Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014632

Physical Location & Seq

Genomic Coordinates Forward (+)

74703325 .. 74704635

Gene Structure 1311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG519600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGAGATCAGGTAAAAGACTACCGTCAAGATCAACAAAGGTCAACAAACTTCCTCATCTCCCTGAAGAAATAATACTTGAAATCCTTGTTCTACTCCCTAGTAACTCTGTTGTTCGGAGCAAGTGTTTGTCCAAGCGTTGGTACACTCTCATCTCGGACCCTAAGTTTGTCACTCGTTTTTTATGCCTCCAAAGTGAAATGAATACCCCCCTTGAAAGTGGTGTGATTTTCACAGACTATGACTGTGAAAAATACTATTCTTTTACCATAATGTCCGAGCTTCCGAAATCTTTGAAACACAAGTTGGGAAGGAAAGGGTGCTGCACGGTACTGGCGACGTACAATGACCTAGTTTTGTGCTTTCCGGATAACTACTACAACATTTGCAATCTACATACCACGCAACGGGTTGCTCTTCCTCCCACCCTTCCCCACCACGACGACCTTGACATTGCAGAAGTGGGATTTATCTGTGAACCCTATTATAAAGAACAAAATGATACTACTAGTAGAACTATGATCCTCGATAATGAGTATAGGTGTCGTGTTGTGCTAATTTATGAATTTCCAGAGAATTCGTTCCGATTCTGCATGGACATCTTTTTCTCTGAGACCGGTGAATGGAGAGAATTTGCTGTATTATGCCCGGAAAGAGCTATTGAATATTGCAGTATCGACATTACTGAGAAAAACTCTTACAATAATAGTGGAGGCCTTGTGTATAATGGAAAGTTGTATTGGTTAGGCGAAGGTGGCATCATGGAGTTGGATCCCTTGGCATTTGACAGTAATACTAGTTATAGTGATCTCATCAATCAGGGGTATTGTCGTTTCATTCAATTTCAAGTTTTCGGAAACCCTATCTTCGAAAAGATTCGCCTAAGTGTATGCCGAGGGTGTATGTGCCTCGTGTGGTTTAGGGATAGTGACTTTGAGATTTGCGAGTTGGAATTAGGAGATGATGATCAGTTGGATGGAGGCAAATGGTATTTTACACTTACTACACGGCGGTGCATACCTCTCAACCACGATACTGGGAGGCCTTGGCTGCTATCTTTGGACTCATTCAATGAGGATTGCTTCTATGTGATCTCCAAATCTGGATACTTCGGCAAGGGCAACATGAGGACCGGAGTGATAAAGTACAATACAGTGAAGCGATGCCCTGGTCTTGGCTTTCGGGATTCATTTGGAGCCTTCCCATTTGTGCTCCCATGGTGGCCGACACCAGTTCCTAGAATTAAAAATGACCACAAACAACCAGTTCCTAGTGGTATTGACATTCTGTGCAGTTTGTTACTGGATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

436

Amino Acids

50.36

Weight (kDa)

