Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004196

Physical Location & Seq

Genomic Coordinates Forward (+)

80965374 .. 80972110

Gene Structure 6737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G053120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2760 bp

ATGGGGGAGCGCCACATCCAGAAACGAGTCTGCTCCATTTTTTGTCGGGGGGTTGTAGGTCTCGTCTTCGGCAATGAGAAATCTTCTTCTTCAAATGAAGACAGTTATGTTGAGCGATTGCTGGACTGTATAAGCAATGGGAAGCTGGCAGAGGACAGGAGGACTGCTATGGTGGAGCTTCAGTCCGTTGTGGCAGAGAGCTCTGGTGCTCAGCTGGCATTTGGAGCAATGGGCTTTCCTGTGATGATGGGTGTATTGAGAGAAGAGCGCGACGATGTTGAAATGGTTCGAGGTGCCCTTGAAACTCTTGTAGGTGCATTGACTCCTATTGAACATGCAAAAGTCCCAAAGAATGAGATTCAACCTGCTCTAATGAACACTGATTTGCTTTCCAGAGAAGCAGACAGCATTTCACTTCTCTTAAGCTTGTTGTCAGAGGAGGATTTCTATGTACGATATTACACTCTTCAACTCTTGACAGCTCTTCTCACAAATTCTCCAAATAGGTTACAGGAAGCCATTCTGACCATACCTCGTGGTATAACTCGCCTAATGGATATGCTTATGGATCGGGAGGTTATACGAAATGAGGCCTTATTACTTCTTACTTACTTGACACGTGAAGCTGAGGAAATTCAAAAAATTGTGGTCTTTGAAGGTGCTTTTGAAAAGATTTTCAGCATCATCAAAGAGGAAGGTGGCTCAGACGGTGGTGTTGTTGTCCAGGACTGTATTGAACTGTTAAACAACCTTATTCGGAAGAATGCATCTAATCAGATACTACTGAGGGAGACAATTGGATTTGACCCATTAATGTCAATTTTGAAGCTACGAGGAAGTGCTTACAGTTTCACTCAACAAAAGACAATTAATCTACTCAGTTCGTTGGAAACTATTAATTTGCTGATAATGGGAGGTTCAGAGGCTGATCCTGGAAAAGATGCAAATAAGCTGACAAACAAGACAACTCTTGTTCAGAAAAAAATCTTGGACCATCTTCTAATGCTGGGTGTAGAAAGCCAGTGGGCACCTGTAGCTGTCCGTTGTGCAGCATTACAATGCATCGGTAATCTAATTATCGGACATTCCAAGAATCTTGATGCCCTTGCAAGCAAAGTTCTCGGAGAGGGGCCACAGGAAGCTGCTCTGAACTCAATTCTACGAATCATCTTAAGGACATCTAGTGTACAAGAATTTGTTGCAGCTGATTATGTTTTTAAGAGCTTTTGTGAGAAAAATGCTGATGGCCAAACAATGTTAGCATCAACATTGATTCCTCAACCACATTCAATGACTCATGCTCCCCTTGAGGAAGATGTGAACATGTCATTTGGAAGCATGCTGTTACAAGGTCTTACCTTGAGTGAGAGTGAAGTTGATCTTGAGACATGTTGCAGAGCTGCCAGTGTTCTATCTCATGTCATGAAGGACAATATCCAGTGCAAGGAAAAGGTGTTGCATATTGACCTTGAGGCACCTACGCCATCTTTAGGCGCTTCTGAGCCTCTAATGCATCGCGTGGTAAAATACTTGGCCCTTTCCTCTTCCATGAAAAGCAAAGATGGAAAGTCAGGTGGAAATGCATATGTTCAACCAATCCTCTTGAAAATGCTGGTGACCTGGCTAGCTGATTTCCCTAGTGCTGTTCATTGCTTCCTAGATTCACGTCCCCACATCACATATCTGCTTGAACTGGTATCCAGTTCATCCGCTACAGTGTTCGTAAAGGGATTGGCGGCTGTTCTTCTGGGAGAGTGTGTTATCTACAATAAATCAGGTGAAAGTGGGAAAGATGCTTTTACTGTAGTTGATTCCATAAGCCAGAAGGTTGGACTCACATCATACTTTCTGAAGTTTGATGAAATGAGAAAAAACTTCCTTTTCACCTCTGCAAGGTCTGCTGAGCCCCGTCAACAATTAACCAGATCTGCTTCTGCTGGTATGGTAGAGCCTGAAGATGTTGATGGGAACAATTTATCTGATCAGAAAGATGAGGATCTACCGGTTCTCTCCTCAATCTTTGATGCTGCATTTGTAAACCTTGTTAAGAGTTTAGAGGCAAACATCAGAGAAAAAATCGTTGAGGTTTACAGTAATCCAAAGAGCAAGGTGGCAGTGGTGCCAGCAGAATTGGAACAAAAGAGTGGGGAAAGTGATGGAGAGTATGTTAAGCGGCTGAAAGAATTTGTGGAAAAGCAATGCTCTGAGATACAGGACCTCCTCGGCCGCAATGCAAGCTTGGCTGAGGACGTGGCAGCAACTGGTGGGGGAAGTCATTCTCGGTCTGAGCAAGGCACAGGCTCAGATAGAGTTCATGTAGAGACGCTTAGACGAGATCTTCAAGAAGCATCTAGGCGGTTGGAGTTGCTCAAGGTAGAGAAAGCCAAGATTGAATCTGAGGCATCCATGTATAAAAATTTAGCTGGCAAGATGGAATCCGACCTGAAGAGTCTATCGGATGCTTACAACAGTCTTGAGCAGGCCAATTTCCAACTAGAAAAGGAGGTAAGAGGTCAAAAGGGTGTGGGGTCTTCAGCCTTTCCAGATGTGGATGCAATTAGAGCTCAGGCAAGGGAAGAAGCTCAGAAGGAGAGCGAGGCAGAACTGAATGATCTTCTCGTGTGCCTTGGACAAGAACAGAGCAAGGTCGAAAAGCTTAGTGCCAGGTTGTTGGAGTTGGGGGAGGACGTGGACAAGCTGCTTGAAGATATCGGAGATGATATGGGATTGCCTGGAGATGGTGAAGAGGAGGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005795 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009791 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045056 GO:0045184 GO:0046907 GO:0048193 GO:0048211 GO:0048278 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Uso1_p115_C Uso1_p115_head

Protein Analysis

919

Amino Acids

100.87

Weight (kDa)

4.91

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Uso1_p115_head	PF04869	383 - 692	3.3e-24	Uso1 / p115 like vesicle tethering protein, head region
Uso1_p115_C	PF04871	794 - 917	8.7e-29	Uso1 / p115 like vesicle tethering protein, C terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27530
fragaria_vesca	FvH4_1g06690 FvH4_1g06690 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710
malus_domestica	MD09G1023300.v1.1 MD17G1022800.v1.1
prunus_persica	Prupe.3G293500_v2.0.a1 Prupe.3G293600_v2.0.a1
pyrus_communis	pycom111g01940
rosa_chinensis	RchiOBHm_Chr2g0173241 RchiOBHm_Chr2g0173251
rosa_laevigata	RLG00000022173 RLG00000022175
rosa_multiflora	Rmu_sc0010961.1_g000008 Rmu_sc0010961.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079090
rosa_rugosa	Rorug02G0566800 Rorug02G0566900 Rorug02G0566900 Rorug02G0566900
rosa_samantha	Rh2AG646700 Rh2BG657400 Rh2CG622600 Rh2CG623100 Rh2CG623200 Rh2DG671000 Rh2DG671500 Rh2DG671600
rosa_wichuraiana	Rw2G053120 Rw2G053130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccB1I	GGYRCC	4 cut(s)	293, 1027, 1474, 2119
AccII	CGCG	2 cut(s)	270, 1518
AciI	CCGC	5 cut(s)	1710, 1736, 2173, 2227, 2356
AclWI	GGATC	3 cut(s)	576, 923, 2004
