FvH4_6g40892

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
32314109 .. 32316695
2587 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40892.t1

Sequence Viewer

Length: 1674 bp
ATGAGAGGTAGAAGACGTAGAACACTACCTTCAGGATCAACAGAGGCCAACAAACTTCCAGATCTCCCTGAAGAGATAATAATCGAGATCATTGTTCGACTCCCTCGCAACTCAGTTGCTCGGAGCAAGTGTTTGTCCAAGCGTTGGTACACTCTCATCTCGAACCCTGATTTCCTCGCTCGTTTTCTAAGCCTCCAAAGTGAAATGAAACCCCCTCTTGAAAATGGCATGATTTTCACAGACTATAACTCAGAAAAATATTCTTCGTTTACCGCAATGTCCCAGCTTCCGAAATCTGTGAAACACAGATTGGGAAAGAGAGGGTCTTGCACAGTTCTGGCTACATACAATGACCTAGTTTTGTGCTTTCGTGATCATTACTACAACATATGCAATCTACATACCATGCAATGTGTTGCTCTTCCTCCAACTCTTCCACACCATGATGAACTTAAGATTGCAGAAGTGGGATTAATCTGTGAACCCTACTATAAAGAACAAAATGGTAGTACGAGTAGAACTATCATCCTCAATGATGAGTATAAGTGCCGTGTTGTGCTCATTTATGAATTTTCAGGGTATTCGAAAAAAATCTGCATAGACATATTTTTCTCTGAGACTGGTGAATGGAGAGAATATGTTGTAATCTGCCCCACAAGTGCTAGGGAATATTGCAGTATTGACAATGGTGCTGCGAAACGTTCTTACAATAATAGTGGAGGTCTTGCCTACAATGGAAAGTTGTATTGGTTAGGTGAAGCTGGCATCATGGAGTTGGATCCCATGGCATGTGACAGTAATACTAGCTCTAGAAATCTCATCGATCGGGGTTGTCGTTTCATTCAATTTCAAACTTTCGGAAACCCTATGTTGGGGAAGAGATTCCTAGGTGTATGCCGAGGGTGTATGTGCCTCATGTCGTGTCTTGATAGATACAACTTTGAAATCTACAAGTTGGAATCAGGAGATGATGATCAGTTGGATGGAGGCAAATGGTGTTTTACACTTGCTACACAGTGGTGCATGCCTCTCAACCGACGTACTGGGGCTCTTTGGGTACTATCGTTGGACCCGTTTATCGAGGACTGCTTCTATTTGATCTCCATGTCTGGATACTTTGGCAAGTGCTACATGAGGACCGGAGTGATCGAGTACAATTCAGTGAAGCGATGCCATGGTTTTGGTTATCGGGATTCATTTGGAGCCTTCCCATTTGTGCTTCCGTGGTGGCCGACACCAGTTCCTCGAATTAAACATGACCCCAGACAACCAGCTGTTCAGAATGGTATTGACATTCTGTGCAGTTTGTTACTGGATCGATCCATAATGACTATCCTCTCGTTGACCTGCAACAACAAGGATAACCGGGGGCTTCCGGTCTTTCCTCCTCTGAAGCTTAAGTTAGTATCTGGTGTGGGTTCTCTTTACTTGAAAACCGATGTGGGACAATTGTCTTCACTGTTACTTAAAACACCCTCCCTTATGCCTTCTGAAACCGTTTCCGGCCCAATGCTGCCACCGAGGTCAGGCCCGGCCCATCCTACTTATGGGCGGGAACCTCGGAGCGACCTCGATTGTGATGGAACCCCTGCTGGTTTACAGGCTCGGGAGGTTGTTTCATGCACAACCGACTATACTATGAATGAAATCCTTGCTTGCCTGGGAATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

558

Amino Acids

62.95

Weight (kDa)

