FvH4_1g06511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014632
Physical Location & Seq
Reverse (-)
3433854 .. 3434237
384 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06511.t1

Sequence Viewer

Length: 255 bp
ATGACCTGTGAACAAAAGGATGACCGGGGGCTTCCGGTCTTTCCTCCTCTGATGATCAAGTCAGAATTTGCAGGCGAAACTTTCTCTATGCCTTCTGCTGCCGTTCCCGGCTCAGTGTCACCACCGAGGTTGAGCCCGGCCCATCCTGCTCATGGATGGGGACCTCGGGGTGGCCTCAATTGTCTTGGTCATGGTGGAATATATGCTGGTTTACGGGCTTGGGAGGTTGTTTCATGCACAACCGACTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

8.9

Weight (kDa)

6.24

Isoelectric Point (pI)

62.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 152, 170
AflIII ACRYGT 1 cut(s) 249
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 2 cut(s) 138, 172
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 139, 161
AsuC2I CCSGG 3 cut(s) 26, 108, 137
AsuHPI GGTGA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 150, 150
BceAI ACGGC 1 cut(s) 86
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 3 cut(s) 26, 108, 137
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 3 cut(s) 26, 108, 137
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 139, 161
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 3 cut(s) 26, 108, 137
BpuMI CCSGG 3 cut(s) 26, 108, 137
BsaJI CCNNGG 3 cut(s) 25, 125, 164
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 170
BseDI CCNNGG 3 cut(s) 25, 125, 164
BseGI GGATG 3 cut(s) 25, 142, 161
BseLI CCNNNNNNNGG 2 cut(s) 152, 170
BseMII CTCAG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 2 cut(s) 140, 174
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 4 cut(s) 25, 35, 108, 137
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 152, 170
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 2 cut(s) 140, 174
BsoBI CYCGRG 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 54
BspANI GGCC 2 cut(s) 140, 174
BspCNI CTCAG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 25, 125, 164
BssMI GATC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 112
BstF5I GGATG 3 cut(s) 25, 142, 161
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 3 cut(s) 24, 106, 135
BstV1I GCAGC 1 cut(s) 85
BsuRI GGCC 2 cut(s) 140, 174
BtsCI GGATG 3 cut(s) 25, 142, 161
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 139, 161
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviAII CATG 4 cut(s) 152, 191, 234, 250
CviJI RGCY 6 cut(s) 31, 111, 135, 140, 174, 218
CviKI_1 RGCY 6 cut(s) 31, 111, 135, 140, 174, 218
DdeI CTNAG 1 cut(s) 112
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 4 cut(s) 155, 194, 237, 253
FaiI YATR 7 cut(s) 89, 153, 192, 202, 204, 235, 251
FaqI GGGAC 1 cut(s) 174
FatI CATG 4 cut(s) 151, 190, 233, 249
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 3 cut(s) 32, 129, 168
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 2 cut(s) 140, 174
HapII CCGG 4 cut(s) 25, 35, 108, 137
Hin1II CATG 4 cut(s) 155, 194, 237, 253
HpaII CCGG 4 cut(s) 25, 35, 108, 137
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 2 cut(s) 11, 212
Hpy188I TCNGA 2 cut(s) 51, 64
Hpy8I GTNNAC 2 cut(s) 11, 212
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 71, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 112
Hsp92II CATG 4 cut(s) 155, 194, 237, 253
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 8 cut(s) 19, 38, 48, 57, 121, 150, 159, 192
Lsp1109I GCAGC 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 117
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MfeI CAATTG 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 2 cut(s) 65, 178
MnlI CCTC 6 cut(s) 54, 57, 120, 174, 185, 217
MspI CCGG 4 cut(s) 25, 35, 108, 137
MspR9I CCNGG 3 cut(s) 26, 108, 137
MunI CAATTG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 3 cut(s) 26, 108, 137
NdeII GATC 1 cut(s) 54
NlaIII CATG 4 cut(s) 155, 194, 237, 253
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 117
NspI RCATGY 1 cut(s) 253
PciI ACATGT 1 cut(s) 249
PkrI GCNGC 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 161
PscI ACATGT 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 2 cut(s) 139, 161
PspPPI RGGWCCY 1 cut(s) 161
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 2 cut(s) 139, 161
ScrFI CCNGG 3 cut(s) 26, 108, 137
SduI GDGCHC 1 cut(s) 137
SetI ASST 4 cut(s) 8, 131, 166, 228
SinI GGWCC 1 cut(s) 161
Sse9I AATT 2 cut(s) 65, 178
StyD4I CCNGG 3 cut(s) 24, 106, 135
TasI AATT 2 cut(s) 65, 178
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.