AcoI	YGGCCR	2 cut(s)	1246, 2224
AcsI	RAATTY	5 cut(s)	493, 633, 1193, 2183, 2416
AcuI	CTGAAG	5 cut(s)	164, 1871, 1974, 2465, 2517
AcvI	CACGTG	1 cut(s)	620
AfaI	GTAC	2 cut(s)	453, 1188
AfiI	CCNNNNNNNGG	4 cut(s)	1444, 1490, 1893, 2738
AflII	CTTAAG	2 cut(s)	421, 1171
AflIII	ACRYGT	3 cut(s)	617, 1323, 1388
AgeI	ACCGGT	1 cut(s)	2002
AjiI	CACGTC	3 cut(s)	1667, 2251, 2689
AjnI	CCWGG	5 cut(s)	723, 931, 1619, 2663, 2731
AjuI	GAANNNNNNNTTGG	2 cut(s)	971, 1003
Alw21I	GWGCWC	3 cut(s)	203, 211, 2566
Alw26I	GTCTC	4 cut(s)	65, 785, 1379, 2315
AlwI	GGATC	3 cut(s)	576, 923, 2004
AlwNI	CAGNNNCTG	2 cut(s)	926, 2261
AoxI	GGCC	6 cut(s)	591, 1130, 1246, 1533, 2224, 2481
ApeKI	GCWGC	7 cut(s)	1049, 1142, 1202, 1400, 2027, 2255, 2698
ApoI	RAATTY	5 cut(s)	493, 633, 1193, 2183, 2416
AseI	ATTAAT	3 cut(s)	812, 870, 897
AsiGI	ACCGGT	1 cut(s)	2002
Asp700I	GAANNNNTTC	3 cut(s)	285, 519, 2275
AspLEI	GCGC	3 cut(s)	12, 270, 1496
AspS9I	GGNCC	4 cut(s)	991, 1130, 1534, 2215
AsuHPI	GGTGA	4 cut(s)	1627, 1790, 1876, 2753
AsuNHI	GCTAGC	1 cut(s)	1624
AvaII	GGWCC	2 cut(s)	991, 2215
BaeGI	GKGCMC	2 cut(s)	298, 1030
BalI	TGGCCA	1 cut(s)	1248
BanI	GGYRCC	4 cut(s)	293, 1027, 1474, 2119
BanII	GRGCYC	3 cut(s)	203, 1908, 2566
BauI	CACGAG	2 cut(s)	534, 2618
BbrPI	CACGTG	1 cut(s)	620
BbsI	GAAGAC	3 cut(s)	58, 105, 2523
Bbv12I	GWGCWC	3 cut(s)	203, 211, 2566
BbvCI	CCTCAGC	2 cut(s)	627, 2244
BbvI	GCAGC	7 cut(s)	1061, 1129, 1214, 1387, 2014, 2267, 2685
BccI	CCATC	9 cut(s)	241, 1002, 1238, 1492, 1556, 1958, 2150, 2425, 2732
BcgI	CGANNNNNNTGC	2 cut(s)	1102, 1136
BciT130I	CCWGG	5 cut(s)	725, 933, 1621, 2665, 2733
BciVI	GTATCC	1 cut(s)	1708
BclI	TGATCA	1 cut(s)	1981
BcoDI	GTCTC	4 cut(s)	65, 785, 1379, 2315
BfaI	CTAG	6 cut(s)	1182, 1625, 1638, 1658, 2352, 2495
BfmI	CTRYAG	3 cut(s)	1032, 1713, 1803
BfoI	RGCGCY	2 cut(s)	13, 1497
BfrI	CTTAAG	2 cut(s)	421, 1171
BfuAI	ACCTGC	1 cut(s)	373
BfuI	GTATCC	1 cut(s)	1708
BglII	AGATCT	2 cut(s)	1925, 2335
BlpI	GCTNAGC	2 cut(s)	210, 1902
Bme1390I	CCNGG	5 cut(s)	725, 933, 1621, 2665, 2733
Bme18I	GGWCC	2 cut(s)	991, 2215
BmgBI	CACGTC	3 cut(s)	1667, 2251, 2689
BmgT120I	GGNCC	4 cut(s)	991, 1130, 1534, 2215
BmiI	GGNNCC	5 cut(s)	295, 1029, 1131, 1476, 2121
BmrFI	CCNGG	5 cut(s)	725, 933, 1621, 2665, 2733
BmtI	GCTAGC	1 cut(s)	1628
BpiI	GAAGAC	3 cut(s)	58, 105, 2523
