pycom15g17250

Protein phosphatase 2C and cyclic nucleotide-binding kinase domain-containing

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
12165969 .. 12169382
3414 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17250.5

Sequence Viewer

Length: 1887 bp
ATGGGTTGTGTGTATTCGAGAGTTTGCATTGGAGAGCTTTGTACTCCAAGAGTTCCGAAATTGAAAGAGAGTCAGGATGTGAGGAGCACTGAGATCGATCCAGTGTTCTCTCCTACTTCCTCCAATGGAGAAGTAGGTGAGCTCAGAGACCAATTCAACCAGACTGGCTTAACTGGGGATGCTGAGATGGGTATAACTAGGCTCCGTAGGGTTTCATCACAGTTTCTGCCCCCCAATGGGTCAAGAACTGTCAAGGTCCCTTCAGGAAACTTTGAAATGCGGTATTCGTATTTGTCTCAGAGAGGTTATTACCCTGATGCTCTTGATAAGGCTAACCAAGATAGCTTTTGCATCCACACACCATTTGGGACAAACCCGGATGATCATTTCTTCGGGGTCTTTGATGGTCATGGAGAATTCGGAGCTCAGTGTTCGCAGTTTGTGAAAAGAAAGTTGTGTGAGAATTTGCTTAGGAATAATAAATTTCAAGTGGATGCTGTTGAAGCATGCCATTCTGCATTTATCGCAACCAATTCTCAGTTGCACGCTGATATTTTGGATGATAGCATGAGCGGGACAACTGCAATTACGGTTTTGGTTCGAGGCAGGACGATATGCATTGCGAATTCGGGTGATTCAAGGGCTGTTATAGCAGAGAGGAAAGGGGATGACATTGTAGCTGTGGACCTTTCAATTGATCAAACCCCATTTAGAGTGGACGAGCTCAAAAGGGTTAAGCTTTGTGGTGCAAGAGTTCTTACATTGGATCAAATTGAAGGGCTGAAGAATCCAGATGTGCAGTGTTGGGGAACCGAAGAAAGCGATGATGGTGATCCGCCTAGATTGTGGGTGCCAAATGGAATGTATCCTGGGACAGCTTTTACAAGGAGTCTTGGTGATTCAATTGCTGAGACAATTGGGGTTGTTGCGAACCCTGAAATCGTGGTTTTAGAGCTTACACAGAATAATCCTTTCTTTGTTCTTGCTAGTGATGGAGTTTTTGAGTTCCTTTCTAGCCAAGCTGTGGTGGATATGGTTGCAAAATTTAAAGATCCCCGTGATGCTTGTGCTGCAATTGTAGCTGAATCGTATAAACTCTGGCTGCAGTATGAAACTCGTACAGATGATATTACAGTGATCGTTGTGCATATGTCCATTGGTCAATCAGTAAGCCCTGCTGGTGCTTTACGACCACCTGTTCCTCAAGTTGTAGAGGTTACAGGATGTGAATCTCCTTCACCATCTGGGTGGAACTCTAGGAACCAGCGCACCAGACATGATTTGTCAAAGGCACGCCTTCGTGCGATTGAGAGTTCTCTAGAAAATGGGCAAATTTGGGTTCCTCCATCTCCATCCCACAGAAAGACTTGGGAGGAAGAAGCACACATTGAGCGGGCTTTGCACGACCATTTCCTCTTCAGAAAGCTTACTGATTCTCAGTGTCAGGTGTTATTGGACTGCATGGAAAGGGTTGAGTTCCAGCCTGGAGATGTTGTTGTTAGACAGGGTGGTGAAGGTGACTGCTTTTATGTTGTTGGCAGTGGAGAATTTGAGGTGTTGGCGACCCAGGAAGAAAAGAATGGAGAGGTTCCGAGGGTTCTGCAGCACTATACAGCTGATAAATTGTCATCCTTTGGAGAACTAGCGCTAATGCATAACAAACCACTCCAGGCCTCTGTTCGTGCTGTGACCAGTGGAACTCTTTGGGCTTTGAAAAGAGAAGACTTCCGTGGAATTTTAACGTCAGAGTTTTCTAATTTGTCGTATTTGAAGTTGCTTCGATCGGTGGATCTTCTATCAAGGCTGACAATCTTACAGCTGAGCCATATTGCCGATTCTCTGTCTGAAGTTTCCTTCTCAGAAGGGCAGACGATAGTCAGTGAGTGA