8.44

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 59 3.3e-08 F-box domain
F-box-like PF12937 20 - 63 4e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1355
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 2 cut(s) 273, 1552
AclI AACGTT 1 cut(s) 700
AclWI GGATC 5 cut(s) 43, 773, 786, 1314, 1323
AcoI YGGCCR 1 cut(s) 1229
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 3 cut(s) 15, 90, 1412
AfaI GTAC 5 cut(s) 149, 511, 1042, 1059, 1154
AfiI CCNNNNNNNGG 5 cut(s) 144, 871, 872, 1526, 1547
AflII CTTAAG 2 cut(s) 452, 1397
AgsI TTSAA 5 cut(s) 221, 845, 851, 944, 1432
AjnI CCWGG 1 cut(s) 1659
AjuI GAANNNNNNNTTGG 4 cut(s) 293, 325, 730, 762
AleI CACNNNNGTG 1 cut(s) 1018
AluBI AGCT 5 cut(s) 286, 761, 807, 1274, 1396
AluI AGCT 5 cut(s) 286, 761, 807, 1274, 1396
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 5 cut(s) 43, 773, 786, 1314, 1323
Ama87I CYCGRG 1 cut(s) 1605
AoxI GGCC 5 cut(s) 45, 1229, 1504, 1528, 1533
ApeKI GCWGC 2 cut(s) 692, 1513
ApoI RAATTY 1 cut(s) 569
AseI ATTAAT 1 cut(s) 473
Asp700I GAANNNNTTC 1 cut(s) 881
AspA2I CCTAGG 1 cut(s) 886
AspS9I GGNCC 5 cut(s) 1069, 1137, 1505, 1529, 1534
AsuC2I CCSGG 2 cut(s) 1367, 1532
AsuHPI GGTGA 2 cut(s) 635, 767
AsuII TTCGAA 1 cut(s) 584
AvaI CYCGRG 1 cut(s) 1605
AvaII GGWCC 2 cut(s) 1069, 1137
AvrII CCTAGG 1 cut(s) 886
BaeI ACNNNNGTAYC 2 cut(s) 1049, 1082
BamHI GGATCC 1 cut(s) 778
BanII GRGCYC 1 cut(s) 1051
BbsI GAAGAC 2 cut(s) 19, 1446
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 2 cut(s) 679, 1500
BccI CCATC 3 cut(s) 977, 1545, 1574
BceAI ACGGC 1 cut(s) 534
BciT130I CCWGG 1 cut(s) 1661
BciVI GTATCC 1 cut(s) 1106
BclI TGATCA 2 cut(s) 373, 973
BcnI CCSGG 2 cut(s) 1367, 1532
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 5 cut(s) 356, 663, 804, 810, 887
BfrI CTTAAG 2 cut(s) 452, 1397
BfuAI ACCTGC 1 cut(s) 1355
BfuI GTATCC 1 cut(s) 1106
BglII AGATCT 1 cut(s) 61
BisI GCNGC 2 cut(s) 693, 1514
BlnI CCTAGG 1 cut(s) 886
BlsI GCNGC 2 cut(s) 694, 1515
Bme1390I CCNGG 3 cut(s) 1367, 1532, 1661
Bme18I GGWCC 2 cut(s) 1069, 1137
BmeT110I CYCGRG 1 cut(s) 1605
BmgT120I GGNCC 5 cut(s) 1069, 1137, 1505, 1529, 1534
BmiI GGNNCC 5 cut(s) 780, 1071, 1204, 1557, 1585
BmrFI CCNGG 3 cut(s) 1367, 1532, 1661
BmrI ACTGGG 1 cut(s) 1053
BmsI GCATC 2 cut(s) 774, 1160
BmuI ACTGGG 1 cut(s) 1053
BoxI GACNNNNGTC 1 cut(s) 1450
BpiI GAAGAC 2 cut(s) 19, 1446
Bpu14I TTCGAA 1 cut(s) 584
BpuMI CCSGG 2 cut(s) 1367, 1532
Bsa29I ATCGAT 2 cut(s) 822, 1318
BsaBI GATNNNNATC 2 cut(s) 80, 972
BsaJI CCNNGG 9 cut(s) 783, 886, 898, 1174, 1223, 1366, 1520, 1559, 1660
BsaWI WCCGGW 2 cut(s) 1139, 1375
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 5 cut(s) 144, 871, 872, 1526, 1547
Bse1I ACTGG 4 cut(s) 625, 1048, 1238, 1317