BpmI	CTGGAG	1 cut(s)	2754
Bpu10I	CCTNAGC	3 cut(s)	627, 2244, 2565
Bpu1102I	GCTNAGC	2 cut(s)	210, 1902
BpuEI	CTTGAG	6 cut(s)	1328, 1381, 1403, 1490, 2354, 2495
BsaAI	YACGTR	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	1995
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	2221, 2626
BsaWI	WCCGGW	1 cut(s)	2002
Bsc4I	CCNNNNNNNGG	4 cut(s)	1444, 1490, 1893, 2738
Bse118I	RCCGGY	1 cut(s)	2002
Bse1I	ACTGG	6 cut(s)	1021, 1404, 1438, 1698, 1701, 2266
Bse3DI	GCAATG	6 cut(s)	79, 142, 234, 1648, 2204, 2236
Bse8I	GATNNNNATC	1 cut(s)	1995
BseBI	CCWGG	5 cut(s)	725, 933, 1621, 2665, 2733
BseDI	CCNNGG	2 cut(s)	2221, 2626
BseGI	GGATG	5 cut(s)	15, 1706, 2402, 2464, 2557
BseJI	GATNNNNATC	1 cut(s)	1995
BseLI	CCNNNNNNNGG	4 cut(s)	1444, 1490, 1893, 2738
BseMI	GCAATG	6 cut(s)	79, 142, 234, 1648, 2204, 2236
BseNI	ACTGG	6 cut(s)	1021, 1404, 1438, 1698, 1701, 2266
BseRI	GAGGAG	3 cut(s)	452, 2002, 2210
BseSI	GKGCMC	2 cut(s)	298, 1030
BseX3I	CGGCCG	1 cut(s)	2224
BseXI	GCAGC	7 cut(s)	1061, 1129, 1214, 1387, 2014, 2267, 2685
BseYI	CCCAGC	1 cut(s)	1006
BsgI	GTGCAG	1 cut(s)	1068
Bsh1236I	CGCG	2 cut(s)	270, 1518
Bsh1285I	CGRYCG	1 cut(s)	2227
BshFI	GGCC	6 cut(s)	593, 1132, 1248, 1535, 2226, 2483
BshNI	GGYRCC	4 cut(s)	293, 1027, 1474, 2119
BshTI	ACCGGT	1 cut(s)	2002
BsiEI	CGRYCG	1 cut(s)	2227
BsiHKAI	GWGCWC	3 cut(s)	203, 211, 2566
BsiSI	CCGG	1 cut(s)	2003
BslFI	GGGAC	2 cut(s)	329, 1653
BslI	CCNNNNNNNGG	4 cut(s)	1444, 1490, 1893, 2738
BsmAI	GTCTC	4 cut(s)	65, 785, 1379, 2315
BsmBI	CGTCTC	1 cut(s)	2315
BsmFI	GGGAC	2 cut(s)	329, 1653
BsmI	GAATGC	1 cut(s)	769
BsnI	GGCC	6 cut(s)	593, 1132, 1248, 1535, 2226, 2483
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	6 cut(s)	203, 211, 298, 1030, 1908, 2566
Bsp1407I	TGTACA	1 cut(s)	1186
Bsp143I	GATC	8 cut(s)	568, 928, 1378, 1925, 1981, 1996, 2335, 2611
Bsp1720I	GCTNAGC	2 cut(s)	210, 1902
BspACI	CCGC	5 cut(s)	1710, 1736, 2173, 2227, 2356
BspANI	GGCC	6 cut(s)	593, 1132, 1248, 1535, 2226, 2483
BspFNI	CGCG	2 cut(s)	270, 1518
BspHI	TCATGA	1 cut(s)	1422
BspLI	GGNNCC	5 cut(s)	295, 1029, 1131, 1476, 2121
BspMI	ACCTGC	1 cut(s)	373
BspOI	GCTAGC	1 cut(s)	1628
BspPI	GGATC	3 cut(s)	576, 923, 2004
BspQI	GCTCTTC	2 cut(s)	258, 489
BspT107I	GGYRCC	4 cut(s)	293, 1027, 1474, 2119
BspTI	CTTAAG	2 cut(s)	421, 1171
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	6 cut(s)	79, 142, 234, 1648, 2204, 2236