Protein Analysis

629

Amino Acids

69.48

Weight (kDa)

5.14

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 850
AccB7I CCANNNNNTGG 1 cut(s) 1024
AccBSI CCGCTC 2 cut(s) 573, 1393
AciI CCGC 4 cut(s) 280, 573, 836, 1393
AclWI GGATC 5 cut(s) 92, 774, 827, 1046, 1797
AcsI RAATTY 8 cut(s) 416, 463, 482, 625, 1043, 1332, 1547, 1734
AcuI CTGAAG 4 cut(s) 246, 803, 1402, 1866
AfaI GTAC 2 cut(s) 43, 1120
AfeI AGCGCT 1 cut(s) 1647
AfiI CCNNNNNNNGG 3 cut(s) 236, 237, 1024
AjnI CCWGG 4 cut(s) 868, 1483, 1566, 1668
Alw21I GWGCWC 4 cut(s) 89, 144, 427, 726
Alw26I GTCTC 3 cut(s) 141, 300, 905
AlwI GGATC 5 cut(s) 92, 774, 827, 1046, 1797
AlwNI CAGNNNCTG 1 cut(s) 226
Aor51HI AGCGCT 1 cut(s) 1647
AoxI GGCC 1 cut(s) 1671
ApeKI GCWGC 3 cut(s) 1070, 1102, 1603
ApoI RAATTY 8 cut(s) 416, 463, 482, 625, 1043, 1332, 1547, 1734
AspLEI GCGC 2 cut(s) 1269, 1648
AspS9I GGNCC 2 cut(s) 256, 685
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 7 cut(s) 149, 644, 842, 908, 1230, 1523, 1529
AvaII GGWCC 2 cut(s) 256, 685
BanI GGYRCC 1 cut(s) 850
BanII GRGCYC 3 cut(s) 144, 427, 726
BbsI GAAGAC 1 cut(s) 1728
Bbv12I GWGCWC 4 cut(s) 89, 144, 427, 726
BbvI GCAGC 3 cut(s) 1057, 1089, 1615
BccI CCATC 7 cut(s) 181, 398, 821, 986, 1249, 1354, 1360
BcgI CGANNNNNNTGC 4 cut(s) 76, 110, 1582, 1616
BciT130I CCWGG 4 cut(s) 870, 1485, 1568, 1670
BciVI GTATCC 1 cut(s) 876
BclI TGATCA 2 cut(s) 382, 697
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 3 cut(s) 141, 300, 905
BfaI CTAG 7 cut(s) 198, 840, 987, 1014, 1257, 1319, 1643
BfmI CTRYAG 2 cut(s) 1103, 1601
BfoI RGCGCY 1 cut(s) 1649
BfuI GTATCC 1 cut(s) 876
BisI GCNGC 3 cut(s) 1071, 1103, 1604
BlpI GCTNAGC 1 cut(s) 1820
BlsI GCNGC 3 cut(s) 1072, 1104, 1605
Bme1390I CCNGG 5 cut(s) 377, 870, 1485, 1568, 1670
Bme18I GGWCC 2 cut(s) 256, 685
BmgT120I GGNCC 2 cut(s) 256, 685
BmiI GGNNCC 7 cut(s) 203, 258, 811, 852, 1262, 1341, 1590
BmrFI CCNGG 5 cut(s) 377, 870, 1485, 1568, 1670
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 5 cut(s) 169, 307, 360, 484, 1051
BmuI ACTGGG 1 cut(s) 183
BoxI GACNNNNGTC 1 cut(s) 1874
BpiI GAAGAC 1 cut(s) 1728
BpmI CTGGAG 2 cut(s) 1506, 1652
Bpu10I CCTNAGC 1 cut(s) 470
Bpu1102I GCTNAGC 1 cut(s) 1820
