Rh2BG531900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014632
Physical Location & Seq
Forward (+)
74080484 .. 74082185
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG531900.1

Sequence Viewer

Length: 795 bp
ATGATCCTCGATAATGAGTATAGGTGTCGTGTTGTGCTAATTTATGAATTTCCAGAGAATTCGTTCCGATTCTGCATGGACATCTTTTTCTCTGAGACCGGTGAATGGAGAGAATTTGTTGTATTATGCCCGGAAAGAGCTATTGAATATTGCAGTATCGACATTACTGAGAAAAACTCTTACAATAATAGTGGAGGCCTTGTGTACAATGGAAAGTTGTATTGGTTAGGCGAAGGTGGCATCATGGAGTTGGATCCCTTGGAATTTGACAGTAATACTAGTTATAGTGATCTCATCAATCAGGGGTATTGTCGTTTCATTCAATTTCAAGTTTTCGGAAACCCTATCTTCGAAAAGATTCGCCTAAGTGTATGCCGAGGGTGTATGTGCCTCGTGTGGTTTCGGGATAGTGACTTTGCAATTTGCGAGTTGGAATTAGGAGATGATGATCAGTTGGATGGAGGCAAATGGTGTTTTACACTTACTACACGGCGGTGCATACCTCTTAACCACGATACTGGGAGGCCTTGGCTGCTATCTTTGGACTCATTCAATGAGGATTGCTTCTATGTGATCTCCAAATCTGGATACTTCGGCAAGGGCAACATGAGGACCGGAGTGATAAAGTACAATACAGTGAAGCGATGCCCTGGTCTTGGCTTTCGGGATTCATTTGGAGCCTTCCCATTTGTGCTCCCATGGTGGCCGACACCAGTTCCTAGAATTAAAAATGACCACAAACAACCAGTTCCTAGTGGTATTGACATTCTGTGCAGTTTGTTACTGGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

264

Amino Acids

30.52

Weight (kDa)

4.85

Isoelectric Point (pI)