BsrFI	RCCGGY	1 cut(s)	2002
BsrGI	TGTACA	1 cut(s)	1186
BsrI	ACTGG	6 cut(s)	1021, 1404, 1438, 1698, 1701, 2266
BssAI	RCCGGY	1 cut(s)	2002
BssECI	CCNNGG	2 cut(s)	2221, 2626
BssMI	GATC	8 cut(s)	568, 928, 1378, 1925, 1981, 1996, 2335, 2611
BssSI	CACGAG	2 cut(s)	534, 2618
BssT1I	CCWWGG	1 cut(s)	2626
Bst2BI	CACGAG	2 cut(s)	534, 2618
Bst2UI	CCWGG	5 cut(s)	725, 933, 1621, 2665, 2733
Bst6I	CTCTTC	6 cut(s)	258, 471, 489, 1549, 2441, 2739
BstAFI	CTTAAG	2 cut(s)	421, 1171
BstAPI	GCANNNNNTGC	1 cut(s)	1898
BstAUI	TGTACA	1 cut(s)	1186
BstBAI	YACGTR	1 cut(s)	620
BstC8I	GCNNGC	9 cut(s)	147, 216, 1111, 1340, 1626, 2124, 2236, 2425, 2481
BstEII	GGTNACC	1 cut(s)	1615
BstENI	CCTNNNNNAGG	1 cut(s)	1891
BstF5I	GGATG	5 cut(s)	15, 1706, 2402, 2464, 2557
BstFNI	CGCG	2 cut(s)	270, 1518
BstH2I	RGCGCY	2 cut(s)	13, 1497
BstHHI	GCGC	3 cut(s)	12, 270, 1496
BstKTI	GATC	8 cut(s)	571, 931, 1381, 1928, 1984, 1999, 2338, 2614
BstMAI	GTCTC	4 cut(s)	65, 785, 1379, 2315
BstMBI	GATC	8 cut(s)	568, 928, 1378, 1925, 1981, 1996, 2335, 2611
BstMCI	CGRYCG	1 cut(s)	2227
BstMWI	GCNNNNNNNGC	8 cut(s)	215, 224, 1034, 1510, 1898, 2235, 2240, 2561
BstNI	CCWGG	5 cut(s)	725, 933, 1621, 2665, 2733
BstNSI	RCATGY	4 cut(s)	338, 1327, 1342, 1392
BstPI	GGTNACC	1 cut(s)	1615
BstSCI	CCNGG	5 cut(s)	723, 931, 1619, 2663, 2731
BstSFI	CTRYAG	3 cut(s)	1032, 1713, 1803
BstSLI	GKGCMC	2 cut(s)	298, 1030
BstUI	CGCG	2 cut(s)	270, 1518
BstV1I	GCAGC	7 cut(s)	1061, 1129, 1214, 1387, 2014, 2267, 2685
BstV2I	GAAGAC	3 cut(s)	58, 105, 2523
BstX2I	RGATCY	3 cut(s)	1925, 1996, 2335
BstXI	CCANNNNNNTGG	2 cut(s)	1829, 2671
BstYI	RGATCY	3 cut(s)	1925, 1996, 2335
BstZI	CGGCCG	1 cut(s)	2224
BsuI	GTATCC	1 cut(s)	1708
BsuRI	GGCC	6 cut(s)	593, 1132, 1248, 1535, 2226, 2483
BtgZI	GCGATG	1 cut(s)	1499
BtrI	CACGTC	3 cut(s)	1667, 2251, 2689
BtsCI	GGATG	5 cut(s)	15, 1706, 2402, 2464, 2557
BtsI	GCAGTG	1 cut(s)	2121
BtsIMutI	CAGTG	6 cut(s)	378, 1028, 1411, 1445, 1722, 2121
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	9 cut(s)	147, 216, 1111, 1340, 1626, 2124, 2236, 2425, 2481
CaiI	CAGNNNCTG	2 cut(s)	926, 2261
CciI	TCATGA	1 cut(s)	1422
CfoI	GCGC	3 cut(s)	12, 270, 1496
Cfr10I	RCCGGY	1 cut(s)	2002
Cfr13I	GGNCC	4 cut(s)	991, 1130, 1534, 2215
CseI	GACGC	1 cut(s)	2332
Csp6I	GTAC	2 cut(s)	452, 1187
CspAI	ACCGGT	1 cut(s)	2002
