Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014632

Physical Location & Seq

Genomic Coordinates Reverse (-)

11095236 .. 11096379

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17112.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAATGATTTAGATGAAACCACAAATTGGCTTCAAACTGAGTCAGAACATGAAGATGAAGATTCAAATATGGTTCCGGTTGATGAAGAAGAAGAAAGCGAGAGTCTAGAGGGGGATGAGTTAGTCACATATTTTAATGGGAAGTCGTACAAGGACCTTACACTTGGTATTAATAAGAGTTTTACCGTCTGTTTCTGTACAATCCCGGACAAGTTCGCAGAAGCTGATGATGTGTCTGGTGGATGGTCTGCTATCTTCCTGCTGACCTGCAATAACAAGGGGACCGGGGGCTTCCGGTCTTTCCTTCTCCGAAGCTTAAGTCAGTATTTTGTGATACCTCGGGGCGGCCTCGGTTATGGTGGAACGCCGGCTGGTTTACGGGCTTGGGAGGTTGTTTTATGCACAACCAACTACAAGTCCCCCCAAGTTCCAGTGCAAGCAACCGACTACAAGTCCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.95

Weight (kDa)

4.25

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06511 FvH4_3g36980 FvH4_4g08883 FvH4_6g17112 FvH4_6g38731 FvH4_6g40891 FvH4_6g40892
malus_domestica	MD05G1324200.v1.1
rosa_laevigata	RLG00000020915
rosa_multiflora	Rmu_sc0005392.1_g000011
rosa_roxburghii	Rroxscaffold_2G00093010
rosa_rugosa	Rorug02G0453200
rosa_samantha	Rh2AG519600 Rh2BG531900 Rh2CG504600 Rh2DG540800 Rh2DG540900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	27
AciI	CCGC	1 cut(s)	345
AfaI	GTAC	2 cut(s)	149, 199
AfiI	CCNNNNNNNGG	2 cut(s)	27, 344
AflII	CTTAAG	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	35, 66
AhdI	GACNNNNNGTC	1 cut(s)	451
AluBI	AGCT	2 cut(s)	224, 315
AluI	AGCT	2 cut(s)	224, 315
AlwNI	CAGNNNCTG	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	1 cut(s)	346
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
AseI	ATTAAT	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	154, 282
AsuC2I	CCSGG	2 cut(s)	206, 286
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	2 cut(s)	154, 282
BccI	CCATC	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	206, 286
BfaI	CTAG	1 cut(s)	107
BfrI	CTTAAG	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	275
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	206, 286
Bme18I	GGWCC	2 cut(s)	154, 282
BmeRI	GACNNNNNGTC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	154, 282
BmiI	GGNNCC	2 cut(s)	75, 283
BmrFI	CCNGG	2 cut(s)	206, 286
BpuMI	CCSGG	2 cut(s)	206, 286
BsaJI	CCNNGG	3 cut(s)	285, 338, 349
BsaWI	WCCGGW	2 cut(s)	76, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 344
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	431
BseDI	CCNNGG	3 cut(s)	285, 338, 349
BseGI	GGATG	2 cut(s)	121, 248
BseLI	CCNNNNNNNGG	2 cut(s)	27, 344
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	431
BshFI	GGCC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	5 cut(s)	77, 206, 285, 295, 368
BslFI	GGGAC	3 cut(s)	295, 403, 439
BslI	CCNNNNNNNGG	2 cut(s)	27, 344
BsmFI	GGGAC	3 cut(s)	295, 403, 439
BsnI	GGCC	1 cut(s)	348
BsoBI	CYCGRG	1 cut(s)	339
Bsp1407I	TGTACA	1 cut(s)	197
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	75, 283
BspMI	ACCTGC	1 cut(s)	275
BspTI	CTTAAG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	367
BsrGI	TGTACA	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	285, 338, 349
Bst4CI	ACNGT	1 cut(s)	187
BstAFI	CTTAAG	1 cut(s)	316
BstAUI	TGTACA	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	369, 438
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	121, 248
BstSCI	CCNGG	2 cut(s)	204, 284
BsuRI	GGCC	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	121, 248
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	369, 438
CaiI	CAGNNNCTG	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	154, 282
Csp6I	GTAC	2 cut(s)	148, 198
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	7 cut(s)	31, 224, 291, 315, 348, 371, 383
CviKI_1	RGCY	7 cut(s)	31, 224, 291, 315, 348, 371, 383
CviQI	GTAC	2 cut(s)	148, 198
DdeI	CTNAG	1 cut(s)	39
DriI	GACNNNNNGTC	1 cut(s)	451
Eam1105I	GACNNNNNGTC	1 cut(s)	451
Eco47I	GGWCC	2 cut(s)	154, 282
Eco88I	CYCGRG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	154
FaeI	CATG	1 cut(s)	53
FaiI	YATR	5 cut(s)	51, 71, 130, 357, 400
FaqI	GGGAC	3 cut(s)	295, 403, 439
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	346
FokI	GGATG	2 cut(s)	128, 255
Fsp4HI	GCNGC	1 cut(s)	346
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	5 cut(s)	77, 206, 285, 295, 368
Hin1II	CATG	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	3 cut(s)	41, 62, 103
HpaII	CCGG	5 cut(s)	77, 206, 285, 295, 368
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	46, 311
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	270, 402, 436
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	124
MboII	GAAGA	6 cut(s)	65, 71, 98, 101, 104, 247
MluCI	AATT	1 cut(s)	25
MlyI	GAGTC	2 cut(s)	50, 112
MnlI	CCTC	4 cut(s)	103, 348, 359, 382
MroNI	GCCGGC	1 cut(s)	367
MseI	TTAA	3 cut(s)	135, 171, 317
MslI	CAYNNNNRTG	1 cut(s)	54
MspCI	CTTAAG	1 cut(s)	316
MspI	CCGG	5 cut(s)	77, 206, 285, 295, 368
MspR9I	CCNGG	2 cut(s)	206, 286
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	2 cut(s)	206, 286
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	2 cut(s)	75, 283
NmuCI	GTSAC	1 cut(s)	124
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	347
PleI	GAGTC	2 cut(s)	49, 111
PpsI	GAGTC	2 cut(s)	49, 111
PpuMI	RGGWCCY	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	75, 283
PspPI	GGNCC	2 cut(s)	154, 282
PspPPI	RGGWCCY	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	149, 199
RsaNI	GTAC	2 cut(s)	148, 198
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	135, 171, 317
SatI	GCNGC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	154, 282
SchI	GAGTC	2 cut(s)	50, 112
ScrFI	CCNGG	2 cut(s)	206, 286
SetI	ASST	6 cut(s)	159, 226, 269, 317, 340, 393
SinI	GGWCC	2 cut(s)	154, 282
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	204, 284
TaaI	ACNGT	1 cut(s)	187
TasI	AATT	1 cut(s)	25
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	3 cut(s)	135, 171, 317
Tru9I	TTAA	3 cut(s)	135, 171, 317
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	5 cut(s)	17, 30, 66, 72, 99
TspRI	CASTG	1 cut(s)	438
Van91I	CCANNNNNTGG	1 cut(s)	27
Vha464I	CTTAAG	1 cut(s)	316
VpaK11BI	GGWCC	2 cut(s)	154, 282
VspI	ATTAAT	1 cut(s)	171
XbaI	TCTAGA	1 cut(s)	106
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.