5.64

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	17 - 56	1.2e-07	F-box domain
F-box-like	PF12937	18 - 62	3.5e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06511 FvH4_3g36980 FvH4_4g08883 FvH4_6g17112 FvH4_6g38731 FvH4_6g40891 FvH4_6g40892
malus_domestica	MD05G1324200.v1.1
rosa_laevigata	RLG00000020915
rosa_multiflora	Rmu_sc0005392.1_g000011
rosa_roxburghii	Rroxscaffold_2G00093010
rosa_rugosa	Rorug02G0453200
rosa_samantha	Rh2AG519600 Rh2BG531900 Rh2CG504600 Rh2DG540800 Rh2DG540900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AccB7I	CCANNNNNTGG	1 cut(s)	138
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	1 cut(s)	1009
AclWI	GGATC	4 cut(s)	514, 764, 777, 1298
AcoI	YGGCCR	1 cut(s)	1220
AcsI	RAATTY	3 cut(s)	563, 574, 629
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	4 cut(s)	143, 330, 341, 1145
AfiI	CCNNNNNNNGG	4 cut(s)	138, 405, 621, 1172
AgeI	ACCGGT	1 cut(s)	614
AgsI	TTSAA	7 cut(s)	80, 215, 295, 662, 839, 845, 1069
AhlI	ACTAGT	2 cut(s)	506, 794
AjnI	CCWGG	1 cut(s)	1165
AjuI	GAANNNNNNNTTGG	4 cut(s)	287, 319, 721, 753
AleI	CACNNNNGTG	1 cut(s)	1009
AluBI	AGCT	2 cut(s)	280, 656
AluI	AGCT	2 cut(s)	280, 656
Alw21I	GWGCWC	1 cut(s)	1212
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	4 cut(s)	514, 764, 777, 1298
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	3 cut(s)	712, 1040, 1220
ApeKI	GCWGC	2 cut(s)	321, 1048
ApoI	RAATTY	3 cut(s)	563, 574, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AsiGI	ACCGGT	1 cut(s)	614
Asp700I	GAANNNNTTC	2 cut(s)	578, 873
AspS9I	GGNCC	2 cut(s)	157, 1128
AsuC2I	CCSGG	1 cut(s)	647
AsuHPI	GGTGA	1 cut(s)	629
AsuII	TTCGAA	1 cut(s)	867
AvaII	GGWCC	2 cut(s)	157, 1128
BamHI	GGATCC	2 cut(s)	769, 1303
BarI	GAAGNNNNNNTAC	2 cut(s)	57, 89
BauI	CACGAG	1 cut(s)	908
Bbv12I	GWGCWC	1 cut(s)	1212
BbvI	GCAGC	2 cut(s)	308, 1035
BccI	CCATC	1 cut(s)	968
BceAI	ACGGC	1 cut(s)	1022
BciT130I	CCWGG	1 cut(s)	1167
BciVI	GTATCC	1 cut(s)	1097
BclI	TGATCA	1 cut(s)	964
BcnI	CCSGG	1 cut(s)	647
BcoDI	GTCTC	1 cut(s)	605
BcuI	ACTAGT	2 cut(s)	506, 794
BfaI	CTAG	6 cut(s)	99, 350, 507, 795, 1236, 1269
BfuI	GTATCC	1 cut(s)	1097
BisI	GCNGC	2 cut(s)	322, 1049
BlsI	GCNGC	2 cut(s)	323, 1050
Bme1390I	CCNGG	2 cut(s)	647, 1167
Bme18I	GGWCC	2 cut(s)	157, 1128
BmgT120I	GGNCC	2 cut(s)	157, 1128
BmiI	GGNNCC	4 cut(s)	159, 771, 1195, 1305
BmrFI	CCNGG	2 cut(s)	647, 1167
BmrI	ACTGGG	1 cut(s)	1044
BmsI	GCATC	2 cut(s)	765, 1151
BmuI	ACTGGG	1 cut(s)	1044
BoxI	GACNNNNGTC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	677, 709
Bpu14I	TTCGAA	1 cut(s)	867
BpuMI	CCSGG	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	963
BsaI	GGTCTC	1 cut(s)	605
BsaJI	CCNNGG	5 cut(s)	774, 892, 1043, 1165, 1214