CviQI	GTAC	2 cut(s)	452, 1187
DpnI	GATC	8 cut(s)	570, 930, 1380, 1927, 1983, 1998, 2337, 2613
DpnII	GATC	8 cut(s)	568, 928, 1378, 1925, 1981, 1996, 2335, 2611
EaeI	YGGCCR	2 cut(s)	1246, 2224
EagI	CGGCCG	1 cut(s)	2224
Eam1104I	CTCTTC	6 cut(s)	258, 471, 489, 1549, 2441, 2739
EarI	CTCTTC	6 cut(s)	258, 471, 489, 1549, 2441, 2739
Ecl136II	GAGCTC	2 cut(s)	201, 2564
EclXI	CGGCCG	1 cut(s)	2224
Eco130I	CCWWGG	1 cut(s)	2626
Eco147I	AGGCCT	1 cut(s)	593
Eco24I	GRGCYC	3 cut(s)	203, 1908, 2566
Eco31I	GGTCTC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	2710
Eco47I	GGWCC	2 cut(s)	991, 2215
Eco52I	CGGCCG	1 cut(s)	2224
Eco53kI	GAGCTC	2 cut(s)	201, 2564
Eco57I	CTGAAG	5 cut(s)	164, 1871, 1974, 2465, 2517
Eco72I	CACGTG	1 cut(s)	620
Eco91I	GGTNACC	1 cut(s)	1615
EcoICRI	GAGCTC	2 cut(s)	201, 2564
EcoNI	CCTNNNNNAGG	1 cut(s)	1891
EcoO109I	RGGNCCY	1 cut(s)	2215
EcoO65I	GGTNACC	1 cut(s)	1615
EcoRII	CCWGG	5 cut(s)	723, 931, 1619, 2663, 2731
EcoRV	GATATC	1 cut(s)	2710
EcoT14I	CCWWGG	1 cut(s)	2626
EcoT22I	ATGCAT	4 cut(s)	769, 1064, 1515, 1585
EcoT38I	GRGCYC	3 cut(s)	203, 1908, 2566
ErhI	CCWWGG	1 cut(s)	2626
Esp3I	CGTCTC	1 cut(s)	2315
FalI	AAGNNNNNCTT	2 cut(s)	1365, 1397
FaqI	GGGAC	2 cut(s)	329, 1653
FauNDI	CATATG	1 cut(s)	1585
FbaI	TGATCA	1 cut(s)	1981
FokI	GGATG	5 cut(s)	2, 1693, 2389, 2471, 2564
FriOI	GRGCYC	3 cut(s)	203, 1908, 2566
FspBI	CTAG	6 cut(s)	1182, 1625, 1638, 1658, 2352, 2495
GlaI	GCGC	3 cut(s)	11, 269, 1495
GsaI	CCCAGC	1 cut(s)	1010
GsuI	CTGGAG	1 cut(s)	2754
HaeII	RGCGCY	2 cut(s)	13, 1497
HaeIII	GGCC	6 cut(s)	593, 1132, 1248, 1535, 2226, 2483
HapII	CCGG	1 cut(s)	2003
HgaI	GACGC	1 cut(s)	2332
HhaI	GCGC	3 cut(s)	12, 270, 1496
Hin6I	GCGC	3 cut(s)	10, 268, 1494
HinP1I	GCGC	3 cut(s)	10, 268, 1494
HincII	GTYRAC	1 cut(s)	1913
HindII	GTYRAC	1 cut(s)	1913
HindIII	AAGCTT	3 cut(s)	424, 2236, 2654
HpaII	CCGG	1 cut(s)	2003
HphI	GGTGA	4 cut(s)	1627, 1790, 1876, 2753
Hpy166II	GTNNAC	6 cut(s)	1187, 1321, 1913, 2038, 2089, 2692
Hpy8I	GTNNAC	6 cut(s)	1187, 1321, 1913, 2038, 2089, 2692
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	5 cut(s)	650, 689, 1420, 1819, 2581
HpyCH4IV	ACGT	4 cut(s)	619, 1666, 2250, 2688
HpyF10VI	GCNNNNNNNGC	8 cut(s)	215, 224, 1034, 1510, 1898, 2235, 2240, 2561
HpySE526I	ACGT	4 cut(s)	619, 1666, 2250, 2688
HspAI	GCGC	3 cut(s)	10, 268, 1494
