RLG00000020915

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014632
Physical Location & Seq
Forward (+)
70099380 .. 70100111
732 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020915

Sequence Viewer

Length: 732 bp
ATGATCCTCGATAATGAGTATAGGTGTCGTGTTGTGCTAATTTATGAATTTCCAGAGAATTCGTTCCGATTCTGCATGGACATCTTTTTCTCTGAGACCGGTGAATGGAGAGAATTTGTTGTATTATGCCCGGAAAGAGCTATTGAATATTGTAGTATCGACATTACTGAGAAAAACTCTTACAATAATAGTGGAGGCCTTGTGTACAATGGAAAGTTGTATTGGTTAGGAGAAGGTGGCATCATGGAGTTGGATCCCTTGGCATTTGACGGTAATACTAGTTATAGTGATCTCATCAATCGGGGGTATTGTCGTTTCATACAATTTCAAGTTTTCGGAAACCCTATGTTCGAAAAGATTCGCCTAGGTGTATGCCGAGGGTGTATGTGCCTCGTGTGGTTTCGGGATAGTGAATTTGAGATTTGCGAGTTGGAATTAGGAGATGATGATCAGTCGTCGGATGGAGGCAAATGGTGTTTTACACTTGCTACACGGCGGTGCATACCTCTCAACCACGATACTGGGAGGCCTTGGCTGCTATCTTTCGACTCATTCAATGAGGATTACTTCTCTGTGATCTCCAAATCTGGATACTTCGGCAAGGGCAACATGAGGACCGGAGTGATAAAGTACAATACAGTGAAGCGATGCCCTGGTCTTGGTTTTCGGGATTCATTTGGAGCCTTCCCAATTCCCATTTGTGCTCCCATGGGGGCCGACACCAGTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

244

Amino Acids

27.84

Weight (kDa)

4.77

Isoelectric Point (pI)

