Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004196

Physical Location & Seq

Genomic Coordinates Forward (+)

89410996 .. 89412255

Gene Structure 1260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG671500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATAGAACCTGTTGTAGCTTTGAGCCGGTTAAAATCACAGCTAGAGAGCAGAAAGTGTTTATCAAGAGGTGCAGCAAGTGATGTTGATGCAGGGAAAGCACCTCCTCCTAAGAAACTAAAGAGATCTTCATGCTCTTTTAGCAGCCTCTCTGCACTTTCTAGTCCCACCAATTCCAAGAATCTTGATGCCCTCGCAAGCAAAGTTCCCGGAGAGGGGCCACAGGAACCAGCTCTAAACTCAATTCTACGAATCATCTTAAGGACATCTAGTGTACAAGATTTTGTTGCAGCTGATTATGTTTTTAAGAGCTTTTGTGAGAAAAATGCTGATCACCAAACAATGTTAGCGTCAACATTGATTCCTCAACCACATTCAATGACTCATGCACCCCTTGAGGAAGATGTGAACATGTCATTTGGAAGCATGCTGTTACAAGGTCTTGCCTTGAGTGAGAGTGAAGTCGATCTTGAGACATGTTGCAGAGCTGCCAGTGTTCTATCTCATGTCATGAAGGACAATATCCAGTGCAAGGTAAAGGTGTTGCATATTGAACTTGAGGCACCAACGCCATCTTTAGGTGCTTCTGAGCCTCTAATGCATCGCGTGGTAAAATACTTGGCCCTTTCCTCTTCCATGAAAAACAAAGATGGAAAGTCAATTGGAAATGCATATATTCAACCAATGCTCTTGAAAATGCTGGTGACTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005795 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009791 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045056 GO:0045184 GO:0046907 GO:0048193 GO:0048211 GO:0048278 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Uso1_p115_C Uso1_p115_head

Protein Analysis

237

Amino Acids

25.57

Weight (kDa)