Ksp22I	TGATCA	1 cut(s)	1981
Kzo9I	GATC	8 cut(s)	568, 928, 1378, 1925, 1981, 1996, 2335, 2611
LguI	GCTCTTC	2 cut(s)	258, 489
LmnI	GCTCC	5 cut(s)	7, 38, 175, 224, 1306
Lsp1109I	GCAGC	7 cut(s)	1061, 1129, 1214, 1387, 2014, 2267, 2685
MaeI	CTAG	6 cut(s)	1182, 1625, 1638, 1658, 2352, 2495
MaeII	ACGT	4 cut(s)	619, 1666, 2250, 2688
MaeIII	GTNAC	3 cut(s)	507, 1344, 1615
MalI	GATC	8 cut(s)	570, 930, 1380, 1927, 1983, 1998, 2337, 2613
MboI	GATC	8 cut(s)	568, 928, 1378, 1925, 1981, 1996, 2335, 2611
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	3 cut(s)	1925, 1996, 2335
MhlI	GDGCHC	6 cut(s)	203, 211, 298, 1030, 1908, 2566
MlsI	TGGCCA	1 cut(s)	1248
MluNI	TGGCCA	1 cut(s)	1248
MlyI	GAGTC	5 cut(s)	36, 316, 1288, 1827, 2458
MmeI	TCCRAC	6 cut(s)	867, 1810, 2340, 2463, 2515, 2652
Mox20I	TGGCCA	1 cut(s)	1248
Mph1103I	ATGCAT	4 cut(s)	769, 1064, 1515, 1585
MroXI	GAANNNNTTC	3 cut(s)	285, 519, 2275
MscI	TGGCCA	1 cut(s)	1248
MslI	CAYNNNNRTG	1 cut(s)	1057
Msp20I	TGGCCA	1 cut(s)	1248
MspA1I	CMGCKG	2 cut(s)	214, 1205
MspCI	CTTAAG	2 cut(s)	421, 1171
MspI	CCGG	1 cut(s)	2003
MspR9I	CCNGG	5 cut(s)	725, 933, 1621, 2665, 2733
MunI	CAATTG	1 cut(s)	795
Mva1269I	GAATGC	1 cut(s)	769
MvaI	CCWGG	5 cut(s)	725, 933, 1621, 2665, 2733
MvnI	CGCG	2 cut(s)	270, 1518
MwoI	GCNNNNNNNGC	8 cut(s)	215, 224, 1034, 1510, 1898, 2235, 2240, 2561
NdeI	CATATG	1 cut(s)	1585
NdeII	GATC	8 cut(s)	568, 928, 1378, 1925, 1981, 1996, 2335, 2611
NheI	GCTAGC	1 cut(s)	1624
NlaIV	GGNNCC	5 cut(s)	295, 1029, 1131, 1476, 2121
NmeAIII	GCCGAG	1 cut(s)	2202
NmuCI	GTSAC	1 cut(s)	1615
NsiI	ATGCAT	4 cut(s)	769, 1064, 1515, 1585
NspI	RCATGY	4 cut(s)	338, 1327, 1342, 1392
PaeI	GCATGC	1 cut(s)	1342
PagI	TCATGA	1 cut(s)	1422
PceI	AGGCCT	1 cut(s)	593
PciI	ACATGT	2 cut(s)	1323, 1388
PciSI	GCTCTTC	2 cut(s)	258, 489
PctI	GAATGC	1 cut(s)	769
PdmI	GAANNNNTTC	3 cut(s)	285, 519, 2275
PfeI	GAWTC	8 cut(s)	358, 1093, 1164, 1273, 1661, 1811, 2393, 2435
PfoI	TCCNGGA	2 cut(s)	723, 931
PinAI	ACCGGT	1 cut(s)	2002
PleI	GAGTC	5 cut(s)	35, 316, 1288, 1827, 2457
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
PpsI	GAGTC	5 cut(s)	35, 316, 1288, 1827, 2457
Ppu21I	YACGTR	1 cut(s)	620
PpuMI	RGGWCCY	1 cut(s)	2215
PscI	ACATGT	2 cut(s)	1323, 1388
PshBI	ATTAAT	3 cut(s)	812, 870, 897
Psp124BI	GAGCTC	2 cut(s)	203, 2566
Psp5II	RGGWCCY	1 cut(s)	2215
