Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014632

Physical Location & Seq

Genomic Coordinates Forward (+)

32309597 .. 32311060

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40891.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAGAGGTAAAAGAGTAAAAAGACTACCATCACGATCAACAGAGGACGTCATCAAACTTCCTGATCTCCCTGAAGAAATAATAATCGAAATCCTTGTTCGTCTCCCTCGCAACTCAGTTGCTCAGAGCAAGTGTTTGTCCAAGCGTTGGTACACTGTCACCTCGAACCCTGATTTCCTCGCTCGTTTTCTAAGCCTCCAAAGTGAAATAAAAACCCCTCTTGATAGTGGCATGATTTTCACAGACTATAACCCACAAAGATATTATTCGTTTACCGCAATGTCCGAGCTTCCAAAATCTGTCAAACACAGATTGGGAAAGAGAGGGTCTTGCACAGTTCTGGCTACATACAATGACCTAGTTTTGTACTTACCGGATAATTACTACAACATTTGCAATCTACATACCATGCAATGTGTTGCTCTTCCTCCAACTCTTCCTCACCACGACAACCTTGAGATTGCAGAAGCGGGATTTATCTGTGAACCCTACTACAAAGAACAAAATGATAGTACTAGTAGAACTTTCATCCTCAATGATGAGTATAAGTGCCGTGTTGTGCTCATTTATGAATTTACGAGTTCTACGATCCAAATCTGCATGGACATCTTTTTCTCTGAGACTGGTGAATGGAGAGAGTTTGTTGTATCCTGCCCCGTAACCGCAAGAGCTAGGTACTATTGCAGTATTGACAATGGTGCTGCGAAACGTTCATACAATTATAGTGGAGGCCTTGCCTACAATGGAAAGTTGTATTGGTTAGGTGAAGGCGGCATCATGGAGTTGGATCCCTTGGCATGTGACAGTGATAGAAATCTCATCGATCGGTGTTGTCGTTTCATTGAATTTCAAGTACTCTCCGGAAACCCTACGTTGGGGAGGAAATACCTAGGTGTATGCCGAGGGAGTATGTGCCTCATGTCGTGTCTTGGTAGAAACAAGTTTGAAATCTACAAGTTGGAATCAGGAAATGATGATCAGTTGGACGAAGGCAGATGGTGTTTTACACTTGCTACACAGTGGTGCTTGCCTCTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

347

Amino Acids

39.74

Weight (kDa)

