Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014632

Physical Location & Seq

Genomic Coordinates Forward (+)

31681793 .. 31687140

Gene Structure 5348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGTTGATAGTGGATTCTCTTTACCTGAAAACCAATGTGGGAAAACTGTATTTGCTGCTACTTCACACCCAGTTCCCTTATGCCTTTTGAAACCACTTCCCAGCCTAATATTGCCACTGAGGTTGGGCCCGGCCCACCCTACTTATTGGTGGATACCTCGGGGCGGCCTCGGTTATGGTGGAACGCCGGTTGGTTTACGGGCTTGGGAGGAATTGGCGAGGCTAGGTGCAACGGTCCATACTTGTGCTTGGAATGAAGTCCAACTCAATCAGCGATTGAGTCAATGGAAGACCAAGGGTTTTCATCAAGTCACTGGTTCGGTCTGTGATTTGGTCTCAAAGCCCCAACGAGAGGAGCTCATGTACAAGGTCTCATCATTGTTCGATGGGAAACTAAACATCCTTATAAACAATGCGGGAACCAATATATCAAAGCCCACAGCTGACTACACAGCTGAAGATTACTCATTTCTTATGGGAACCAATCTTGAATCTTCTTACAATATGTGCCAACTCGAACATCCTCTCCTCAAAGCTTCAGGAGCTGGTAACATTGTTCTTATATCTTCTATTGCTGGTGTGGTATTAGTTGGGGGATGTGGTAGTATCTATTCTGCCAGTAAAGGTAGGAAGATGAGCTTCAGATCAGTGAATGAAGGAGGAGATGCCCAAGGTTCGCCTATTCCTTCAGATCTAAATTCAGAAACCACTGTTTCCTCCAAGCCCACTCTCGACAGGTTCATTGGGAAGCCTGCCCCAAAGCCTCAGCCGGAGACTCAAATTCCGGCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

265

Amino Acids

28.37

Weight (kDa)