Psp6I	CCWGG	5 cut(s)	723, 931, 1619, 2663, 2731
PspCI	CACGTG	1 cut(s)	620
PspEI	GGTNACC	1 cut(s)	1615
PspFI	CCCAGC	1 cut(s)	1006
PspGI	CCWGG	5 cut(s)	723, 931, 1619, 2663, 2731
PspN4I	GGNNCC	5 cut(s)	295, 1029, 1131, 1476, 2121
PspPI	GGNCC	4 cut(s)	991, 1130, 1534, 2215
PspPPI	RGGWCCY	1 cut(s)	2215
PstNI	CAGNNNCTG	2 cut(s)	926, 2261
PsuI	RGATCY	3 cut(s)	1925, 1996, 2335
PvuII	CAGCTG	2 cut(s)	214, 1205
RsaI	GTAC	2 cut(s)	453, 1188
RsaNI	GTAC	2 cut(s)	452, 1187
RseI	CAYNNNNRTG	1 cut(s)	1057
SacI	GAGCTC	2 cut(s)	203, 2566
SapI	GCTCTTC	2 cut(s)	258, 489
Sau3AI	GATC	8 cut(s)	568, 928, 1378, 1925, 1981, 1996, 2335, 2611
Sau96I	GGNCC	4 cut(s)	991, 1130, 1534, 2215
SchI	GAGTC	5 cut(s)	36, 316, 1288, 1827, 2458
ScrFI	CCNGG	5 cut(s)	725, 933, 1621, 2665, 2733
SduI	GDGCHC	6 cut(s)	203, 211, 298, 1030, 1908, 2566
SfcI	CTRYAG	3 cut(s)	1032, 1713, 1803
SinI	GGWCC	2 cut(s)	991, 2215
SmiMI	CAYNNNNRTG	1 cut(s)	1057
SmlI	CTYRAG	8 cut(s)	421, 1171, 1307, 1360, 1382, 1469, 2369, 2474
SmoI	CTYRAG	8 cut(s)	421, 1171, 1307, 1360, 1382, 1469, 2369, 2474
SphI	GCATGC	1 cut(s)	1342
SseBI	AGGCCT	1 cut(s)	593
SsiI	CCGC	5 cut(s)	1710, 1736, 2173, 2227, 2356
SspMI	CTAG	6 cut(s)	1182, 1625, 1638, 1658, 2352, 2495
SstI	GAGCTC	2 cut(s)	203, 2566
StuI	AGGCCT	1 cut(s)	593
StyD4I	CCNGG	5 cut(s)	723, 931, 1619, 2663, 2731
StyI	CCWWGG	1 cut(s)	2626
TaiI	ACGT	4 cut(s)	622, 1669, 2253, 2691
TaqI	TCGA	2 cut(s)	289, 2649
TaqII	GACCGA	1 cut(s)	2271
TatI	WGTACW	1 cut(s)	1186
TauI	GCSGC	3 cut(s)	1739, 2176, 2229
TfiI	GAWTC	8 cut(s)	358, 1093, 1164, 1273, 1661, 1811, 2393, 2435
TscAI	CASTG	6 cut(s)	385, 1028, 1411, 1445, 1722, 2121
TseFI	GTSAC	1 cut(s)	1615
TseI	GCWGC	7 cut(s)	1049, 1142, 1202, 1400, 2027, 2255, 2698
Tsp45I	GTSAC	1 cut(s)	1615
TspDTI	ATGAA	8 cut(s)	111, 389, 1439, 1565, 1637, 1695, 1875, 2303
TspGWI	ACGGA	2 cut(s)	175, 1031
TspRI	CASTG	6 cut(s)	385, 1028, 1411, 1445, 1722, 2121
Vha464I	CTTAAG	2 cut(s)	421, 1171
VpaK11BI	GGWCC	2 cut(s)	991, 2215
VspI	ATTAAT	3 cut(s)	812, 870, 897
XagI	CCTNNNNNAGG	1 cut(s)	1891
XapI	RAATTY	5 cut(s)	493, 633, 1193, 2183, 2416
XceI	RCATGY	4 cut(s)	338, 1327, 1342, 1392
XmnI	GAANNNNTTC	3 cut(s)	285, 519, 2275
XspI	CTAG	6 cut(s)	1182, 1625, 1638, 1658, 2352, 2495
Zsp2I	ATGCAT	4 cut(s)	769, 1064, 1515, 1585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.