BpuEI CTTGAG 1 cut(s) 1188
BpuMI CCSGG 1 cut(s) 377
Bsa29I ATCGAT 1 cut(s) 96
BsaBI GATNNNNATC 2 cut(s) 831, 1228
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 4 cut(s) 869, 1566, 1592, 1729
BsaXI ACNNNNNCTCC 4 cut(s) 880, 910, 1479, 1509
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 237, 1024
Bse1I ACTGG 4 cut(s) 101, 169, 178, 1692
Bse3DI GCAATG 1 cut(s) 618
Bse8I GATNNNNATC 2 cut(s) 831, 1228
BseBI CCWGG 4 cut(s) 870, 1485, 1568, 1670
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 4 cut(s) 869, 1566, 1592, 1729
BseJI GATNNNNATC 2 cut(s) 831, 1228
BseLI CCNNNNNNNGG 3 cut(s) 236, 237, 1024
BseMI GCAATG 1 cut(s) 618
BseNI ACTGG 4 cut(s) 101, 169, 178, 1692
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 3 cut(s) 1057, 1089, 1615
BsgI GTGCAG 1 cut(s) 818
Bsh1285I CGRYCG 1 cut(s) 1784
BshFI GGCC 1 cut(s) 1673
BshNI GGYRCC 1 cut(s) 850
BshVI ATCGAT 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 1784
BsiHKAI GWGCWC 4 cut(s) 89, 144, 427, 726
BsiSI CCGG 1 cut(s) 377
BslFI GGGAC 4 cut(s) 242, 382, 589, 886
BslI CCNNNNNNNGG 3 cut(s) 236, 237, 1024
BsmAI GTCTC 3 cut(s) 141, 300, 905
BsmFI GGGAC 4 cut(s) 242, 382, 589, 886
BsnI GGCC 1 cut(s) 1673
Bso31I GGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 4 cut(s) 89, 144, 427, 726
Bsp1720I GCTNAGC 1 cut(s) 1820
BspACI CCGC 4 cut(s) 280, 573, 836, 1393
BspANI GGCC 1 cut(s) 1673
BspDI ATCGAT 1 cut(s) 96
BspLI GGNNCC 7 cut(s) 203, 258, 811, 852, 1262, 1341, 1590
BspMAI CTGCAG 2 cut(s) 1107, 1605
BspPI GGATC 5 cut(s) 92, 774, 827, 1046, 1797
BspT107I GGYRCC 1 cut(s) 850
BspTNI GGTCTC 1 cut(s) 141
BsrBI CCGCTC 2 cut(s) 573, 1393
BsrDI GCAATG 1 cut(s) 618
BsrI ACTGG 4 cut(s) 101, 169, 178, 1692
BssECI CCNNGG 4 cut(s) 869, 1566, 1592, 1729
Bst2UI CCWGG 4 cut(s) 870, 1485, 1568, 1670
Bst4CI ACNGT 4 cut(s) 222, 250, 592, 1135
Bst6I CTCTTC 1 cut(s) 1421
BstC8I GCNNGC 4 cut(s) 508, 546, 1294, 1395
BstDSI CCRYGG 1 cut(s) 1729
BstH2I RGCGCY 1 cut(s) 1649
BstHHI GCGC 2 cut(s) 1269, 1648
BstMAI GTCTC 3 cut(s) 141, 300, 905
BstMCI CGRYCG 1 cut(s) 1784
BstMWI GCNNNNNNNGC 6 cut(s) 503, 524, 650, 1070, 1079, 1399
BstNI CCWGG 4 cut(s) 870, 1485, 1568, 1670