8.49

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	64 - 209	1.8e-24	short chain dehydrogenase
adh_short_C2	PF13561	70 - 209	1.5e-17	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06511 FvH4_3g36980 FvH4_4g08883 FvH4_6g17112 FvH4_6g38731 FvH4_6g40891 FvH4_6g40892
malus_domestica	MD05G1324200.v1.1
rosa_laevigata	RLG00000020915
rosa_multiflora	Rmu_sc0005392.1_g000011
rosa_roxburghii	Rroxscaffold_2G00093010
rosa_rugosa	Rorug02G0453200
rosa_samantha	Rh2AG519600 Rh2BG531900 Rh2CG504600 Rh2DG540800 Rh2DG540900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AciI	CCGC	2 cut(s)	165, 416
AcsI	RAATTY	2 cut(s)	697, 780
AcuI	CTGAAG	4 cut(s)	477, 522, 625, 672
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	164, 352
AgsI	TTSAA	2 cut(s)	91, 491
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	6 cut(s)	358, 443, 455, 536, 545, 639
AluI	AGCT	6 cut(s)	358, 443, 455, 536, 545, 639
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	3 cut(s)	340, 376, 767
AlwNI	CAGNNNCTG	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	3 cut(s)	127, 132, 166
ApaI	GGGCCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	697, 780
AspS9I	GGNCC	4 cut(s)	127, 128, 133, 235
AsuC2I	CCSGG	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	131
BanII	GRGCYC	2 cut(s)	131, 360
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	765
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	380
BciVI	GTATCC	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	3 cut(s)	340, 376, 767
BfaI	CTAG	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	2 cut(s)	57, 166
BlsI	GCNGC	2 cut(s)	58, 167
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	4 cut(s)	127, 128, 133, 235
BmiI	GGNNCC	3 cut(s)	129, 421, 481
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	655
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	296
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
Bpu10I	CCTNAGC	1 cut(s)	765
BpuMI	CCSGG	1 cut(s)	131
BsaI	GGTCTC	2 cut(s)	340, 376
BsaJI	CCNNGG	4 cut(s)	158, 169, 294, 670
BsaXI	ACNNNNNCTCC	4 cut(s)	347, 377, 510, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 352
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	3 cut(s)	71, 319, 618
BseDI	CCNNGG	4 cut(s)	158, 169, 294, 670
BseGI	GGATG	3 cut(s)	399, 520, 602
BseLI	CCNNNNNNNGG	2 cut(s)	164, 352
BseMII	CTCAG	2 cut(s)	110, 779
BseNI	ACTGG	3 cut(s)	71, 319, 618
BseRI	GAGGAG	3 cut(s)	368, 518, 675
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	101
BshFI	GGCC	3 cut(s)	129, 134, 168
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	4 cut(s)	131, 188, 770, 785
BslI	CCNNNNNNNGG	2 cut(s)	164, 352
BsmAI	GTCTC	3 cut(s)	340, 376, 767
BsnI	GGCC	3 cut(s)	129, 134, 168
Bso31I	GGTCTC	2 cut(s)	340, 376
BsoBI	CYCGRG	1 cut(s)	159
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	131, 360
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	644, 691
BspACI	CCGC	2 cut(s)	165, 416
BspANI	GGCC	3 cut(s)	129, 134, 168
BspCNI	CTCAG	2 cut(s)	111, 778
BspLI	GGNNCC	3 cut(s)	129, 421, 481
BspTNI	GGTCTC	2 cut(s)	340, 376
BsrFI	RCCGGY	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	3 cut(s)	71, 319, 618
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	4 cut(s)	158, 169, 294, 670
BssMI	GATC	2 cut(s)	644, 691
BssT1I	CCWWGG	2 cut(s)	294, 670
Bst4CI	ACNGT	3 cut(s)	49, 235, 712
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	2 cut(s)	119, 765
BstF5I	GGATG	3 cut(s)	399, 520, 602
BstKTI	GATC	2 cut(s)	647, 694
BstMAI	GTCTC	3 cut(s)	340, 376, 767
BstMBI	GATC	2 cut(s)	644, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	129, 134, 168
BtsCI	GGATG	3 cut(s)	399, 520, 602
BtsIMutI	CAGTG	4 cut(s)	116, 312, 654, 708
Cac8I	GCNNGC	1 cut(s)	753
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	4 cut(s)	127, 128, 133, 235
Csp6I	GTAC	1 cut(s)	364
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	1 cut(s)	361
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	2 cut(s)	119, 765
DpnI	GATC	2 cut(s)	646, 693
DpnII	GATC	2 cut(s)	644, 691
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	2 cut(s)	294, 670
Eco24I	GRGCYC	2 cut(s)	131, 360
Eco31I	GGTCTC	2 cut(s)	340, 376
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	4 cut(s)	477, 522, 625, 672
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	294, 670
EcoT38I	GRGCYC	2 cut(s)	131, 360
ErhI	CCWWGG	2 cut(s)	294, 670
FaeI	CATG	1 cut(s)	364
FaiI	YATR	9 cut(s)	82, 177, 240, 362, 407, 428, 476, 506, 563
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FatI	CATG	1 cut(s)	360
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	57, 166
FokI	GGATG	3 cut(s)	386, 507, 609
FriOI	GRGCYC	2 cut(s)	131, 360
Fsp4HI	GCNGC	2 cut(s)	57, 166
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	2 cut(s)	57, 166
GsaI	CCCAGC	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	129, 134, 168
HapII	CCGG	4 cut(s)	131, 188, 770, 785
Hin1II	CATG	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	4 cut(s)	15, 280, 491, 775
HpaII	CCGG	4 cut(s)	131, 188, 770, 785
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	3 cut(s)	644, 691, 703
Hpy188III	TCNNGA	3 cut(s)	488, 540, 731
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	650, 696
HpyCH4III	ACNGT	3 cut(s)	49, 235, 712
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	2 cut(s)	119, 765
Hsp92II	CATG	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	644, 691
LmnI	GCTCC	2 cut(s)	355, 542
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	310, 548
MalI	GATC	2 cut(s)	646, 693
MboI	GATC	2 cut(s)	644, 691
MboII	GAAGA	5 cut(s)	301, 470, 486, 558, 643
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	2 cut(s)	131, 360
MluCI	AATT	3 cut(s)	212, 697, 780
MlyI	GAGTC	2 cut(s)	289, 769
MmeI	TCCRAC	1 cut(s)	286
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	2 cut(s)	443, 455
MspI	CCGG	4 cut(s)	131, 188, 770, 785
MspR9I	CCNGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	644, 691
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	3 cut(s)	129, 421, 481
NmuCI	GTSAC	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	15, 491
PkrI	GCNGC	2 cut(s)	58, 167
PleI	GAGTC	2 cut(s)	288, 769
PpsI	GAGTC	2 cut(s)	288, 769
PsiI	TTATAA	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	129, 421, 481
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	4 cut(s)	127, 128, 133, 235
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	691
PvuII	CAGCTG	2 cut(s)	443, 455
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	360
SatI	GCNGC	2 cut(s)	57, 166
Sau3AI	GATC	2 cut(s)	644, 691
Sau96I	GGNCC	4 cut(s)	127, 128, 133, 235
SchI	GAGTC	2 cut(s)	289, 769
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	2 cut(s)	131, 360
SfaNI	GCATC	1 cut(s)	655
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	3 cut(s)	212, 697, 780
SsiI	CCGC	2 cut(s)	165, 416
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	294, 670
TaaI	ACNGT	3 cut(s)	49, 235, 712
TaqI	TCGA	3 cut(s)	384, 516, 732
TaqII	GACCGA	1 cut(s)	310
TasI	AATT	3 cut(s)	212, 697, 780
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	15, 491
TscAI	CASTG	4 cut(s)	123, 319, 654, 715
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	270, 293, 669, 730
TspRI	CASTG	4 cut(s)	123, 319, 654, 715
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	2 cut(s)	697, 780
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.