BsaWI	WCCGGW	3 cut(s)	364, 614, 1130
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 702, 732
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 405, 621, 1172
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	5 cut(s)	336, 1039, 1229, 1262, 1305
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	963
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	1167
BseDI	CCNNGG	5 cut(s)	774, 892, 1043, 1165, 1214
BseGI	GGATG	1 cut(s)	979
BseJI	GATNNNNATC	1 cut(s)	963
BseLI	CCNNNNNNNGG	4 cut(s)	138, 405, 621, 1172
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	600, 675
BseNI	ACTGG	5 cut(s)	336, 1039, 1229, 1262, 1305
BseXI	GCAGC	2 cut(s)	308, 1035
BsgI	GTGCAG	2 cut(s)	307, 1309
BshFI	GGCC	3 cut(s)	714, 1042, 1222
BshTI	ACCGGT	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	1212
BsiSI	CCGG	4 cut(s)	365, 615, 647, 1131
BslI	CCNNNNNNNGG	4 cut(s)	138, 405, 621, 1172
BsmAI	GTCTC	1 cut(s)	605
BsnI	GGCC	3 cut(s)	714, 1042, 1222
Bso31I	GGTCTC	1 cut(s)	605
Bsp119I	TTCGAA	1 cut(s)	867
Bsp1286I	GDGCHC	1 cut(s)	1212
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	8 cut(s)	5, 29, 519, 769, 805, 964, 1089, 1303
Bsp19I	CCATGG	1 cut(s)	1214
BspACI	CCGC	1 cut(s)	1009
BspANI	GGCC	3 cut(s)	714, 1042, 1222
BspCNI	CTCAG	2 cut(s)	601, 676
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	4 cut(s)	159, 771, 1195, 1305
BspPI	GGATC	4 cut(s)	514, 764, 777, 1298
BspQI	GCTCTTC	1 cut(s)	420
BspT104I	TTCGAA	1 cut(s)	867
BspTNI	GGTCTC	1 cut(s)	605
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	5 cut(s)	336, 1039, 1229, 1262, 1305
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	5 cut(s)	774, 892, 1043, 1165, 1214
BssMI	GATC	8 cut(s)	5, 29, 519, 769, 805, 964, 1089, 1303
BssSI	CACGAG	1 cut(s)	908
BssT1I	CCWWGG	3 cut(s)	774, 1043, 1214
Bst2BI	CACGAG	1 cut(s)	908
Bst2UI	CCWGG	1 cut(s)	1167
Bst4CI	ACNGT	5 cut(s)	24, 245, 328, 788, 1153
Bst6I	CTCTTC	1 cut(s)	420
BstBI	TTCGAA	1 cut(s)	867
BstDEI	CTNAG	4 cut(s)	162, 609, 684, 881
BstDSI	CCRYGG	1 cut(s)	1214
BstF5I	GGATG	1 cut(s)	979
BstKTI	GATC	8 cut(s)	8, 32, 522, 772, 808, 967, 1092, 1306
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	8 cut(s)	5, 29, 519, 769, 805, 964, 1089, 1303
BstMWI	GCNNNNNNNGC	2 cut(s)	753, 1048
BstNI	CCWGG	1 cut(s)	1167
BstPAI	GACNNNNGTC	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	645, 1165
BstV1I	GCAGC	2 cut(s)	308, 1035
BstX2I	RGATCY	2 cut(s)	769, 1303
BstXI	CCANNNNNNTGG	1 cut(s)	1034
BstYI	RGATCY	2 cut(s)	769, 1303
BsuI	GTATCC	1 cut(s)	1097
BsuRI	GGCC	3 cut(s)	714, 1042, 1222
BtgI	CCRYGG	1 cut(s)	1214
BtgZI	GCGATG	1 cut(s)	1174
BtsCI	GGATG	1 cut(s)	979
BtsIMutI	CAGTG	1 cut(s)	1158