Bse3DI GCAATG 2 cut(s) 282, 416
Bse8I GATNNNNATC 2 cut(s) 80, 972
BseBI CCWGG 1 cut(s) 1661
BseCI ATCGAT 2 cut(s) 822, 1318
BseDI CCNNGG 9 cut(s) 783, 886, 898, 1174, 1223, 1366, 1520, 1559, 1660
BseGI GGATG 3 cut(s) 525, 988, 1537
BseJI GATNNNNATC 2 cut(s) 80, 972
BseLI CCNNNNNNNGG 5 cut(s) 144, 871, 872, 1526, 1547
BseMI GCAATG 2 cut(s) 282, 416
BseMII CTCAG 3 cut(s) 126, 264, 606
BseNI ACTGG 4 cut(s) 625, 1048, 1238, 1317
BseRI GAGGAG 1 cut(s) 1377
BseXI GCAGC 2 cut(s) 679, 1500
BseYI CCCAGC 1 cut(s) 282
BsgI GTGCAG 1 cut(s) 1321
Bsh1285I CGRYCG 1 cut(s) 826
BshFI GGCC 5 cut(s) 47, 1231, 1506, 1530, 1535
BshVI ATCGAT 2 cut(s) 822, 1318
BsiEI CGRYCG 1 cut(s) 826
BsiHKAI GWGCWC 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 1605
BsiSI CCGG 5 cut(s) 1140, 1366, 1376, 1503, 1532
BslFI GGGAC 2 cut(s) 265, 1458
BslI CCNNNNNNNGG 5 cut(s) 144, 871, 872, 1526, 1547
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 2 cut(s) 265, 1458
BsnI GGCC 5 cut(s) 47, 1231, 1506, 1530, 1535
BsoBI CYCGRG 1 cut(s) 1605
Bsp119I TTCGAA 1 cut(s) 584
Bsp1286I GDGCHC 2 cut(s) 561, 1051
Bsp19I CCATGG 2 cut(s) 783, 1174
BspACI CCGC 2 cut(s) 273, 1552
BspANI GGCC 5 cut(s) 47, 1231, 1506, 1530, 1535
BspCNI CTCAG 3 cut(s) 125, 263, 607
BspDI ATCGAT 2 cut(s) 822, 1318
BspLI GGNNCC 5 cut(s) 780, 1071, 1204, 1557, 1585
BspMI ACCTGC 1 cut(s) 1355
BspPI GGATC 5 cut(s) 43, 773, 786, 1314, 1323
BspQI GCTCTTC 1 cut(s) 426
BspT104I TTCGAA 1 cut(s) 584
BspTI CTTAAG 2 cut(s) 452, 1397
BsrDI GCAATG 2 cut(s) 282, 416
BsrI ACTGG 4 cut(s) 625, 1048, 1238, 1317
BssECI CCNNGG 9 cut(s) 783, 886, 898, 1174, 1223, 1366, 1520, 1559, 1660
BssT1I CCWWGG 3 cut(s) 783, 886, 1174
Bst2UI CCWGG 1 cut(s) 1661
Bst4CI ACNGT 5 cut(s) 334, 797, 1017, 1461, 1498
Bst6I CTCTTC 4 cut(s) 66, 426, 438, 872
BstAFI CTTAAG 2 cut(s) 452, 1397
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 3 cut(s) 763, 1025, 1657
BstDEI CTNAG 4 cut(s) 112, 188, 250, 615
BstDSI CCRYGG 3 cut(s) 783, 1174, 1223
BstF5I GGATG 3 cut(s) 525, 988, 1537
BstMAI GTCTC 1 cut(s) 611
BstMCI CGRYCG 1 cut(s) 826
BstNI CCWGG 1 cut(s) 1661
BstNSI RCATGY 2 cut(s) 792, 1027
BstPAI GACNNNNGTC 1 cut(s) 1450
BstSCI CCNGG 3 cut(s) 1365, 1530, 1659
BstV1I GCAGC 2 cut(s) 679, 1500
BstV2I GAAGAC 2 cut(s) 19, 1446
BstX2I RGATCY 2 cut(s) 61, 778
BstXI CCANNNNNNTGG 1 cut(s) 1181
BstYI RGATCY 2 cut(s) 61, 778
Bsu15I ATCGAT 2 cut(s) 822, 1318
BsuI GTATCC 1 cut(s) 1106
BsuRI GGCC 5 cut(s) 47, 1231, 1506, 1530, 1535
BsuTUI ATCGAT 2 cut(s) 822, 1318
BtgI CCRYGG 3 cut(s) 783, 1174, 1223
BtgZI GCGATG 1 cut(s) 1183
BtsCI GGATG 3 cut(s) 525, 988, 1537
BtsIMutI CAGTG 3 cut(s) 1022, 1167, 1457
BveI ACCTGC 1 cut(s) 1355
