Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005392.1

Orthogroup ID

OG0014632

Physical Location & Seq

Genomic Coordinates Reverse (-)

59309 .. 60103

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005392.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgatccttgataatgagtataggtgtcgtgttgtgctaatttatgaatttccagagaattcgttccgattctgcatggacatctttttctctgagaccggtgaatggagagaatttgttgtattatgcccggaaagagctattgaatattgcagtatcgacattactgagaaaaactcttacaataatagtggaggccttgtgtacaatggaaagttgtattggttaggcgaaggtggcatcatggagttggatcccttggaatttgacagtaatactagttatagtgatctcatcaatcaggggtattgtcgtttcattcaatttcaagttttcggaaaccctatcttcgaaaagattcgcctaagtgtatgccgagggtgtatgtgcctcgtgtggtttcgggatagtgactttgcaatttgcgagttggaattaggagatgatgatcagttggatggaggcaaatggtgttttacacttactacacggcggtgcatacctcttaaccacgatactgggaggccttggctgctatctttggactcattcaatgaggattgcttctatgtgatctccaaatctggatacttcggcaagggcaacatgaggaccggagtgataaagtacaatacagtgaagcgatgccctggtcttggctttcgggattcatttggagccttcccatttgtgctcccatggtggccgacaccagttcctagaattaaaaatgaccacaaacaaccagttcctagtggtattgacattctgtgcagtttgttactggatccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

264

Amino Acids

30.52

Weight (kDa)