6.86

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	20 - 60	2.6e-07	F-box domain
F-box-like	PF12937	21 - 64	2.3e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06511 FvH4_3g36980 FvH4_4g08883 FvH4_6g17112 FvH4_6g38731 FvH4_6g40891 FvH4_6g40892
malus_domestica	MD05G1324200.v1.1
rosa_laevigata	RLG00000020915
rosa_multiflora	Rmu_sc0005392.1_g000011
rosa_roxburghii	Rroxscaffold_2G00093010
rosa_rugosa	Rorug02G0453200
rosa_samantha	Rh2AG519600 Rh2BG531900 Rh2CG504600 Rh2DG540800 Rh2DG540900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	860
AciI	CCGC	4 cut(s)	276, 470, 663, 771
AclI	AACGTT	1 cut(s)	709
AclWI	GGATC	3 cut(s)	583, 782, 795
AcsI	RAATTY	2 cut(s)	572, 845
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	5 cut(s)	152, 368, 514, 677, 855
AfiI	CCNNNNNNNGG	3 cut(s)	147, 874, 875
AgsI	TTSAA	3 cut(s)	845, 851, 947
AhlI	ACTAGT	1 cut(s)	515
AjuI	GAANNNNNNNTTGG	2 cut(s)	739, 771
AleI	CACNNNNGTG	1 cut(s)	1021
AluBI	AGCT	2 cut(s)	289, 671
AluI	AGCT	2 cut(s)	289, 671
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	2 cut(s)	107, 614
AlwI	GGATC	3 cut(s)	583, 782, 795
Aor13HI	TCCGGA	1 cut(s)	860
AoxI	GGCC	1 cut(s)	730
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	2 cut(s)	572, 845
AspA2I	CCTAGG	1 cut(s)	889
AsuHPI	GGTGA	4 cut(s)	151, 434, 638, 776
AvrII	CCTAGG	1 cut(s)	889
BamHI	GGATCC	1 cut(s)	787
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	2 cut(s)	37, 990
BceAI	ACGGC	1 cut(s)	537
BciVI	GTATCC	1 cut(s)	658
BclI	TGATCA	1 cut(s)	976
BcoDI	GTCTC	2 cut(s)	107, 614
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	4 cut(s)	359, 516, 672, 890
BfuI	GTATCC	1 cut(s)	658
BisI	GCNGC	2 cut(s)	702, 772
BlnI	CCTAGG	1 cut(s)	889
BlsI	GCNGC	2 cut(s)	703, 773
BmcAI	AGTACT	2 cut(s)	514, 855
BmiI	GGNNCC	1 cut(s)	789
BmsI	GCATC	1 cut(s)	783
BpuEI	CTTGAG	1 cut(s)	476
Bsa29I	ATCGAT	1 cut(s)	822
BsaBI	GATNNNNATC	2 cut(s)	593, 813
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	792, 889, 901
BsaWI	WCCGGW	2 cut(s)	373, 860
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 874, 875
Bse1I	ACTGG	1 cut(s)	628
Bse3DI	GCAATG	2 cut(s)	285, 419
Bse8I	GATNNNNATC	2 cut(s)	593, 813
BseAI	TCCGGA	1 cut(s)	860
BseCI	ATCGAT	1 cut(s)	822
BseDI	CCNNGG	3 cut(s)	792, 889, 901
BseGI	GGATG	1 cut(s)	528
BseJI	GATNNNNATC	2 cut(s)	593, 813
BseLI	CCNNNNNNNGG	3 cut(s)	147, 874, 875
BseMI	GCAATG	2 cut(s)	285, 419
BseMII	CTCAG	3 cut(s)	129, 137, 609
BseNI	ACTGG	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	688
Bsh1285I	CGRYCG	1 cut(s)	826
BshFI	GGCC	1 cut(s)	732
BshVI	ATCGAT	1 cut(s)	822
BsiEI	CGRYCG	1 cut(s)	826
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	2 cut(s)	374, 861
BslI	CCNNNNNNNGG	3 cut(s)	147, 874, 875
BsmAI	GTCTC	2 cut(s)	107, 614
BsmBI	CGTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	732