BstNSI RCATGY 1 cut(s) 510
BstPAI GACNNNNGTC 1 cut(s) 1874
BstSCI CCNGG 5 cut(s) 375, 868, 1483, 1566, 1668
BstSFI CTRYAG 2 cut(s) 1103, 1601
BstV1I GCAGC 3 cut(s) 1057, 1089, 1615
BstV2I GAAGAC 1 cut(s) 1728
BstX2I RGATCY 2 cut(s) 1051, 1789
BstXI CCANNNNNNTGG 1 cut(s) 1248
BstYI RGATCY 2 cut(s) 1051, 1789
Bsu15I ATCGAT 1 cut(s) 96
BsuI GTATCC 1 cut(s) 876
BsuRI GGCC 1 cut(s) 1673
BsuTUI ATCGAT 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 1729
BtgZI GCGATG 1 cut(s) 837
BtsI GCAGTG 2 cut(s) 806, 1546
BtsIMutI CAGTG 9 cut(s) 87, 108, 434, 806, 1140, 1445, 1546, 1699, 1885
Cac8I GCNNGC 4 cut(s) 508, 546, 1294, 1395
CaiI CAGNNNCTG 1 cut(s) 226
CfoI GCGC 2 cut(s) 1269, 1648
Cfr13I GGNCC 2 cut(s) 256, 685
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 2 cut(s) 42, 1119
CviAII CATG 5 cut(s) 410, 507, 568, 1277, 1462
CviQI GTAC 2 cut(s) 42, 1119
DraI TTTAAA 1 cut(s) 1048
Eam1104I CTCTTC 1 cut(s) 1421
EarI CTCTTC 1 cut(s) 1421
EciI GGCGGA 1 cut(s) 825
Ecl136II GAGCTC 3 cut(s) 142, 425, 724
Eco147I AGGCCT 1 cut(s) 1673
Eco24I GRGCYC 3 cut(s) 144, 427, 726
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 256, 685
Eco47III AGCGCT 1 cut(s) 1647
Eco53kI GAGCTC 3 cut(s) 142, 425, 724
Eco57I CTGAAG 4 cut(s) 246, 803, 1402, 1866
EcoICRI GAGCTC 3 cut(s) 142, 425, 724
EcoO109I RGGNCCY 1 cut(s) 256
EcoRI GAATTC 2 cut(s) 416, 625
EcoRII CCWGG 4 cut(s) 868, 1483, 1566, 1668
EcoT22I ATGCAT 2 cut(s) 620, 1656
EcoT38I GRGCYC 3 cut(s) 144, 427, 726
FaeI CATG 5 cut(s) 413, 510, 571, 1280, 1465
FaqI GGGAC 4 cut(s) 242, 382, 589, 886
FatI CATG 5 cut(s) 409, 506, 567, 1276, 1461
FauI CCCGC 2 cut(s) 566, 1386
FauNDI CATATG 1 cut(s) 1149
FbaI TGATCA 2 cut(s) 382, 697
Fnu4HI GCNGC 3 cut(s) 1071, 1103, 1604
FriOI GRGCYC 3 cut(s) 144, 427, 726
Fsp4HI GCNGC 3 cut(s) 1071, 1103, 1604
FspBI CTAG 7 cut(s) 198, 840, 987, 1014, 1257, 1319, 1643
GlaI GCGC 2 cut(s) 1268, 1647
GluI GCNGC 3 cut(s) 1071, 1103, 1604
GsuI CTGGAG 2 cut(s) 1506, 1652
HaeII RGCGCY 1 cut(s) 1649
HaeIII GGCC 1 cut(s) 1673
HapII CCGG 1 cut(s) 377
HhaI GCGC 2 cut(s) 1269, 1648
Hin1II CATG 5 cut(s) 413, 510, 571, 1280, 1465
Hin6I GCGC 2 cut(s) 1267, 1646
HinP1I GCGC 2 cut(s) 1267, 1646
