Rroxscaffold_2G00093010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014632
Physical Location & Seq
Reverse (-)
14439048 .. 14440095
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093010.1

Sequence Viewer

Length: 876 bp
ATGTCCGAGCTTCCGAAATCTTTGAAACACAAATTGGGAAGGAAAGGATGCTGCACAGTACTGGCGACGTACAATGACCTAGTTTTGTGCTTTCCGGATAACTACTACAACATTTGCAATCTACATACCACGCAACGAGTTGCTCTTCCTCCCACCCTTCCCCACCACGACCACCTTGACGTTGCAGAAGTGGGATTTATCTGTGAACCCTATTATAAAGAACAAAATGATACTACTAGAAGAACTATGATCCTCAATAATGAGTATAGGTGTCGTGTTGTGCTAATTTATGAATTTCCAGAGAATTCGTTCCGATTCTGCATGGACATCTTTTTCTCTGAGACCGGTGAATGGAGAGAATTTGTTGTATTATGCCCGGAAAGAGCTATTGAATATTGCAGTATCGACATTACTGAGAAAAACTCTTACAATAATAGTGGAGGCCTTGTGTACAATGGAAAGTTGTATTGGTTAGGCGAAGGTGGCATCATGGAGTTGGATCCCTTGGCATTTGATGGAGATGATGATCAGTCGTCGGATGGAGGCAAATGGTGTTTTACACTTGCTACTCGGCGGTGCATACCTCTCAACCACGATTCTGGGAGACCTTGGCTGCTATCTTTGGACTCATTCAATGAGGATTGCTTCTATGTGATCTCCAAATCTGGATACTTCGGCAAGGGTAACAGGAGGACCGGAGTGATAAAGTACAATACAGTGAAGCGATGCCCTGGTCTTGGTTTTCGGGATTCATTTGGAGCCTTCCCATTTGTGCTCCCATGGTGGCCGACACCAGTTCCTAGAATTAAAAATGACCACAAACAACCAGTTCCTAGTGGTATTGACATTCTGTGCAGTTTGTTACTGGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

291

Amino Acids

33.38

Weight (kDa)