4.85

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06511 FvH4_3g36980 FvH4_4g08883 FvH4_6g17112 FvH4_6g38731 FvH4_6g40891 FvH4_6g40892
malus_domestica	MD05G1324200.v1.1
rosa_laevigata	RLG00000020915
rosa_multiflora	Rmu_sc0005392.1_g000011
rosa_roxburghii	Rroxscaffold_2G00093010
rosa_rugosa	Rorug02G0453200
rosa_samantha	Rh2AG519600 Rh2BG531900 Rh2CG504600 Rh2DG540800 Rh2DG540900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	493
AclWI	GGATC	3 cut(s)	248, 261, 782
AcoI	YGGCCR	1 cut(s)	704
AcsI	RAATTY	4 cut(s)	47, 58, 113, 263
AfaI	GTAC	2 cut(s)	206, 629
AfiI	CCNNNNNNNGG	2 cut(s)	105, 656
AgeI	ACCGGT	1 cut(s)	98
AgsI	TTSAA	4 cut(s)	146, 323, 329, 553
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	649
AjuI	GAANNNNNNNTTGG	2 cut(s)	205, 237
AleI	CACNNNNGTG	1 cut(s)	493
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	3 cut(s)	248, 261, 782
AoxI	GGCC	3 cut(s)	196, 524, 704
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	4 cut(s)	47, 58, 113, 263
AsiGI	ACCGGT	1 cut(s)	98
Asp700I	GAANNNNTTC	2 cut(s)	62, 357
AspS9I	GGNCC	1 cut(s)	612
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	612
BamHI	GGATCC	2 cut(s)	253, 787
BauI	CACGAG	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	696
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	651
BciVI	GTATCC	1 cut(s)	581
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	89
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	3 cut(s)	279, 720, 753
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
Bme1390I	CCNGG	2 cut(s)	131, 651
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	3 cut(s)	255, 679, 789
BmrFI	CCNGG	2 cut(s)	131, 651
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	249, 635
BmuI	ACTGGG	1 cut(s)	528
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
Bpu14I	TTCGAA	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	5 cut(s)	258, 376, 527, 649, 698
BsaWI	WCCGGW	2 cut(s)	98, 614
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 656
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	4 cut(s)	523, 713, 746, 789
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	5 cut(s)	258, 376, 527, 649, 698
BseGI	GGATG	1 cut(s)	463
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	105, 656
BseMII	CTCAG	2 cut(s)	84, 159
BseNI	ACTGG	4 cut(s)	523, 713, 746, 789
BseXI	GCAGC	1 cut(s)	519
BsgI	GTGCAG	1 cut(s)	793
BshFI	GGCC	3 cut(s)	198, 526, 706
BshTI	ACCGGT	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	3 cut(s)	99, 131, 615
BslI	CCNNNNNNNGG	2 cut(s)	105, 656
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	3 cut(s)	198, 526, 706
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	6 cut(s)	3, 253, 289, 448, 573, 787
Bsp19I	CCATGG	1 cut(s)	698
BspACI	CCGC	1 cut(s)	493
BspANI	GGCC	3 cut(s)	198, 526, 706
BspCNI	CTCAG	2 cut(s)	85, 160
BspLI	GGNNCC	3 cut(s)	255, 679, 789
BspPI	GGATC	3 cut(s)	248, 261, 782
BspT104I	TTCGAA	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	204
BsrI	ACTGG	4 cut(s)	523, 713, 746, 789
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	5 cut(s)	258, 376, 527, 649, 698
BssMI	GATC	6 cut(s)	3, 253, 289, 448, 573, 787
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	3 cut(s)	258, 527, 698
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	2 cut(s)	272, 637
BstAUI	TGTACA	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	351
BstDEI	CTNAG	3 cut(s)	93, 168, 365
BstDSI	CCRYGG	1 cut(s)	698
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	6 cut(s)	6, 256, 292, 451, 576, 790
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	6 cut(s)	3, 253, 289, 448, 573, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 532
BstNI	CCWGG	1 cut(s)	651
BstSCI	CCNGG	2 cut(s)	129, 649
BstV1I	GCAGC	1 cut(s)	519
BstX2I	RGATCY	2 cut(s)	253, 787
BstXI	CCANNNNNNTGG	1 cut(s)	518
BstYI	RGATCY	2 cut(s)	253, 787
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	3 cut(s)	198, 526, 706
BtgI	CCRYGG	1 cut(s)	698
BtgZI	GCGATG	1 cut(s)	658
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	642
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	612
Csp6I	GTAC	2 cut(s)	205, 628
CspAI	ACCGGT	1 cut(s)	98
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	4 cut(s)	76, 244, 607, 699