HindIII AAGCTT 2 cut(s) 737, 1424
HinfI GANTC 9 cut(s) 70, 635, 787, 889, 899, 1085, 1229, 1433, 1835
HpaII CCGG 1 cut(s) 377
HphI GGTGA 7 cut(s) 149, 644, 842, 908, 1230, 1523, 1529
Hpy166II GTNNAC 2 cut(s) 685, 718
Hpy188I TCNGA 9 cut(s) 57, 146, 300, 422, 1421, 1593, 1747, 1846, 1861
Hpy188III TCNNGA 7 cut(s) 18, 74, 243, 264, 323, 791, 1319
Hpy8I GTNNAC 2 cut(s) 685, 718
HpyAV CCTTC 7 cut(s) 270, 770, 1245, 1307, 1508, 1856, 1864
HpyCH4III ACNGT 4 cut(s) 222, 250, 592, 1135
HpyCH4IV ACGT 1 cut(s) 1742
HpyF10VI GCNNNNNNNGC 6 cut(s) 503, 524, 650, 1070, 1079, 1399
HpySE526I ACGT 1 cut(s) 1742
Hsp92II CATG 5 cut(s) 413, 510, 571, 1280, 1465
HspAI GCGC 2 cut(s) 1267, 1646
Ksp22I TGATCA 2 cut(s) 382, 697
LmnI GCTCC 3 cut(s) 84, 207, 422
Lsp1109I GCAGC 3 cut(s) 1057, 1089, 1615
LweI GCATC 5 cut(s) 169, 307, 360, 484, 1051
MaeI CTAG 7 cut(s) 198, 840, 987, 1014, 1257, 1319, 1643
MaeII ACGT 1 cut(s) 1742
MaeIII GTNAC 3 cut(s) 1216, 1517, 1687
MbiI CCGCTC 2 cut(s) 573, 1393
MboII GAAGA 8 cut(s) 382, 796, 827, 1388, 1408, 1583, 1733, 1784
MfeI CAATTG 4 cut(s) 693, 903, 915, 1074
MflI RGATCY 2 cut(s) 1051, 1789
MhlI GDGCHC 4 cut(s) 89, 144, 427, 726
MlyI GAGTC 2 cut(s) 79, 898
Mph1103I ATGCAT 2 cut(s) 620, 1656
MseI TTAA 4 cut(s) 170, 735, 1047, 1739
MslI CAYNNNNRTG 1 cut(s) 1246
MspA1I CMGCKG 2 cut(s) 1616, 1819
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 5 cut(s) 377, 870, 1485, 1568, 1670
MunI CAATTG 4 cut(s) 693, 903, 915, 1074
MvaI CCWGG 4 cut(s) 870, 1485, 1568, 1670
MwoI GCNNNNNNNGC 6 cut(s) 503, 524, 650, 1070, 1079, 1399
NciI CCSGG 1 cut(s) 377
NdeI CATATG 1 cut(s) 1149
NlaIII CATG 5 cut(s) 413, 510, 571, 1280, 1465
NlaIV GGNNCC 7 cut(s) 203, 258, 811, 852, 1262, 1341, 1590
NmuCI GTSAC 2 cut(s) 1517, 1687
NsiI ATGCAT 2 cut(s) 620, 1656
NspI RCATGY 1 cut(s) 510
PaeI GCATGC 1 cut(s) 510
PceI AGGCCT 1 cut(s) 1673
PfeI GAWTC 7 cut(s) 635, 787, 899, 1085, 1229, 1433, 1835
PflMI CCANNNNNTGG 1 cut(s) 1024
PkrI GCNGC 3 cut(s) 1072, 1104, 1605
Ple19I CGATCG 1 cut(s) 1784
PleI GAGTC 2 cut(s) 78, 897
PpsI GAGTC 2 cut(s) 78, 897
PpuMI RGGWCCY 1 cut(s) 256
PshAI GACNNNNGTC 1 cut(s) 1874
Psp124BI GAGCTC 3 cut(s) 144, 427, 726