Cac8I GCNNGC 3 cut(s) 763, 1025, 1657
Cfr13I GGNCC 5 cut(s) 1069, 1137, 1505, 1529, 1534
ClaI ATCGAT 2 cut(s) 822, 1318
Csp6I GTAC 5 cut(s) 148, 510, 1041, 1058, 1153
CspCI CAANNNNNGTGG 2 cut(s) 697, 732
CviQI GTAC 5 cut(s) 148, 510, 1041, 1058, 1153
DdeI CTNAG 4 cut(s) 112, 188, 250, 615
EaeI YGGCCR 1 cut(s) 1229
Eam1104I CTCTTC 4 cut(s) 66, 426, 438, 872
EarI CTCTTC 4 cut(s) 66, 426, 438, 872
Eco130I CCWWGG 3 cut(s) 783, 886, 1174
Eco24I GRGCYC 1 cut(s) 1051
Eco47I GGWCC 2 cut(s) 1069, 1137
Eco57I CTGAAG 3 cut(s) 15, 90, 1412
Eco88I CYCGRG 1 cut(s) 1605
EcoRII CCWGG 1 cut(s) 1659
EcoT14I CCWWGG 3 cut(s) 783, 886, 1174
EcoT38I GRGCYC 1 cut(s) 1051
ErhI CCWWGG 3 cut(s) 783, 886, 1174
FaqI GGGAC 2 cut(s) 265, 1458
FauI CCCGC 1 cut(s) 1545
FauNDI CATATG 1 cut(s) 389
FbaI TGATCA 2 cut(s) 373, 973
Fnu4HI GCNGC 2 cut(s) 693, 1514
FokI GGATG 3 cut(s) 512, 995, 1524
FriOI GRGCYC 1 cut(s) 1051
Fsp4HI GCNGC 2 cut(s) 693, 1514
FspBI CTAG 5 cut(s) 356, 663, 804, 810, 887
GluI GCNGC 2 cut(s) 693, 1514
GsaI CCCAGC 1 cut(s) 286
HaeIII GGCC 5 cut(s) 47, 1231, 1506, 1530, 1535
HapII CCGG 5 cut(s) 1140, 1366, 1376, 1503, 1532
HincII GTYRAC 1 cut(s) 1344
HindII GTYRAC 1 cut(s) 1344
HindIII AAGCTT 1 cut(s) 1394
HinfI GANTC 4 cut(s) 99, 882, 959, 1193
HpaII CCGG 5 cut(s) 1140, 1366, 1376, 1503, 1532
HphI GGTGA 2 cut(s) 635, 767
Hpy166II GTNNAC 5 cut(s) 150, 270, 482, 1344, 1598
Hpy188I TCNGA 9 cut(s) 123, 253, 291, 616, 860, 1281, 1392, 1492, 1563
Hpy8I GTNNAC 5 cut(s) 150, 270, 482, 1344, 1598
Hpy99I CGWCG 1 cut(s) 1041
HpyAV CCTTC 3 cut(s) 39, 1216, 1497
HpyCH4III ACNGT 5 cut(s) 334, 797, 1017, 1461, 1498
HpyCH4IV ACGT 3 cut(s) 16, 700, 1039
HpyF3I CTNAG 4 cut(s) 112, 188, 250, 615
HpySE526I ACGT 3 cut(s) 16, 700, 1039
Ksp22I TGATCA 2 cut(s) 373, 973
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 3 cut(s) 123, 1202, 1563
Lsp1109I GCAGC 2 cut(s) 679, 1500
LweI GCATC 2 cut(s) 774, 1160
MaeI CTAG 5 cut(s) 356, 663, 804, 810, 887
MaeII ACGT 3 cut(s) 16, 700, 1039
MaeIII GTNAC 3 cut(s) 791, 1308, 1461
MboII GAAGA 7 cut(s) 24, 83, 255, 413, 425, 889, 1446
MfeI CAATTG 1 cut(s) 1448
MflI RGATCY 2 cut(s) 61, 778
MhlI GDGCHC 2 cut(s) 561, 1051
MluCI AATT 5 cut(s) 569, 845, 1156, 1248, 1448
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 5 cut(s) 452, 756, 936, 960, 1047
MroXI GAANNNNTTC 1 cut(s) 881
MseI TTAA 5 cut(s) 453, 473, 1251, 1398, 1467
MslI CAYNNNNRTG 2 cut(s) 444, 1018
MspA1I CMGCKG 1 cut(s) 1274
MspCI CTTAAG 2 cut(s) 452, 1397
MspI CCGG 5 cut(s) 1140, 1366, 1376, 1503, 1532
MspR9I CCNGG 3 cut(s) 1367, 1532, 1661
MunI CAATTG 1 cut(s) 1448
MvaI CCWGG 1 cut(s) 1661
NciI CCSGG 2 cut(s) 1367, 1532
NcoI CCATGG 2 cut(s) 783, 1174
NdeI CATATG 1 cut(s) 389