5.83

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 1 cut(s) 574
AclWI GGATC 4 cut(s) 244, 494, 507, 863
AcoI YGGCCR 1 cut(s) 785
AcsI RAATTY 3 cut(s) 293, 304, 359
AfaI GTAC 4 cut(s) 60, 71, 452, 710
AfiI CCNNNNNNNGG 2 cut(s) 351, 737
AgeI ACCGGT 1 cut(s) 344
AgsI TTSAA 3 cut(s) 25, 392, 634
AjnI CCWGG 1 cut(s) 730
AjuI GAANNNNNNNTTGG 4 cut(s) 17, 49, 451, 483
AluBI AGCT 2 cut(s) 10, 386
AluI AGCT 2 cut(s) 10, 386
Alw21I GWGCWC 1 cut(s) 777
Alw26I GTCTC 2 cut(s) 335, 598
AlwI GGATC 4 cut(s) 244, 494, 507, 863
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 2 cut(s) 442, 785
ApeKI GCWGC 2 cut(s) 51, 613
ApoI RAATTY 3 cut(s) 293, 304, 359
AsiGI ACCGGT 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 693
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 359
AvaII GGWCC 1 cut(s) 693
BamHI GGATCC 2 cut(s) 499, 868
Bbv12I GWGCWC 1 cut(s) 777
BbvI GCAGC 2 cut(s) 38, 600
BccI CCATC 2 cut(s) 509, 533
BciT130I CCWGG 1 cut(s) 732
BciVI GTATCC 1 cut(s) 662
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 2 cut(s) 335, 598
BfaI CTAG 4 cut(s) 80, 237, 801, 834
BfuI GTATCC 1 cut(s) 662
BisI GCNGC 2 cut(s) 52, 614
BlsI GCNGC 2 cut(s) 53, 615
BmcAI AGTACT 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 377, 732
Bme18I GGWCC 1 cut(s) 693
BmgT120I GGNCC 1 cut(s) 693
BmiI GGNNCC 3 cut(s) 501, 760, 870
BmrFI CCNGG 2 cut(s) 377, 732
BmsI GCATC 3 cut(s) 38, 495, 716
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpuMI CCSGG 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 525
BsaI GGTCTC 2 cut(s) 335, 598
BsaJI CCNNGG 4 cut(s) 504, 608, 730, 779
BsaWI WCCGGW 3 cut(s) 94, 344, 695
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 737
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 4 cut(s) 66, 794, 827, 870
Bse8I GATNNNNATC 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 1 cut(s) 732
BseDI CCNNGG 4 cut(s) 504, 608, 730, 779
BseGI GGATG 2 cut(s) 53, 544
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 2 cut(s) 351, 737
BseMII CTCAG 2 cut(s) 330, 405
BseNI ACTGG 4 cut(s) 66, 794, 827, 870
BseXI GCAGC 2 cut(s) 38, 600
BsgI GTGCAG 2 cut(s) 37, 874
BshFI GGCC 2 cut(s) 444, 787
BshTI ACCGGT 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 777
BsiSI CCGG 4 cut(s) 95, 345, 377, 696
BslI CCNNNNNNNGG 2 cut(s) 351, 737
BsmAI GTCTC 2 cut(s) 335, 598
BsnI GGCC 2 cut(s) 444, 787
Bso31I GGTCTC 2 cut(s) 335, 598
Bsp1286I GDGCHC 1 cut(s) 777
Bsp13I TCCGGA 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 5 cut(s) 249, 499, 526, 654, 868
Bsp19I CCATGG 1 cut(s) 779
BspACI CCGC 1 cut(s) 574
BspANI GGCC 2 cut(s) 444, 787
BspCNI CTCAG 2 cut(s) 331, 406
BspEI TCCGGA 1 cut(s) 94
BspLI GGNNCC 3 cut(s) 501, 760, 870
BspPI GGATC 4 cut(s) 244, 494, 507, 863
BspQI GCTCTTC 1 cut(s) 150
BspTNI GGTCTC 2 cut(s) 335, 598
BsrFI RCCGGY 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 4 cut(s) 66, 794, 827, 870
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 4 cut(s) 504, 608, 730, 779
BssMI GATC 5 cut(s) 249, 499, 526, 654, 868
BssT1I CCWWGG 3 cut(s) 504, 608, 779
Bst2UI CCWGG 1 cut(s) 732
Bst4CI ACNGT 2 cut(s) 58, 718
Bst6I CTCTTC 1 cut(s) 150
BstAUI TGTACA 1 cut(s) 450
BstDEI CTNAG 2 cut(s) 339, 414
BstDSI CCRYGG 1 cut(s) 779
BstF5I GGATG 2 cut(s) 53, 544
BstKTI GATC 5 cut(s) 252, 502, 529, 657, 871
BstMAI GTCTC 2 cut(s) 335, 598
BstMBI GATC 5 cut(s) 249, 499, 526, 654, 868
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstNI CCWGG 1 cut(s) 732
BstSCI CCNGG 2 cut(s) 375, 730
BstV1I GCAGC 2 cut(s) 38, 600
BstX2I RGATCY 2 cut(s) 499, 868
BstXI CCANNNNNNTGG 1 cut(s) 599
BstYI RGATCY 2 cut(s) 499, 868
BsuI GTATCC 1 cut(s) 662
BsuRI GGCC 2 cut(s) 444, 787
BtgI CCRYGG 1 cut(s) 779
BtgZI GCGATG 1 cut(s) 739
BtsCI GGATG 2 cut(s) 53, 544
BtsIMutI CAGTG 1 cut(s) 723
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 693
Csp6I GTAC 4 cut(s) 59, 70, 451, 709
CspAI ACCGGT 1 cut(s) 344
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 3 cut(s) 322, 490, 780
CviJI RGCY 6 cut(s) 10, 386, 444, 613, 761, 787
CviKI_1 RGCY 6 cut(s) 10, 386, 444, 613, 761, 787
CviQI GTAC 4 cut(s) 59, 70, 451, 709