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp13I	TCCGGA	1 cut(s)	860
Bsp143I	GATC	6 cut(s)	35, 64, 588, 787, 823, 976
BspACI	CCGC	4 cut(s)	276, 470, 663, 771
BspANI	GGCC	1 cut(s)	732
BspCNI	CTCAG	3 cut(s)	128, 136, 610
BspDI	ATCGAT	1 cut(s)	822
BspEI	TCCGGA	1 cut(s)	860
BspLI	GGNNCC	1 cut(s)	789
BspPI	GGATC	3 cut(s)	583, 782, 795
BspQI	GCTCTTC	1 cut(s)	429
BsrDI	GCAATG	2 cut(s)	285, 419
BsrI	ACTGG	1 cut(s)	628
BssECI	CCNNGG	3 cut(s)	792, 889, 901
BssMI	GATC	6 cut(s)	35, 64, 588, 787, 823, 976
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	2 cut(s)	792, 889
Bst4CI	ACNGT	4 cut(s)	157, 337, 806, 1020
Bst6I	CTCTTC	2 cut(s)	429, 441
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	1028
BstDEI	CTNAG	4 cut(s)	115, 123, 191, 618
BstF5I	GGATG	1 cut(s)	528
BstKTI	GATC	6 cut(s)	38, 67, 591, 790, 826, 979
BstMAI	GTCTC	2 cut(s)	107, 614
BstMBI	GATC	6 cut(s)	35, 64, 588, 787, 823, 976
BstMCI	CGRYCG	1 cut(s)	826
BstNSI	RCATGY	1 cut(s)	801
BstV1I	GCAGC	1 cut(s)	688
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
Bsu15I	ATCGAT	1 cut(s)	822
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	732
BsuTUI	ATCGAT	1 cut(s)	822
BtsCI	GGATG	1 cut(s)	528
BtsIMutI	CAGTG	3 cut(s)	153, 811, 1025
Cac8I	GCNNGC	1 cut(s)	1028
ClaI	ATCGAT	1 cut(s)	822
Csp6I	GTAC	5 cut(s)	151, 367, 513, 676, 854
CspCI	CAANNNNNGTGG	2 cut(s)	706, 741
CviAII	CATG	6 cut(s)	232, 409, 601, 778, 798, 919
CviJI	RGCY	5 cut(s)	195, 289, 344, 671, 732
CviKI_1	RGCY	5 cut(s)	195, 289, 344, 671, 732
CviQI	GTAC	5 cut(s)	151, 367, 513, 676, 854
DdeI	CTNAG	4 cut(s)	115, 123, 191, 618
DpnI	GATC	6 cut(s)	37, 66, 590, 789, 825, 978
DpnII	GATC	6 cut(s)	35, 64, 588, 787, 823, 976
Eam1104I	CTCTTC	2 cut(s)	429, 441
EarI	CTCTTC	2 cut(s)	429, 441
Eco130I	CCWWGG	2 cut(s)	792, 889
Eco147I	AGGCCT	1 cut(s)	732
Eco57I	CTGAAG	1 cut(s)	93
EcoT14I	CCWWGG	2 cut(s)	792, 889
ErhI	CCWWGG	2 cut(s)	792, 889
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	6 cut(s)	235, 412, 604, 781, 801, 922
FatI	CATG	6 cut(s)	231, 408, 600, 777, 797, 918
FauI	CCCGC	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	976
Fnu4HI	GCNGC	2 cut(s)	702, 772
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	2 cut(s)	702, 772
FspBI	CTAG	4 cut(s)	359, 516, 672, 890
GluI	GCNGC	2 cut(s)	702, 772
HaeIII	GGCC	1 cut(s)	732
HapII	CCGG	2 cut(s)	374, 861
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	6 cut(s)	235, 412, 604, 781, 801, 922
HinfI	GANTC	1 cut(s)	962
HpaII	CCGG	2 cut(s)	374, 861
HphI	GGTGA	4 cut(s)	151, 434, 638, 776
Hpy166II	GTNNAC	3 cut(s)	153, 273, 485
Hpy188I	TCNGA	3 cut(s)	126, 286, 619
Hpy188III	TCNNGA	5 cut(s)	33, 62, 221, 861, 966
Hpy8I	GTNNAC	3 cut(s)	153, 273, 485
HpyAV	CCTTC	2 cut(s)	761, 983
HpyCH4III	ACNGT	4 cut(s)	157, 337, 806, 1020
HpyCH4IV	ACGT	3 cut(s)	48, 709, 872