CviJI	RGCY	7 cut(s)	140, 198, 526, 532, 660, 680, 706
CviKI_1	RGCY	7 cut(s)	140, 198, 526, 532, 660, 680, 706
CviQI	GTAC	2 cut(s)	205, 628
DdeI	CTNAG	3 cut(s)	93, 168, 365
DpnI	GATC	6 cut(s)	5, 255, 291, 450, 575, 789
DpnII	GATC	6 cut(s)	3, 253, 289, 448, 573, 787
EaeI	YGGCCR	1 cut(s)	704
Eco130I	CCWWGG	3 cut(s)	258, 527, 698
Eco147I	AGGCCT	2 cut(s)	198, 526
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	612
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	649
EcoT14I	CCWWGG	3 cut(s)	258, 527, 698
ErhI	CCWWGG	3 cut(s)	258, 527, 698
FaeI	CATG	4 cut(s)	79, 247, 610, 702
FatI	CATG	4 cut(s)	75, 243, 606, 698
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	1 cut(s)	533
FspBI	CTAG	3 cut(s)	279, 720, 753
GluI	GCNGC	1 cut(s)	533
HaeIII	GGCC	3 cut(s)	198, 526, 706
HapII	CCGG	3 cut(s)	99, 131, 615
Hin1II	CATG	4 cut(s)	79, 247, 610, 702
HinfI	GANTC	4 cut(s)	69, 358, 545, 668
HpaII	CCGG	3 cut(s)	99, 131, 615
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	3 cut(s)	68, 94, 338
Hpy188III	TCNNGA	4 cut(s)	53, 404, 585, 665
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	227, 691
HpyCH4III	ACNGT	2 cut(s)	272, 637
HpyCH4V	TGCA	5 cut(s)	75, 153, 419, 498, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 532
HpyF3I	CTNAG	3 cut(s)	93, 168, 365
Hsp92II	CATG	4 cut(s)	79, 247, 610, 702
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	3, 253, 289, 448, 573, 787
LmnI	GCTCC	2 cut(s)	677, 699
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	2 cut(s)	249, 635
MaeI	CTAG	3 cut(s)	279, 720, 753
MaeIII	GTNAC	2 cut(s)	410, 780
MalI	GATC	6 cut(s)	5, 255, 291, 450, 575, 789
MboI	GATC	6 cut(s)	3, 253, 289, 448, 573, 787
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	2 cut(s)	253, 787
MhlI	GDGCHC	1 cut(s)	696
MluCI	AATT	9 cut(s)	39, 47, 58, 113, 263, 323, 420, 434, 723
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	3 cut(s)	231, 411, 435
MnlI	CCTC	8 cut(s)	188, 371, 401, 455, 513, 516, 550, 603
MroXI	GAANNNNTTC	2 cut(s)	62, 357
MseI	TTAA	2 cut(s)	507, 726
MslI	CAYNNNNRTG	1 cut(s)	493
MspI	CCGG	3 cut(s)	99, 131, 615
MspR9I	CCNGG	2 cut(s)	131, 651
MvaI	CCWGG	1 cut(s)	651
MwoI	GCNNNNNNNGC	2 cut(s)	237, 532
NciI	CCSGG	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	698
NdeII	GATC	6 cut(s)	3, 253, 289, 448, 573, 787
NlaIII	CATG	4 cut(s)	79, 247, 610, 702
NlaIV	GGNNCC	3 cut(s)	255, 679, 789
NmeAIII	GCCGAG	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	351
OliI	CACNNNNGTG	1 cut(s)	493
PceI	AGGCCT	2 cut(s)	198, 526
PdmI	GAANNNNTTC	2 cut(s)	62, 357
PfeI	GAWTC	3 cut(s)	69, 358, 668
PinAI	ACCGGT	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	534
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	649
PspN4I	GGNNCC	3 cut(s)	255, 679, 789
PspPI	GGNCC	1 cut(s)	612
PsuI	RGATCY	2 cut(s)	253, 787
RsaI	GTAC	2 cut(s)	206, 629
RsaNI	GTAC	2 cut(s)	205, 628
RseI	CAYNNNNRTG	1 cut(s)	493
SaqAI	TTAA	2 cut(s)	507, 726
SatI	GCNGC	1 cut(s)	533
Sau3AI	GATC	6 cut(s)	3, 253, 289, 448, 573, 787
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	2 cut(s)	131, 651
SduI	GDGCHC	1 cut(s)	696
SetI	ASST	4 cut(s)	26, 142, 238, 505
SfaNI	GCATC	2 cut(s)	249, 635
SfuI	TTCGAA	1 cut(s)	351
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	493
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	9 cut(s)	39, 47, 58, 113, 263, 323, 420, 434, 723
SseBI	AGGCCT	2 cut(s)	198, 526
SsiI	CCGC	1 cut(s)	493
SspI	AATATT	1 cut(s)	149
SspMI	CTAG	3 cut(s)	279, 720, 753
StuI	AGGCCT	2 cut(s)	198, 526
StyD4I	CCNGG	2 cut(s)	129, 649
StyI	CCWWGG	3 cut(s)	258, 527, 698
TaaI	ACNGT	2 cut(s)	272, 637
TaqI	TCGA	2 cut(s)	159, 351
TasI	AATT	9 cut(s)	39, 47, 58, 113, 263, 323, 420, 434, 723
TatI	WGTACW	2 cut(s)	204, 627
TfiI	GAWTC	3 cut(s)	69, 358, 668
Tru1I	TTAA	2 cut(s)	507, 726
Tru9I	TTAA	2 cut(s)	507, 726
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	1 cut(s)	532
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	3 cut(s)	60, 307, 660
TspRI	CASTG	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	612
XapI	RAATTY	4 cut(s)	47, 58, 113, 263
XmnI	GAANNNNTTC	2 cut(s)	62, 357
XspI	CTAG	3 cut(s)	279, 720, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.