Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004196

Physical Location & Seq

Genomic Coordinates Forward (+)

3535141 .. 3536919

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06690.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGGAAGCTGGCAGAGGACAGGAGGACTGGCTATGGTGGAGCTTCAGTCTGTTGTGGCTGAAAGCTCTGGTGCTCAGCTGGTGTTTGGAGCAATGGGATTTCCTGTGATGATGGGTGTATTGAGAGAAGAATGCGACGATGTTGAAATGGTTTGGTTCTGTTTCTTGCATCAAGAAAGCTCAATTCTTCTTGCTCAATTCTTCTTGATTCACCAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001650 GO:0002009 GO:0002165 GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005794 GO:0005795 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006900 GO:0006901 GO:0006903 GO:0006996 GO:0007030 GO:0007275 GO:0007346 GO:0007444 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008104 GO:0008150 GO:0008565 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009987 GO:0010256 GO:0010389 GO:0010564 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022406 GO:0022607 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031312 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0033036 GO:0034613 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035239 GO:0035295 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0044719 GO:0045056 GO:0045184 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048211 GO:0048219 GO:0048278 GO:0048471 GO:0048513 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051726 GO:0060429 GO:0060562 GO:0061024 GO:0061025 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090066 GO:0090114 GO:0090498 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0140056 GO:1901987 GO:1901990 GO:1902749

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Uso1_p115_C Uso1_p115_head

Protein Analysis

74

Amino Acids

8.1

Weight (kDa)

4.37

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27530
fragaria_vesca	FvH4_1g06690 FvH4_1g06690 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710
malus_domestica	MD09G1023300.v1.1 MD17G1022800.v1.1
prunus_persica	Prupe.3G293500_v2.0.a1 Prupe.3G293600_v2.0.a1
pyrus_communis	pycom111g01940
rosa_chinensis	RchiOBHm_Chr2g0173241 RchiOBHm_Chr2g0173251
rosa_laevigata	RLG00000022173 RLG00000022175
rosa_multiflora	Rmu_sc0010961.1_g000008 Rmu_sc0010961.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079090
rosa_rugosa	Rorug02G0566800 Rorug02G0566900 Rorug02G0566900 Rorug02G0566900
rosa_samantha	Rh2AG646700 Rh2BG657400 Rh2CG622600 Rh2CG623100 Rh2CG623200 Rh2DG671000 Rh2DG671500 Rh2DG671600
rosa_wichuraiana	Rw2G053120 Rw2G053130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	5 cut(s)	9, 43, 66, 79, 180
AluI	AGCT	5 cut(s)	9, 43, 66, 79, 180
Alw21I	GWGCWC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	76
BccI	CCATC	1 cut(s)	106
BlpI	GCTNAGC	1 cut(s)	75
BmsI	GCATC	1 cut(s)	178
Bpu1102I	GCTNAGC	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	11
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	7 cut(s)	9, 32, 43, 59, 66, 79, 180
CviKI_1	RGCY	7 cut(s)	9, 32, 43, 59, 66, 79, 180
DdeI	CTNAG	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	29
FaeI	CATG	1 cut(s)	222
FaiI	YATR	2 cut(s)	35, 220
FatI	CATG	1 cut(s)	218
Hin1II	CATG	1 cut(s)	222
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	203
Hpy188III	TCNNGA	2 cut(s)	173, 205
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	40, 89
LpnPI	CCDG	5 cut(s)	6, 14, 54, 65, 117
LweI	GCATC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	140, 179, 193
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	2 cut(s)	183, 197
MnlI	CCTC	2 cut(s)	9, 17
MspA1I	CMGCKG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	222
PctI	GAATGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	5 cut(s)	11, 45, 68, 81, 182
SfaNI	GCATC	1 cut(s)	178
Sse9I	AATT	2 cut(s)	183, 197
TasI	AATT	2 cut(s)	183, 197
TfiI	GAWTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.