1 cut(s)	809
EcoICRI	GAGCTC	1 cut(s)	730
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	4 cut(s)	165, 342, 874, 890
EcoT14I	CCWWGG	2 cut(s)	415, 845
EcoT38I	GRGCYC	1 cut(s)	732
ErhI	CCWWGG	2 cut(s)	415, 845
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	5 cut(s)	419, 485, 554, 577, 1100
FaqI	GGGAC	4 cut(s)	286, 388, 595, 892
FatI	CATG	5 cut(s)	415, 481, 550, 573, 1096
FauI	CCCGC	2 cut(s)	1114, 1161
FbaI	TGATCA	1 cut(s)	703
Fnu4HI	GCNGC	1 cut(s)	1275
FokI	GGATG	8 cut(s)	344, 512, 578, 737, 960, 1083, 1117, 1174
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	1 cut(s)	1275
FspBI	CTAG	5 cut(s)	204, 645, 846, 993, 1020
FspI	TGCGCA	1 cut(s)	1051
GlaI	GCGC	2 cut(s)	1051, 1223
GluI	GCNGC	1 cut(s)	1275
GsuI	CTGGAG	2 cut(s)	171, 977
HaeIII	GGCC	3 cut(s)	80, 338, 414
HapII	CCGG	3 cut(s)	82, 270, 1075
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	1052, 1224
Hin1II	CATG	5 cut(s)	419, 485, 554, 577, 1100
Hin6I	GCGC	2 cut(s)	1050, 1222
HinP1I	GCGC	2 cut(s)	1050, 1222
HincII	GTYRAC	1 cut(s)	1189
HindII	GTYRAC	1 cut(s)	1189
HinfI	GANTC	6 cut(s)	641, 793, 905, 917, 970, 1139
HpaII	CCGG	3 cut(s)	82, 270, 1075
HphI	GGTGA	5 cut(s)	108, 155, 839, 848, 914
Hpy166II	GTNNAC	2 cut(s)	1189, 1259
Hpy188I	TCNGA	3 cut(s)	708, 777, 1242
Hpy188III	TCNNGA	8 cut(s)	57, 249, 329, 451, 518, 645, 797, 956
Hpy8I	GTNNAC	2 cut(s)	1189, 1259
Hpy99I	CGWCG	1 cut(s)	1235
HpyAV	CCTTC	3 cut(s)	63, 776, 818
HpyCH4III	ACNGT	4 cut(s)	228, 256, 598, 1030
HpyCH4IV	ACGT	2 cut(s)	1191, 1233
HpyCH4V	TGCA	4 cut(s)	357, 550, 755, 805
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 509, 530, 656, 856, 1071
HpyF3I	CTNAG	3 cut(s)	99, 476, 915
HpySE526I	ACGT	2 cut(s)	1191, 1233
Hsp92II	CATG	5 cut(s)	419, 485, 554, 577, 1100
HspAI	GCGC	2 cut(s)	1050, 1222
Ksp22I	TGATCA	1 cut(s)	703
LmnI	GCTCC	1 cut(s)	958
LweI	GCATC	5 cut(s)	52, 313, 366, 490, 1061
MaeI	CTAG	5 cut(s)	204, 645, 846, 993, 1020
MaeII	ACGT	2 cut(s)	1191, 1233
MaeIII	GTNAC	2 cut(s)	1192, 1244
MboII	GAAGA	5 cut(s)	117, 628, 802, 833, 973
MfeI	CAATTG	1 cut(s)	921
MflI	RGATCY	2 cut(s)	102, 691
MhlI	GDGCHC	3 cut(s)	732, 765, 818
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	5 cut(s)	469, 538, 631, 921, 945
MluNI	TGGCCA	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	926
Mox20I	TGGCCA	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	414
MseI	TTAA	1 cut(s)	741
Msp20I	TGGCCA	1 cut(s)	414
MspI	CCGG	3 cut(s)	82, 270, 1075
MspR9I	CCNGG	5 cut(s)	82, 167, 344, 876, 892
MunI	CAATTG	1 cut(s)	921
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	4 cut(s)	167, 344, 876, 892
MvnI	CGCG	2 cut(s)	519, 1144
MwoI	GCNNNNNNNGC	6 cut(s)	86, 509, 530, 656, 856, 1071
NciI	CCSGG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	415
NlaIII	CATG	5 cut(s)	419, 485, 554, 577, 1100
NlaIV	GGNNCC	5 cut(s)	264, 430, 817, 858, 880
NruI	TCGCGA	1 cut(s)	519
NsbI	TGCGCA	1 cut(s)	1051
PcsI	WCGNNNNNNNCGW	1 cut(s)	1261
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	5 cut(s)	641, 793, 905, 970, 1139
PflMI	CCANNNNNTGG	1 cut(s)	1030
PkrI	GCNGC	1 cut(s)	1276
PleI	GAGTC	1 cut(s)	925
PpsI	GAGTC	1 cut(s)	925
Psp124BI	GAGCTC	1 cut(s)	732
Psp6I	CCWGG	4 cut(s)	165, 342, 874, 890
PspGI	CCWGG	4 cut(s)	165, 342, 874, 890
PspN4I	GGNNCC	5 cut(s)	264, 430, 817, 858, 880
PspPI	GGNCC	2 cut(s)	79, 879
PsrI	GAACNNNNNNTAC	2 cut(s)	37, 69
PsuI	RGATCY	2 cut(s)	102, 691
RruI	TCGCGA	1 cut(s)	519
RsaI	GTAC	2 cut(s)	290, 1260
RsaNI	GTAC	2 cut(s)	289, 1259
SacI	GAGCTC	1 cut(s)	732
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	1 cut(s)	1275
Sau96I	GGNCC	2 cut(s)	79, 879
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	5 cut(s)	82, 167, 344, 876, 892
SduI	GDGCHC	3 cut(s)	732, 765, 818
SfaNI	GCATC	5 cut(s)	52, 313, 366, 490, 1061
SinI	GGWCC	1 cut(s)	879
Sse9I	AATT	5 cut(s)	469, 538, 631, 921, 945
SsiI	CCGC	8 cut(s)	659, 686, 842, 882, 1121, 1144, 1168, 1274
SspMI	CTAG	5 cut(s)	204, 645, 846, 993, 1020
SstI	GAGCTC	1 cut(s)	732
StyD4I	CCNGG	5 cut(s)	80, 165, 342, 874, 890
StyI	CCWWGG	2 cut(s)	415, 845
TaaI	ACNGT	4 cut(s)	228, 256, 598, 1030
TaiI	ACGT	2 cut(s)	1194, 1236
TaqI	TCGA	9 cut(s)	17, 212, 248, 330, 507, 698, 732, 908, 1126
TasI	AATT	5 cut(s)	469, 538, 631, 921, 945
TatI	WGTACW	1 cut(s)	1258
TauI	GCSGC	1 cut(s)	1277
TfiI	GAWTC	5 cut(s)	641, 793, 905, 970, 1139
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	4 cut(s)	103, 812, 1059, 1255
TspGWI	ACGGA	2 cut(s)	357, 1188
TspRI	CASTG	4 cut(s)	103, 812, 1059, 1255
Van91I	CCANNNNNTGG	1 cut(s)	1030
VpaK11BI	GGWCC	1 cut(s)	879
XapI	RAATTY	2 cut(s)	469, 538
XbaI	TCTAGA	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	3 cut(s)	368, 422, 598
XmaJI	CCTAGG	1 cut(s)	845
XspI	CTAG	5 cut(s)	204, 645, 846, 993, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.