24.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 496
AclWI GGATC 2 cut(s) 248, 261
AcsI RAATTY 4 cut(s) 47, 58, 113, 413
AfaI GTAC 2 cut(s) 206, 632
AfiI CCNNNNNNNGG 2 cut(s) 105, 659
AgeI ACCGGT 1 cut(s) 98
AgsI TTSAA 3 cut(s) 146, 329, 556
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AleI CACNNNNGTG 1 cut(s) 496
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 706
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 2 cut(s) 248, 261
AoxI GGCC 3 cut(s) 196, 527, 714
ApeKI GCWGC 1 cut(s) 535
ApoI RAATTY 4 cut(s) 47, 58, 113, 413
AsiGI ACCGGT 1 cut(s) 98
Asp700I GAANNNNTTC 2 cut(s) 62, 357
AspA2I CCTAGG 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 615, 714
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 351
AvaII GGWCC 1 cut(s) 615
AvrII CCTAGG 1 cut(s) 364
BamHI GGATCC 1 cut(s) 253
BauI CACGAG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 706
BbvI GCAGC 1 cut(s) 522
BccI CCATC 1 cut(s) 455
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 1 cut(s) 654
BciVI GTATCC 1 cut(s) 584
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 89
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 3 cut(s) 279, 365, 730
BfuI GTATCC 1 cut(s) 584
BisI GCNGC 1 cut(s) 536
BlnI CCTAGG 1 cut(s) 364
BlsI GCNGC 1 cut(s) 537
Bme1390I CCNGG 2 cut(s) 131, 654
Bme18I GGWCC 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 615, 714
BmiI GGNNCC 3 cut(s) 255, 682, 715
BmrFI CCNGG 2 cut(s) 131, 654
BmrI ACTGGG 1 cut(s) 531
BmsI GCATC 2 cut(s) 249, 638
BmuI ACTGGG 1 cut(s) 531
BplI GAGNNNNNCTC 2 cut(s) 161, 193
Bpu14I TTCGAA 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 447
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 6 cut(s) 258, 364, 376, 530, 652, 708
BsaWI WCCGGW 2 cut(s) 98, 617
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 659
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 526, 723
Bse8I GATNNNNATC 1 cut(s) 447
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 6 cut(s) 258, 364, 376, 530, 652, 708
BseGI GGATG 1 cut(s) 466
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 105, 659
BseMII CTCAG 2 cut(s) 84, 159
BseNI ACTGG 2 cut(s) 526, 723
BseXI GCAGC 1 cut(s) 522
BshFI GGCC 3 cut(s) 198, 529, 716
BshTI ACCGGT 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 706
BsiSI CCGG 3 cut(s) 99, 131, 618
BslI CCNNNNNNNGG 2 cut(s) 105, 659
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 3 cut(s) 198, 529, 716
Bso31I GGTCTC 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 706
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 5 cut(s) 3, 253, 289, 448, 576
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 1 cut(s) 496
BspANI GGCC 3 cut(s) 198, 529, 716
BspCNI CTCAG 2 cut(s) 85, 160
BspLI GGNNCC 3 cut(s) 255, 682, 715
BspPI GGATC 2 cut(s) 248, 261
BspT104I TTCGAA 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 2 cut(s) 526, 723
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 6 cut(s) 258, 364, 376, 530, 652, 708
BssMI GATC 5 cut(s) 3, 253, 289, 448, 576
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 4 cut(s) 258, 364, 530, 708
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 2 cut(s) 272, 640
BstAUI TGTACA 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 93, 168
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 5 cut(s) 6, 256, 292, 451, 579
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 5 cut(s) 3, 253, 289, 448, 576
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 2 cut(s) 129, 652
BstV1I GCAGC 1 cut(s) 522
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 521
BstYI RGATCY 1 cut(s) 253
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 3 cut(s) 198, 529, 716
BtgI CCRYGG 1 cut(s) 708
BtgZI GCGATG 1 cut(s) 661
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 645
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 615, 714
Csp6I GTAC 2 cut(s) 205, 631
CspAI ACCGGT 1 cut(s) 98
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 4 cut(s) 76, 244, 610, 709
CviJI RGCY 6 cut(s) 140, 198, 529, 535, 683, 716
CviKI_1 RGCY 6 cut(s) 140, 198, 529, 535, 683, 716
CviQI GTAC 2 cut(s) 205, 631
DdeI CTNAG 2 cut(s) 93, 168
DpnI GATC 5 cut(s) 5, 255, 291, 450, 578
DpnII GATC 5 cut(s) 3, 253, 289, 448, 576
Eco130I CCWWGG 4 cut(s) 258, 364, 530, 708
Eco147I AGGCCT 2 cut(s) 198, 529
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 615
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 4 cut(s) 258, 364, 530, 708
ErhI CCWWGG 4 cut(s) 258, 364, 530, 708
FaeI CATG 4 cut(s) 79, 247, 613, 712
FatI CATG 4 cut(s) 75, 243, 609, 708
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 1 cut(s) 473
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 3 cut(s) 279, 365, 730
GluI GCNGC 1 cut(s) 536
HaeIII GGCC 3 cut(s) 198, 529, 716
HapII CCGG 3 cut(s) 99, 131, 618
Hin1II CATG 4 cut(s) 79, 247, 613, 712
HinfI GANTC 4 cut(s) 69, 358, 548, 671
HpaII CCGG 3 cut(s) 99, 131, 618
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 4 cut(s) 68, 94, 338, 460
Hpy188III TCNNGA 4 cut(s) 53, 404, 588, 668
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 460
HpyAV CCTTC 2 cut(s) 227, 694
HpyCH4III ACNGT 2 cut(s) 272, 640
HpyCH4V TGCA 2 cut(s) 75, 501
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 2 cut(s) 93, 168
Hsp92II CATG 4 cut(s) 79, 247, 613, 712
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 5 cut(s) 3, 253, 289, 448, 576
LmnI GCTCC 2 cut(s) 680, 709
LpnPI CCDG 8 cut(s) 66, 112, 144, 507, 573, 631, 639, 666
Lsp1109I GCAGC 1 cut(s) 522
LweI GCATC 2 cut(s) 249, 638
MaeI CTAG 3 cut(s) 279, 365, 730
MalI GATC 5 cut(s) 5, 255, 291, 450, 578
MboI GATC 5 cut(s) 3, 253, 289, 448, 576
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 706
MluCI AATT 8 cut(s) 39, 47, 58, 113, 323, 413, 434, 690
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 3 cut(s) 231, 411, 438
MnlI CCTC 9 cut(s) 17, 188, 371, 401, 458, 516, 519, 553, 606
MroXI GAANNNNTTC 2 cut(s) 62, 357
MslI CAYNNNNRTG 1 cut(s) 496
MspI CCGG 3 cut(s) 99, 131, 618
MspR9I CCNGG 2 cut(s) 131, 654
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 535
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 708
NdeII GATC 5 cut(s) 3, 253, 289, 448, 576
NlaIII CATG 4 cut(s) 79, 247, 613, 712
NlaIV GGNNCC 3 cut(s) 255, 682, 715
NmeAIII GCCGAG 1 cut(s) 401
NspV TTCGAA 1 cut(s) 351
OliI CACNNNNGTG 1 cut(s) 496
PceI AGGCCT 2 cut(s) 198, 529
PdmI GAANNNNTTC 2 cut(s) 62, 357
PfeI GAWTC 3 cut(s) 69, 358, 671
PinAI ACCGGT 1 cut(s) 98
PkrI GCNGC 1 cut(s) 537
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 255, 682, 715
PspPI GGNCC 2 cut(s) 615, 714
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 206, 632
RsaNI GTAC 2 cut(s) 205, 631
RseI CAYNNNNRTG 1 cut(s) 496
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 5 cut(s) 3, 253, 289, 448, 576
Sau96I GGNCC 2 cut(s) 615, 714
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 2 cut(s) 131, 654
SduI GDGCHC 1 cut(s) 706
SetI ASST 5 cut(s) 26, 142, 238, 370, 508
SfaNI GCATC 2 cut(s) 249, 638
SfuI TTCGAA 1 cut(s) 351
SinI GGWCC 1 cut(s) 615
SmiMI CAYNNNNRTG 1 cut(s) 496
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 8 cut(s) 39, 47, 58, 113, 323, 413, 434, 690
SseBI AGGCCT 2 cut(s) 198, 529
SsiI CCGC 1 cut(s) 496
SspI AATATT 1 cut(s) 149
SspMI CTAG 3 cut(s) 279, 365, 730
StuI AGGCCT 2 cut(s) 198, 529
StyD4I CCNGG 2 cut(s) 129, 652
StyI CCWWGG 4 cut(s) 258, 364, 530, 708
TaaI ACNGT 2 cut(s) 272, 640
TaqI TCGA 4 cut(s) 9, 159, 351, 546
TasI AATT 8 cut(s) 39, 47, 58, 113, 323, 413, 434, 690
TatI WGTACW 2 cut(s) 204, 630
TfiI GAWTC 3 cut(s) 69, 358, 671
TscAI CASTG 1 cut(s) 645
TseI GCWGC 1 cut(s) 535
TspDTI ATGAA 3 cut(s) 60, 307, 663
TspRI CASTG 1 cut(s) 645
VpaK11BI GGWCC 1 cut(s) 615
XapI RAATTY 4 cut(s) 47, 58, 113, 413
XmaJI CCTAGG 1 cut(s) 364
XmnI GAANNNNTTC 2 cut(s) 62, 357
XspI CTAG 3 cut(s) 279, 365, 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.