28.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 493
AclWI GGATC 3 cut(s) 248, 261, 782
AcoI YGGCCR 1 cut(s) 704
AcsI RAATTY 4 cut(s) 47, 58, 113, 263
AfaI GTAC 2 cut(s) 206, 629
AfiI CCNNNNNNNGG 2 cut(s) 105, 656
AgeI ACCGGT 1 cut(s) 98
AgsI TTSAA 4 cut(s) 146, 323, 329, 553
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 649
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AleI CACNNNNGTG 1 cut(s) 493
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 3 cut(s) 248, 261, 782
AoxI GGCC 3 cut(s) 196, 524, 704
ApeKI GCWGC 1 cut(s) 532
ApoI RAATTY 4 cut(s) 47, 58, 113, 263
AsiGI ACCGGT 1 cut(s) 98
Asp700I GAANNNNTTC 2 cut(s) 62, 357
AspS9I GGNCC 1 cut(s) 612
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 351
AvaII GGWCC 1 cut(s) 612
BamHI GGATCC 2 cut(s) 253, 787
BauI CACGAG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 519
BccI CCATC 1 cut(s) 452
BceAI ACGGC 1 cut(s) 506
BciT130I CCWGG 1 cut(s) 651
BciVI GTATCC 1 cut(s) 581
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 89
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 3 cut(s) 279, 720, 753
BfuI GTATCC 1 cut(s) 581
BisI GCNGC 1 cut(s) 533
BlsI GCNGC 1 cut(s) 534
Bme1390I CCNGG 2 cut(s) 131, 651
Bme18I GGWCC 1 cut(s) 612
BmgT120I GGNCC 1 cut(s) 612
BmiI GGNNCC 3 cut(s) 255, 679, 789
BmrFI CCNGG 2 cut(s) 131, 651
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 2 cut(s) 249, 635
BmuI ACTGGG 1 cut(s) 528
BplI GAGNNNNNCTC 2 cut(s) 161, 193
Bpu14I TTCGAA 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 447
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 5 cut(s) 258, 376, 527, 649, 698
BsaWI WCCGGW 2 cut(s) 98, 614
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 656
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 4 cut(s) 523, 713, 746, 789
Bse8I GATNNNNATC 1 cut(s) 447
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 5 cut(s) 258, 376, 527, 649, 698
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 105, 656
BseMII CTCAG 2 cut(s) 84, 159
BseNI ACTGG 4 cut(s) 523, 713, 746, 789
BseXI GCAGC 1 cut(s) 519
BsgI GTGCAG 1 cut(s) 793
BshFI GGCC 3 cut(s) 198, 526, 706
BshTI ACCGGT 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 696
BsiSI CCGG 3 cut(s) 99, 131, 615
BslI CCNNNNNNNGG 2 cut(s) 105, 656
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 3 cut(s) 198, 526, 706
Bso31I GGTCTC 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 696
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 6 cut(s) 3, 253, 289, 448, 573, 787
Bsp19I CCATGG 1 cut(s) 698
BspACI CCGC 1 cut(s) 493
BspANI GGCC 3 cut(s) 198, 526, 706
BspCNI CTCAG 2 cut(s) 85, 160
BspLI GGNNCC 3 cut(s) 255, 679, 789
BspPI GGATC 3 cut(s) 248, 261, 782
BspT104I TTCGAA 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 4 cut(s) 523, 713, 746, 789
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 5 cut(s) 258, 376, 527, 649, 698
BssMI GATC 6 cut(s) 3, 253, 289, 448, 573, 787
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 3 cut(s) 258, 527, 698
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 2 cut(s) 272, 637
BstAUI TGTACA 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 351
BstDEI CTNAG 3 cut(s) 93, 168, 365
BstDSI CCRYGG 1 cut(s) 698
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 6 cut(s) 6, 256, 292, 451, 576, 790
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 6 cut(s) 3, 253, 289, 448, 573, 787
BstMWI GCNNNNNNNGC 2 cut(s) 237, 532
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 2 cut(s) 129, 649
BstV1I GCAGC 1 cut(s) 519
BstX2I RGATCY 2 cut(s) 253, 787
BstXI CCANNNNNNTGG 1 cut(s) 518
BstYI RGATCY 2 cut(s) 253, 787
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 3 cut(s) 198, 526, 706
BtgI CCRYGG 1 cut(s) 698
BtgZI GCGATG 1 cut(s) 658
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 642
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 612
Csp6I GTAC 2 cut(s) 205, 628
CspAI ACCGGT 1 cut(s) 98
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 4 cut(s) 76, 244, 607, 699
CviJI RGCY 7 cut(s) 140, 198, 526, 532, 660, 680, 706