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	157, 1128
Csp6I	GTAC	4 cut(s)	142, 329, 340, 1144
CspAI	ACCGGT	1 cut(s)	614
CspCI	CAANNNNNGTGG	2 cut(s)	688, 723
CviAII	CATG	4 cut(s)	592, 760, 1123, 1215
CviJI	RGCY	8 cut(s)	280, 656, 714, 1042, 1048, 1176, 1196, 1222
CviKI_1	RGCY	8 cut(s)	280, 656, 714, 1042, 1048, 1176, 1196, 1222
CviQI	GTAC	4 cut(s)	142, 329, 340, 1144
DdeI	CTNAG	4 cut(s)	162, 609, 684, 881
DpnI	GATC	8 cut(s)	7, 31, 521, 771, 807, 966, 1091, 1305
DpnII	GATC	8 cut(s)	5, 29, 519, 769, 805, 964, 1089, 1303
EaeI	YGGCCR	1 cut(s)	1220
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	3 cut(s)	774, 1043, 1214
Eco147I	AGGCCT	2 cut(s)	714, 1042
Eco31I	GGTCTC	1 cut(s)	605
Eco47I	GGWCC	2 cut(s)	157, 1128
Eco57I	CTGAAG	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	1165
EcoT14I	CCWWGG	3 cut(s)	774, 1043, 1214
ErhI	CCWWGG	3 cut(s)	774, 1043, 1214
FaeI	CATG	4 cut(s)	595, 763, 1126, 1218
FatI	CATG	4 cut(s)	591, 759, 1122, 1214
FbaI	TGATCA	1 cut(s)	964
Fnu4HI	GCNGC	2 cut(s)	322, 1049
FokI	GGATG	1 cut(s)	986
Fsp4HI	GCNGC	2 cut(s)	322, 1049
FspBI	CTAG	6 cut(s)	99, 350, 507, 795, 1236, 1269
GluI	GCNGC	2 cut(s)	322, 1049
HaeIII	GGCC	3 cut(s)	714, 1042, 1222
HapII	CCGG	4 cut(s)	365, 615, 647, 1131
Hin1II	CATG	4 cut(s)	595, 763, 1126, 1218
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	4 cut(s)	585, 874, 1061, 1184
HpaII	CCGG	4 cut(s)	365, 615, 647, 1131
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	3 cut(s)	43, 144, 476
Hpy188I	TCNGA	7 cut(s)	117, 157, 277, 285, 584, 610, 854
Hpy188III	TCNNGA	5 cut(s)	27, 365, 569, 1101, 1181
Hpy8I	GTNNAC	3 cut(s)	43, 144, 476
Hpy99I	CGWCG	2 cut(s)	340, 443
HpyAV	CCTTC	4 cut(s)	303, 437, 743, 1207
HpyCH4III	ACNGT	5 cut(s)	24, 245, 328, 788, 1153
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	7 cut(s)	324, 387, 455, 591, 669, 1014, 1290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	753, 1048
HpyF3I	CTNAG	4 cut(s)	162, 609, 684, 881
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	4 cut(s)	595, 763, 1126, 1218
Kpn2I	TCCGGA	1 cut(s)	364
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	8 cut(s)	5, 29, 519, 769, 805, 964, 1089, 1303
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	3 cut(s)	117, 1193, 1215
Lsp1109I	GCAGC	2 cut(s)	308, 1035
LweI	GCATC	2 cut(s)	765, 1151
MaeI	CTAG	6 cut(s)	99, 350, 507, 795, 1236, 1269
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	4 cut(s)	101, 169, 926, 1296
MalI	GATC	8 cut(s)	7, 31, 521, 771, 807, 966, 1091, 1305
MboI	GATC	8 cut(s)	5, 29, 519, 769, 805, 964, 1089, 1303
MboII	GAAGA	3 cut(s)	77, 407, 856
MflI	RGATCY	2 cut(s)	769, 1303
MhlI	GDGCHC	1 cut(s)	1212
MluCI	AATT	7 cut(s)	555, 563, 574, 629, 839, 950, 1239