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 4 cut(s) 868, 1483, 1566, 1668
PspGI CCWGG 4 cut(s) 868, 1483, 1566, 1668
PspN4I GGNNCC 7 cut(s) 203, 258, 811, 852, 1262, 1341, 1590
PspPI GGNCC 2 cut(s) 256, 685
PspPPI RGGWCCY 1 cut(s) 256
PstI CTGCAG 2 cut(s) 1107, 1605
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 2 cut(s) 1051, 1789
PvuI CGATCG 1 cut(s) 1784
PvuII CAGCTG 2 cut(s) 1616, 1819
RsaI GTAC 2 cut(s) 43, 1120
RsaNI GTAC 2 cut(s) 42, 1119
RseI CAYNNNNRTG 1 cut(s) 1246
SacI GAGCTC 3 cut(s) 144, 427, 726
SaqAI TTAA 4 cut(s) 170, 735, 1047, 1739
SatI GCNGC 3 cut(s) 1071, 1103, 1604
Sau96I GGNCC 2 cut(s) 256, 685
SchI GAGTC 2 cut(s) 79, 898
ScrFI CCNGG 5 cut(s) 377, 870, 1485, 1568, 1670
SduI GDGCHC 4 cut(s) 89, 144, 427, 726
SfaNI GCATC 5 cut(s) 169, 307, 360, 484, 1051
SfcI CTRYAG 2 cut(s) 1103, 1601
SinI GGWCC 2 cut(s) 256, 685
SmiMI CAYNNNNRTG 1 cut(s) 1246
SmlI CTYRAG 1 cut(s) 1203
SmoI CTYRAG 1 cut(s) 1203
SphI GCATGC 1 cut(s) 510
SseBI AGGCCT 1 cut(s) 1673
SsiI CCGC 4 cut(s) 280, 573, 836, 1393
SspMI CTAG 7 cut(s) 198, 840, 987, 1014, 1257, 1319, 1643
SstI GAGCTC 3 cut(s) 144, 427, 726
StuI AGGCCT 1 cut(s) 1673
StyD4I CCNGG 5 cut(s) 375, 868, 1483, 1566, 1668
TaaI ACNGT 4 cut(s) 222, 250, 592, 1135
TaiI ACGT 1 cut(s) 1745
TaqI TCGA 4 cut(s) 17, 96, 601, 1780
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 7 cut(s) 635, 787, 899, 1085, 1229, 1433, 1835
Tru1I TTAA 4 cut(s) 170, 735, 1047, 1739
Tru9I TTAA 4 cut(s) 170, 735, 1047, 1739
TscAI CASTG 9 cut(s) 94, 108, 434, 806, 1140, 1445, 1546, 1699, 1885
TseFI GTSAC 2 cut(s) 1517, 1687
TseI GCWGC 3 cut(s) 1070, 1102, 1603
Tsp45I GTSAC 2 cut(s) 1517, 1687
TspDTI ATGAA 2 cut(s) 204, 1125
TspGWI ACGGA 2 cut(s) 194, 1718
TspRI CASTG 9 cut(s) 94, 108, 434, 806, 1140, 1445, 1546, 1699, 1885
Van91I CCANNNNNTGG 1 cut(s) 1024
VpaK11BI GGWCC 2 cut(s) 256, 685
XapI RAATTY 8 cut(s) 416, 463, 482, 625, 1043, 1332, 1547, 1734
XbaI TCTAGA 1 cut(s) 1318
XceI RCATGY 1 cut(s) 510
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XspI CTAG 7 cut(s) 198, 840, 987, 1014, 1257, 1319, 1643
Zsp2I ATGCAT 2 cut(s) 620, 1656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.