CviKI_1 RGCY 7 cut(s) 140, 198, 526, 532, 660, 680, 706
CviQI GTAC 2 cut(s) 205, 628
DdeI CTNAG 3 cut(s) 93, 168, 365
DpnI GATC 6 cut(s) 5, 255, 291, 450, 575, 789
DpnII GATC 6 cut(s) 3, 253, 289, 448, 573, 787
EaeI YGGCCR 1 cut(s) 704
Eco130I CCWWGG 3 cut(s) 258, 527, 698
Eco147I AGGCCT 2 cut(s) 198, 526
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 649
EcoT14I CCWWGG 3 cut(s) 258, 527, 698
ErhI CCWWGG 3 cut(s) 258, 527, 698
FaeI CATG 4 cut(s) 79, 247, 610, 702
FatI CATG 4 cut(s) 75, 243, 606, 698
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 533
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 533
FspBI CTAG 3 cut(s) 279, 720, 753
GluI GCNGC 1 cut(s) 533
HaeIII GGCC 3 cut(s) 198, 526, 706
HapII CCGG 3 cut(s) 99, 131, 615
Hin1II CATG 4 cut(s) 79, 247, 610, 702
HinfI GANTC 4 cut(s) 69, 358, 545, 668
HpaII CCGG 3 cut(s) 99, 131, 615
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 3 cut(s) 68, 94, 338
Hpy188III TCNNGA 4 cut(s) 53, 404, 585, 665
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 227, 691
HpyCH4III ACNGT 2 cut(s) 272, 637
HpyCH4V TGCA 5 cut(s) 75, 153, 419, 498, 774
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 532
HpyF3I CTNAG 3 cut(s) 93, 168, 365
Hsp92II CATG 4 cut(s) 79, 247, 610, 702
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 6 cut(s) 3, 253, 289, 448, 573, 787
LmnI GCTCC 2 cut(s) 677, 699
Lsp1109I GCAGC 1 cut(s) 519
LweI GCATC 2 cut(s) 249, 635
MaeI CTAG 3 cut(s) 279, 720, 753
MaeIII GTNAC 2 cut(s) 410, 780
MalI GATC 6 cut(s) 5, 255, 291, 450, 575, 789
MboI GATC 6 cut(s) 3, 253, 289, 448, 573, 787
MboII GAAGA 1 cut(s) 340
MflI RGATCY 2 cut(s) 253, 787
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 9 cut(s) 39, 47, 58, 113, 263, 323, 420, 434, 723
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 3 cut(s) 231, 411, 435
MnlI CCTC 9 cut(s) 17, 188, 371, 401, 455, 513, 516, 550, 603
MroXI GAANNNNTTC 2 cut(s) 62, 357
MseI TTAA 2 cut(s) 507, 726
MslI CAYNNNNRTG 1 cut(s) 493
MspI CCGG 3 cut(s) 99, 131, 615
MspR9I CCNGG 2 cut(s) 131, 651
MvaI CCWGG 1 cut(s) 651
MwoI GCNNNNNNNGC 2 cut(s) 237, 532
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 698
NdeII GATC 6 cut(s) 3, 253, 289, 448, 573, 787
NlaIII CATG 4 cut(s) 79, 247, 610, 702
NlaIV GGNNCC 3 cut(s) 255, 679, 789
NmeAIII GCCGAG 1 cut(s) 401
NmuCI GTSAC 1 cut(s) 410
NspV TTCGAA 1 cut(s) 351
OliI CACNNNNGTG 1 cut(s) 493
PceI AGGCCT 2 cut(s) 198, 526
PdmI GAANNNNTTC 2 cut(s) 62, 357
PfeI GAWTC 3 cut(s) 69, 358, 668
PinAI ACCGGT 1 cut(s) 98
PkrI GCNGC 1 cut(s) 534
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 649
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 3 cut(s) 255, 679, 789
PspPI GGNCC 1 cut(s) 612
PsuI RGATCY 2 cut(s) 253, 787
RsaI GTAC 2 cut(s) 206, 629
RsaNI GTAC 2 cut(s) 205, 628
RseI CAYNNNNRTG 1 cut(s) 493
SaqAI TTAA 2 cut(s) 507, 726
SatI GCNGC 1 cut(s) 533
Sau3AI GATC 6 cut(s) 3, 253, 289, 448, 573, 787
Sau96I GGNCC 1 cut(s) 612
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 2 cut(s) 131, 651
SduI GDGCHC 1 cut(s) 696
SetI ASST 4 cut(s) 26, 142, 238, 505
SfaNI GCATC 2 cut(s) 249, 635
SfuI TTCGAA 1 cut(s) 351
SinI GGWCC 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 493
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 9 cut(s) 39, 47, 58, 113, 263, 323, 420, 434, 723
SseBI AGGCCT 2 cut(s) 198, 526
SsiI CCGC 1 cut(s) 493
SspI AATATT 1 cut(s) 149
SspMI CTAG 3 cut(s) 279, 720, 753
StuI AGGCCT 2 cut(s) 198, 526
StyD4I CCNGG 2 cut(s) 129, 649
StyI CCWWGG 3 cut(s) 258, 527, 698
TaaI ACNGT 2 cut(s) 272, 637
TaqI TCGA 3 cut(s) 9, 159, 351
TasI AATT 9 cut(s) 39, 47, 58, 113, 263, 323, 420, 434, 723
TatI WGTACW 2 cut(s) 204, 627
TfiI GAWTC 3 cut(s) 69, 358, 668
Tru1I TTAA 2 cut(s) 507, 726
Tru9I TTAA 2 cut(s) 507, 726
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 60, 307, 660
TspRI CASTG 1 cut(s) 642
VpaK11BI GGWCC 1 cut(s) 612
XapI RAATTY 4 cut(s) 47, 58, 113, 263
XmnI GAANNNNTTC 2 cut(s) 62, 357
XspI CTAG 3 cut(s) 279, 720, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.