NlaIV GGNNCC 5 cut(s) 780, 1071, 1204, 1557, 1585
NmeAIII GCCGAG 1 cut(s) 923
NmuCI GTSAC 1 cut(s) 791
NspI RCATGY 2 cut(s) 792, 1027
NspV TTCGAA 1 cut(s) 584
OliI CACNNNNGTG 1 cut(s) 1018
PaeI GCATGC 1 cut(s) 1027
PciSI GCTCTTC 1 cut(s) 426
PcsI WCGNNNNNNNCGW 2 cut(s) 832, 1070
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 3 cut(s) 882, 959, 1193
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 2 cut(s) 694, 1515
Ple19I CGATCG 1 cut(s) 826
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PshAI GACNNNNGTC 1 cut(s) 1450
PshBI ATTAAT 1 cut(s) 473
Psp1406I AACGTT 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 1659
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 1 cut(s) 1659
PspN4I GGNNCC 5 cut(s) 780, 1071, 1204, 1557, 1585
PspPI GGNCC 5 cut(s) 1069, 1137, 1505, 1529, 1534
PsuI RGATCY 2 cut(s) 61, 778
PvuI CGATCG 1 cut(s) 826
PvuII CAGCTG 1 cut(s) 1274
RsaI GTAC 5 cut(s) 149, 511, 1042, 1059, 1154
RsaNI GTAC 5 cut(s) 148, 510, 1041, 1058, 1153
RseI CAYNNNNRTG 2 cut(s) 444, 1018
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 5 cut(s) 453, 473, 1251, 1398, 1467
SatI GCNGC 2 cut(s) 693, 1514
Sau96I GGNCC 5 cut(s) 1069, 1137, 1505, 1529, 1534
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 3 cut(s) 1367, 1532, 1661
SduI GDGCHC 2 cut(s) 561, 1051
SfaNI GCATC 2 cut(s) 774, 1160
SfuI TTCGAA 1 cut(s) 584
SinI GGWCC 2 cut(s) 1069, 1137
SmiMI CAYNNNNRTG 2 cut(s) 444, 1018
SmlI CTYRAG 2 cut(s) 452, 1397
SmoI CTYRAG 2 cut(s) 452, 1397
SphI GCATGC 1 cut(s) 1027
Sse9I AATT 5 cut(s) 569, 845, 1156, 1248, 1448
SsiI CCGC 2 cut(s) 273, 1552
SspI AATATT 2 cut(s) 260, 671
SspMI CTAG 5 cut(s) 356, 663, 804, 810, 887
StyD4I CCNGG 3 cut(s) 1365, 1530, 1659
StyI CCWWGG 3 cut(s) 783, 886, 1174
TaaI ACNGT 5 cut(s) 334, 797, 1017, 1461, 1498
TaiI ACGT 3 cut(s) 19, 703, 1042
TasI AATT 5 cut(s) 569, 845, 1156, 1248, 1448
TatI WGTACW 1 cut(s) 1152
TfiI GAWTC 3 cut(s) 882, 959, 1193
Tru1I TTAA 5 cut(s) 453, 473, 1251, 1398, 1467
Tru9I TTAA 5 cut(s) 453, 473, 1251, 1398, 1467
TscAI CASTG 3 cut(s) 1022, 1167, 1464
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 2 cut(s) 692, 1513
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 8 cut(s) 221, 462, 582, 829, 1185, 1608, 1655, 1659
TspGWI ACGGA 1 cut(s) 1212
TspRI CASTG 3 cut(s) 1022, 1167, 1464
Van91I CCANNNNNTGG 1 cut(s) 144
Vha464I CTTAAG 2 cut(s) 452, 1397
VpaK11BI GGWCC 2 cut(s) 1069, 1137
VspI ATTAAT 1 cut(s) 473
XapI RAATTY 1 cut(s) 569
XbaI TCTAGA 1 cut(s) 809
XceI RCATGY 2 cut(s) 792, 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 1544
XmaJI CCTAGG 1 cut(s) 886
XmnI GAANNNNTTC 1 cut(s) 881
XspI CTAG 5 cut(s) 356, 663, 804, 810, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.