MlyI	GAGTC	1 cut(s)	1055
MmeI	TCCRAC	3 cut(s)	747, 927, 951
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	2 cut(s)	578, 873
MseI	TTAA	1 cut(s)	1242
MslI	CAYNNNNRTG	1 cut(s)	1009
MspI	CCGG	4 cut(s)	365, 615, 647, 1131
MspR9I	CCNGG	2 cut(s)	647, 1167
MvaI	CCWGG	1 cut(s)	1167
MwoI	GCNNNNNNNGC	2 cut(s)	753, 1048
NciI	CCSGG	1 cut(s)	647
NcoI	CCATGG	1 cut(s)	1214
NdeII	GATC	8 cut(s)	5, 29, 519, 769, 805, 964, 1089, 1303
NlaIII	CATG	4 cut(s)	595, 763, 1126, 1218
NlaIV	GGNNCC	4 cut(s)	159, 771, 1195, 1305
NmeAIII	GCCGAG	1 cut(s)	917
NmuCI	GTSAC	2 cut(s)	169, 926
NspV	TTCGAA	1 cut(s)	867
OliI	CACNNNNGTG	1 cut(s)	1009
PceI	AGGCCT	2 cut(s)	714, 1042
PciSI	GCTCTTC	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PdmI	GAANNNNTTC	2 cut(s)	578, 873
PfeI	GAWTC	3 cut(s)	585, 874, 1184
PflMI	CCANNNNNTGG	1 cut(s)	138
PinAI	ACCGGT	1 cut(s)	614
PkrI	GCNGC	2 cut(s)	323, 1050
PleI	GAGTC	1 cut(s)	1055
PpsI	GAGTC	1 cut(s)	1055
PshAI	GACNNNNGTC	1 cut(s)	22
PsiI	TTATAA	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	1165
PspGI	CCWGG	1 cut(s)	1165
PspN4I	GGNNCC	4 cut(s)	159, 771, 1195, 1305
PspPI	GGNCC	2 cut(s)	157, 1128
PsuI	RGATCY	2 cut(s)	769, 1303
RsaI	GTAC	4 cut(s)	143, 330, 341, 1145
RsaNI	GTAC	4 cut(s)	142, 329, 340, 1144
RseI	CAYNNNNRTG	1 cut(s)	1009
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	1242
SatI	GCNGC	2 cut(s)	322, 1049
Sau3AI	GATC	8 cut(s)	5, 29, 519, 769, 805, 964, 1089, 1303
Sau96I	GGNCC	2 cut(s)	157, 1128
SchI	GAGTC	1 cut(s)	1055
ScrFI	CCNGG	2 cut(s)	647, 1167
SduI	GDGCHC	1 cut(s)	1212
SfaNI	GCATC	2 cut(s)	765, 1151
SfuI	TTCGAA	1 cut(s)	867
SinI	GGWCC	2 cut(s)	157, 1128
SmiMI	CAYNNNNRTG	1 cut(s)	1009
SpeI	ACTAGT	2 cut(s)	506, 794
Sse9I	AATT	7 cut(s)	555, 563, 574, 629, 839, 950, 1239
SseBI	AGGCCT	2 cut(s)	714, 1042
SsiI	CCGC	1 cut(s)	1009
SspI	AATATT	1 cut(s)	665
SspMI	CTAG	6 cut(s)	99, 350, 507, 795, 1236, 1269
StuI	AGGCCT	2 cut(s)	714, 1042
StyD4I	CCNGG	2 cut(s)	645, 1165
StyI	CCWWGG	3 cut(s)	774, 1043, 1214
TaaI	ACNGT	5 cut(s)	24, 245, 328, 788, 1153
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	525, 675, 867
TasI	AATT	7 cut(s)	555, 563, 574, 629, 839, 950, 1239
TatI	WGTACW	1 cut(s)	1143
TfiI	GAWTC	3 cut(s)	585, 874, 1184
Tru1I	TTAA	1 cut(s)	1242
Tru9I	TTAA	1 cut(s)	1242
TscAI	CASTG	1 cut(s)	1158
TseFI	GTSAC	2 cut(s)	169, 926
TseI	GCWGC	2 cut(s)	321, 1048
Tsp45I	GTSAC	2 cut(s)	169, 926
TspDTI	ATGAA	4 cut(s)	215, 576, 823, 1176
TspRI	CASTG	1 cut(s)	1158
Van91I	CCANNNNNTGG	1 cut(s)	138
VpaK11BI	GGWCC	2 cut(s)	157, 1128
XapI	RAATTY	3 cut(s)	563, 574, 629
XmnI	GAANNNNTTC	2 cut(s)	578, 873
XspI	CTAG	6 cut(s)	99, 350, 507, 795, 1236, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.