8.44

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27530
fragaria_vesca	FvH4_1g06690 FvH4_1g06690 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710
malus_domestica	MD09G1023300.v1.1 MD17G1022800.v1.1
prunus_persica	Prupe.3G293500_v2.0.a1 Prupe.3G293600_v2.0.a1
pyrus_communis	pycom111g01940
rosa_chinensis	RchiOBHm_Chr2g0173241 RchiOBHm_Chr2g0173251
rosa_laevigata	RLG00000022173 RLG00000022175
rosa_multiflora	Rmu_sc0010961.1_g000008 Rmu_sc0010961.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079090
rosa_rugosa	Rorug02G0566800 Rorug02G0566900 Rorug02G0566900 Rorug02G0566900
rosa_samantha	Rh2AG646700 Rh2BG657400 Rh2CG622600 Rh2CG623100 Rh2CG623200 Rh2DG671000 Rh2DG671500 Rh2DG671600
rosa_wichuraiana	Rw2G053120 Rw2G053130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	562
AccII	CGCG	1 cut(s)	606
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	4 cut(s)	215, 216, 532, 578
AflII	CTTAAG	1 cut(s)	259
AflIII	ACRYGT	2 cut(s)	411, 476
AgsI	TTSAA	4 cut(s)	378, 554, 680, 694
AluBI	AGCT	6 cut(s)	20, 43, 233, 293, 312, 488
AluI	AGCT	6 cut(s)	20, 43, 233, 293, 312, 488
Alw26I	GTCTC	1 cut(s)	467
AoxI	GGCC	2 cut(s)	218, 621
ApeKI	GCWGC	4 cut(s)	74, 144, 290, 488
AspS9I	GGNCC	2 cut(s)	218, 622
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	562
BbvI	GCAGC	4 cut(s)	86, 156, 302, 475
BccI	CCATC	2 cut(s)	580, 644
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	4 cut(s)	44, 162, 270, 712
BfrI	CTTAAG	1 cut(s)	259
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	4 cut(s)	75, 145, 291, 489
BlsI	GCNGC	4 cut(s)	76, 146, 292, 490
Bme1390I	CCNGG	1 cut(s)	210
BmgT120I	GGNCC	2 cut(s)	218, 622
BmiI	GGNNCC	3 cut(s)	219, 228, 564
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	3 cut(s)	79, 178, 610
BpuEI	CTTGAG	4 cut(s)	416, 469, 491, 578
BpuMI	CCSGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	4 cut(s)	215, 216, 532, 578
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	492, 526
BseLI	CCNNNNNNNGG	4 cut(s)	215, 216, 532, 578
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	2 cut(s)	492, 526
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	86, 156, 302, 475
BsgI	GTGCAG	2 cut(s)	93, 138
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	2 cut(s)	220, 623
BshNI	GGYRCC	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	28, 210
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	4 cut(s)	215, 216, 532, 578
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	220, 623
Bsp1407I	TGTACA	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	125, 331, 466
BspANI	GGCC	2 cut(s)	220, 623
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	606
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	3 cut(s)	219, 228, 564
BspT107I	GGYRCC	1 cut(s)	562
BspTI	CTTAAG	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	492, 526
BssAI	RCCGGY	1 cut(s)	27
BssMI	GATC	3 cut(s)	125, 331, 466
Bst6I	CTCTTC	1 cut(s)	637
BstAFI	CTTAAG	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	199, 428
BstDEI	CTNAG	2 cut(s)	111, 588
BstFNI	CGCG	1 cut(s)	606
BstKTI	GATC	3 cut(s)	128, 334, 469
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	3 cut(s)	125, 331, 466
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 141, 598
BstNSI	RCATGY	3 cut(s)	415, 430, 480
BstSCI	CCNGG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	4 cut(s)	86, 156, 302, 475
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	220, 623
BtgZI	GCGATG	1 cut(s)	587
BtsIMutI	CAGTG	2 cut(s)	499, 533
Cac8I	GCNNGC	2 cut(s)	199, 428
CciI	TCATGA	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	218, 622
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	8 cut(s)	132, 386, 412, 427, 477, 506, 511, 637
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	2 cut(s)	111, 588
DpnI	GATC	3 cut(s)	127, 333, 468
DpnII	GATC	3 cut(s)	125, 331, 466
Eam1104I	CTCTTC	1 cut(s)	637
EarI	CTCTTC	1 cut(s)	637
EcoT22I	ATGCAT	2 cut(s)	603, 673
FaeI	CATG	8 cut(s)	135, 389, 415, 430, 480, 509, 514, 640
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	8 cut(s)	131, 385, 411, 426, 476, 505, 510, 636
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	75, 145, 291, 489
Fsp4HI	GCNGC	4 cut(s)	75, 145, 291, 489
FspBI	CTAG	4 cut(s)	44, 162, 270, 712
GluI	GCNGC	4 cut(s)	75, 145, 291, 489
HaeIII	GGCC	2 cut(s)	220, 623
HapII	CCGG	2 cut(s)	28, 210
HgaI	GACGC	1 cut(s)	339
Hin1II	CATG	8 cut(s)	135, 389, 415, 430, 480, 509, 514, 640
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	4 cut(s)	181, 252, 361, 382
HpaII	CCGG	2 cut(s)	28, 210
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	3 cut(s)	275, 354, 409
Hpy188I	TCNGA	1 cut(s)	589
Hpy188III	TCNNGA	5 cut(s)	66, 185, 470, 511, 691
Hpy8I	GTNNAC	3 cut(s)	275, 354, 409
HpyAV	CCTTC	1 cut(s)	508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 141, 598
HpyF3I	CTNAG	2 cut(s)	111, 588
Hsp92II	CATG	8 cut(s)	135, 389, 415, 430, 480, 509, 514, 640
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	125, 331, 466
LpnPI	CCDG	9 cut(s)	24, 41, 78, 209, 223, 243, 505, 539, 686
Lsp1109I	GCAGC	4 cut(s)	86, 156, 302, 475
LweI	GCATC	3 cut(s)	79, 178, 610
MaeI	CTAG	4 cut(s)	44, 162, 270, 712
MaeIII	GTNAC	2 cut(s)	432, 703
MalI	GATC	3 cut(s)	127, 333, 468
MboI	GATC	3 cut(s)	125, 331, 466
MboII	GAAGA	3 cut(s)	120, 413, 624
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	3 cut(s)	172, 243, 660
MlyI	GAGTC	1 cut(s)	376
Mph1103I	ATGCAT	2 cut(s)	603, 673
MseI	TTAA	3 cut(s)	32, 260, 306
MspA1I	CMGCKG	1 cut(s)	293
MspCI	CTTAAG	1 cut(s)	259
MspI	CCGG	2 cut(s)	28, 210
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	660
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	3 cut(s)	98, 141, 598
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	125, 331, 466
NlaIII	CATG	8 cut(s)	135, 389, 415, 430, 480, 509, 514, 640
NlaIV	GGNNCC	3 cut(s)	219, 228, 564
NmuCI	GTSAC	1 cut(s)	703
NsiI	ATGCAT	2 cut(s)	603, 673
NspI	RCATGY	3 cut(s)	415, 430, 480
PaeI	GCATGC	1 cut(s)	430
PagI	TCATGA	1 cut(s)	510
PciI	ACATGT	2 cut(s)	411, 476
PfeI	GAWTC	3 cut(s)	181, 252, 361
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	4 cut(s)	76, 146, 292, 490
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PscI	ACATGT	2 cut(s)	411, 476
PspN4I	GGNNCC	3 cut(s)	219, 228, 564
PspPI	GGNCC	2 cut(s)	218, 622
PsuI	RGATCY	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	32, 260, 306
SatI	GCNGC	4 cut(s)	75, 145, 291, 489
Sau3AI	GATC	3 cut(s)	125, 331, 466
Sau96I	GGNCC	2 cut(s)	218, 622
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	210
SfaNI	GCATC	3 cut(s)	79, 178, 610
SmlI	CTYRAG	5 cut(s)	259, 395, 448, 470, 557
SmoI	CTYRAG	5 cut(s)	259, 395, 448, 470, 557
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	3 cut(s)	172, 243, 660
SspMI	CTAG	4 cut(s)	44, 162, 270, 712
StyD4I	CCNGG	1 cut(s)	208
TaqI	TCGA	1 cut(s)	465
TasI	AATT	3 cut(s)	172, 243, 660
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	3 cut(s)	181, 252, 361
Tru1I	TTAA	3 cut(s)	32, 260, 306
Tru9I	TTAA	3 cut(s)	32, 260, 306
TscAI	CASTG	2 cut(s)	499, 533
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	4 cut(s)	74, 144, 290, 488
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	3 cut(s)	120, 527, 653
TspRI	CASTG	2 cut(s)	499, 533
Vha464I	CTTAAG	1 cut(s)	259
XceI	RCATGY	3 cut(s)	415, 430, 480
XspI	CTAG	4 cut(s)	44, 162, 270, 712
Zsp2I	ATGCAT	2 cut(s)	603, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.