HpyCH4V	TGCA	6 cut(s)	333, 396, 412, 464, 600, 684
HpyF3I	CTNAG	4 cut(s)	115, 123, 191, 618
HpySE526I	ACGT	3 cut(s)	48, 709, 872
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	6 cut(s)	235, 412, 604, 781, 801, 922
Kpn2I	TCCGGA	1 cut(s)	860
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	6 cut(s)	35, 64, 588, 787, 823, 976
LguI	GCTCTTC	1 cut(s)	429
LpnPI	CCDG	9 cut(s)	75, 84, 183, 326, 387, 609, 664, 874, 951
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	4 cut(s)	359, 516, 672, 890
MaeII	ACGT	3 cut(s)	48, 709, 872
MaeIII	GTNAC	3 cut(s)	157, 658, 800
MalI	GATC	6 cut(s)	37, 66, 590, 789, 825, 978
MboI	GATC	6 cut(s)	35, 64, 588, 787, 823, 976
MboII	GAAGA	3 cut(s)	86, 416, 428
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	4 cut(s)	379, 572, 718, 845
MmeI	TCCRAC	4 cut(s)	455, 765, 939, 963
MroI	TCCGGA	1 cut(s)	860
MslI	CAYNNNNRTG	1 cut(s)	1021
MspI	CCGG	2 cut(s)	374, 861
NdeII	GATC	6 cut(s)	35, 64, 588, 787, 823, 976
NlaIII	CATG	6 cut(s)	235, 412, 604, 781, 801, 922
NlaIV	GGNNCC	1 cut(s)	789
NmeAIII	GCCGAG	1 cut(s)	926
NmuCI	GTSAC	2 cut(s)	157, 800
NspI	RCATGY	1 cut(s)	801
OliI	CACNNNNGTG	1 cut(s)	1021
PceI	AGGCCT	1 cut(s)	732
PciSI	GCTCTTC	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	2 cut(s)	584, 832
PfeI	GAWTC	1 cut(s)	962
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	703, 773
Ple19I	CGATCG	1 cut(s)	826
Psp1406I	AACGTT	1 cut(s)	709
PspN4I	GGNNCC	1 cut(s)	789
PsuI	RGATCY	1 cut(s)	787
PvuI	CGATCG	1 cut(s)	826
RsaI	GTAC	5 cut(s)	152, 368, 514, 677, 855
RsaNI	GTAC	5 cut(s)	151, 367, 513, 676, 854
RseI	CAYNNNNRTG	1 cut(s)	1021
SapI	GCTCTTC	1 cut(s)	429
SatI	GCNGC	2 cut(s)	702, 772
Sau3AI	GATC	6 cut(s)	35, 64, 588, 787, 823, 976
ScaI	AGTACT	2 cut(s)	514, 855
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	1 cut(s)	783
SmiMI	CAYNNNNRTG	1 cut(s)	1021
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SpeI	ACTAGT	1 cut(s)	515
Sse9I	AATT	4 cut(s)	379, 572, 718, 845
SseBI	AGGCCT	1 cut(s)	732
SsiI	CCGC	4 cut(s)	276, 470, 663, 771
SspMI	CTAG	4 cut(s)	359, 516, 672, 890
StuI	AGGCCT	1 cut(s)	732
StyI	CCWWGG	2 cut(s)	792, 889
TaaI	ACNGT	4 cut(s)	157, 337, 806, 1020
TaiI	ACGT	3 cut(s)	51, 712, 875
TaqI	TCGA	3 cut(s)	87, 164, 822
TasI	AATT	4 cut(s)	379, 572, 718, 845
TatI	WGTACW	3 cut(s)	366, 512, 853
TauI	GCSGC	1 cut(s)	774
TfiI	GAWTC	1 cut(s)	962
TscAI	CASTG	3 cut(s)	160, 811, 1025
TseFI	GTSAC	2 cut(s)	157, 800
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	2 cut(s)	157, 800
TspDTI	ATGAA	4 cut(s)	517, 585, 702, 829
TspRI	CASTG	3 cut(s)	160, 811, 1025
Van91I	CCANNNNNTGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	572, 845
XceI	RCATGY	1 cut(s)	801
XmaJI	CCTAGG	1 cut(s)	889
XspI	CTAG	4 cut(s)	359, 516, 672, 890
ZraI	GACGTC	1 cut(s)	49
ZrmI	AGTACT	2 cut(s)	514, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.