DdeI CTNAG 2 cut(s) 339, 414
DpnI GATC 5 cut(s) 251, 501, 528, 656, 870
DpnII GATC 5 cut(s) 249, 499, 526, 654, 868
EaeI YGGCCR 1 cut(s) 785
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 3 cut(s) 504, 608, 779
Eco147I AGGCCT 1 cut(s) 444
Eco31I GGTCTC 2 cut(s) 335, 598
Eco47I GGWCC 1 cut(s) 693
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 730
EcoT14I CCWWGG 3 cut(s) 504, 608, 779
ErhI CCWWGG 3 cut(s) 504, 608, 779
FaeI CATG 3 cut(s) 325, 493, 783
FatI CATG 3 cut(s) 321, 489, 779
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 2 cut(s) 52, 614
FokI GGATG 2 cut(s) 60, 551
Fsp4HI GCNGC 2 cut(s) 52, 614
FspBI CTAG 4 cut(s) 80, 237, 801, 834
GluI GCNGC 2 cut(s) 52, 614
HaeIII GGCC 2 cut(s) 444, 787
HapII CCGG 4 cut(s) 95, 345, 377, 696
Hin1II CATG 3 cut(s) 325, 493, 783
HinfI GANTC 4 cut(s) 315, 596, 626, 749
HpaII CCGG 4 cut(s) 95, 345, 377, 696
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 2 cut(s) 206, 451
Hpy188I TCNGA 5 cut(s) 7, 15, 314, 340, 538
Hpy188III TCNNGA 4 cut(s) 95, 299, 666, 746
Hpy8I GTNNAC 2 cut(s) 206, 451
Hpy99I CGWCG 2 cut(s) 70, 538
HpyAV CCTTC 4 cut(s) 33, 167, 473, 772
HpyCH4III ACNGT 2 cut(s) 58, 718
HpyCH4IV ACGT 2 cut(s) 68, 180
HpyCH4V TGCA 7 cut(s) 54, 117, 185, 321, 399, 579, 855
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 2 cut(s) 339, 414
HpySE526I ACGT 2 cut(s) 68, 180
Hsp92II CATG 3 cut(s) 325, 493, 783
Kpn2I TCCGGA 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 5 cut(s) 249, 499, 526, 654, 868
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 2 cut(s) 758, 780
Lsp1109I GCAGC 2 cut(s) 38, 600
LweI GCATC 3 cut(s) 38, 495, 716
MaeI CTAG 4 cut(s) 80, 237, 801, 834
MaeII ACGT 2 cut(s) 68, 180
MaeIII GTNAC 2 cut(s) 683, 861
MalI GATC 5 cut(s) 251, 501, 528, 656, 870
MboI GATC 5 cut(s) 249, 499, 526, 654, 868
MboII GAAGA 2 cut(s) 137, 252
MflI RGATCY 2 cut(s) 499, 868
MhlI GDGCHC 1 cut(s) 777
MluCI AATT 6 cut(s) 32, 285, 293, 304, 359, 804
MlyI GAGTC 1 cut(s) 620
MmeI TCCRAC 2 cut(s) 477, 516
MnlI CCTC 7 cut(s) 159, 263, 434, 536, 594, 631, 684
MroI TCCGGA 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 1 cut(s) 807
MspI CCGG 4 cut(s) 95, 345, 377, 696
MspR9I CCNGG 2 cut(s) 377, 732
MvaI CCWGG 1 cut(s) 732
MwoI GCNNNNNNNGC 1 cut(s) 483
NciI CCSGG 1 cut(s) 377
NcoI CCATGG 1 cut(s) 779
NdeII GATC 5 cut(s) 249, 499, 526, 654, 868
NlaIII CATG 3 cut(s) 325, 493, 783
NlaIV GGNNCC 3 cut(s) 501, 760, 870
NmeAIII GCCGAG 1 cut(s) 550
PceI AGGCCT 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 3 cut(s) 315, 596, 749
PinAI ACCGGT 1 cut(s) 344
PkrI GCNGC 2 cut(s) 53, 615
PleI GAGTC 1 cut(s) 620
PpsI GAGTC 1 cut(s) 620
PsiI TTATAA 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 730
PspGI CCWGG 1 cut(s) 730
PspN4I GGNNCC 3 cut(s) 501, 760, 870
PspPI GGNCC 1 cut(s) 693
PsuI RGATCY 2 cut(s) 499, 868
RsaI GTAC 4 cut(s) 60, 71, 452, 710
RsaNI GTAC 4 cut(s) 59, 70, 451, 709
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 807
SatI GCNGC 2 cut(s) 52, 614
Sau3AI GATC 5 cut(s) 249, 499, 526, 654, 868
Sau96I GGNCC 1 cut(s) 693
ScaI AGTACT 1 cut(s) 60
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 2 cut(s) 377, 732
SduI GDGCHC 1 cut(s) 777
SfaNI GCATC 3 cut(s) 38, 495, 716
SinI GGWCC 1 cut(s) 693
Sse9I AATT 6 cut(s) 32, 285, 293, 304, 359, 804
SseBI AGGCCT 1 cut(s) 444
SsiI CCGC 1 cut(s) 574
SspI AATATT 1 cut(s) 395
SspMI CTAG 4 cut(s) 80, 237, 801, 834
StuI AGGCCT 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 375, 730
StyI CCWWGG 3 cut(s) 504, 608, 779
TaaI ACNGT 2 cut(s) 58, 718
TaiI ACGT 2 cut(s) 71, 183
TaqI TCGA 1 cut(s) 405
TasI AATT 6 cut(s) 32, 285, 293, 304, 359, 804
TatI WGTACW 3 cut(s) 58, 450, 708
TfiI GAWTC 3 cut(s) 315, 596, 749
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TscAI CASTG 1 cut(s) 723
TseI GCWGC 2 cut(s) 51, 613
TspDTI ATGAA 2 cut(s) 306, 741
TspRI CASTG 1 cut(s) 723
VpaK11BI GGWCC 1 cut(s) 693
XapI RAATTY 3 cut(s) 293, 304, 359
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 4 cut(s) 80, 237, 801, 834
ZrmI AGTACT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.