Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004196

Physical Location & Seq

Genomic Coordinates Forward (+)

79691417 .. 79692488

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG623200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAGAAAAAACTTCCTTTTCACCTCTGCAAGGTCTGCTGAGCCCCGTCAACAATTAACCAGATCTGCTTCTGCTGGTATGGTAGAGCCTGAAGATGTTGATGGGAACAATTTATCTGATCAGAAAGATGAGGATCTACCGGTTCTCTCCTCAATCTTTGATGCTGCATTTGTAAACCTTGTTAAGAGTTTAGAGGCAAACATCAGAGAAAAAATCGTTGAGGTTTACAGTAATCCAAAGAGCAAGGTGGCAGTGATGCCAGCAGAATTGGAACAAAAGAGTGGGGAAAGTGATGGAGAGTATGTTAAGCGGCTGAAAGAATTTGTGGAAAAGCAGTGCTCTGAGATACAGGACCTCCTTGGCCGCAATGCAAGCTTGGCTGAGGACGTGGCAGCAACTGGTGGGGGAAGTCATTCTGAGTCTGAGCAAGGCACAGGCTCAGATAGAGTTCATGTAGAGACACTTAGACGAGATCTTCAAGAAGCATCCAGGCGGTTGGAGTTTCTCAAGGCAGAGAAAGCCAAGATTGAATCTGAGGCATCCATGTATAAAAATTTAGCTGGCAAGATGGAATCCGACCTGAAGAGTCTATCGGATGCTTACAACAGTCTTGAGCAGGCCAATTTCCAACTAGAAAAGGAGGTAAGAGGTCAAAAGAGTGTGGGGTCTTCGGCCTCTCCAGATGTGGATGCAATTAGAGCTCAGGCAAGGGAAGAAGCTCAGAAGGAGAGCGAGGCAGAACTGAATGATCTTCTCGTGTGCCTTGGACAAGAACAGAGCAAGGTCGAAAAGCTTAGTGCCAGGTCGTTGGAGTTGGGGGAGGACGTGGACAAGCTGCTCGAAGATATCGGAGGTGATATGGGATTGCCTGGAGATGGTGAAGAGGTGGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005795 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009791 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045056 GO:0045184 GO:0046907 GO:0048193 GO:0048211 GO:0048278 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Uso1_p115_C Uso1_p115_head

Protein Analysis

298

Amino Acids

32.66

Weight (kDa)

4.59

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Uso1_p115_C	PF04871	172 - 295	8.8e-28	Uso1 / p115 like vesicle tethering protein, C terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27530
fragaria_vesca	FvH4_1g06690 FvH4_1g06690 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710
malus_domestica	MD09G1023300.v1.1 MD17G1022800.v1.1
prunus_persica	Prupe.3G293500_v2.0.a1 Prupe.3G293600_v2.0.a1
pyrus_communis	pycom111g01940
rosa_chinensis	RchiOBHm_Chr2g0173241 RchiOBHm_Chr2g0173251
rosa_laevigata	RLG00000022173 RLG00000022175
rosa_multiflora	Rmu_sc0010961.1_g000008 Rmu_sc0010961.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079090
rosa_rugosa	Rorug02G0566800 Rorug02G0566900 Rorug02G0566900 Rorug02G0566900
rosa_samantha	Rh2AG646700 Rh2BG657400 Rh2CG622600 Rh2CG623100 Rh2CG623200 Rh2DG671000 Rh2DG671500 Rh2DG671600
rosa_wichuraiana	Rw2G053120 Rw2G053130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	310, 364, 493
AclWI	GGATC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	320, 553
AcuI	CTGAAG	2 cut(s)	111, 602
AfiI	CCNNNNNNNGG	2 cut(s)	30, 875
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	479, 530
AjiI	CACGTC	2 cut(s)	388, 826
AjnI	CCWGG	3 cut(s)	488, 800, 868
AluBI	AGCT	6 cut(s)	375, 560, 701, 719, 793, 835
AluI	AGCT	6 cut(s)	375, 560, 701, 719, 793, 835
Alw21I	GWGCWC	2 cut(s)	341, 703
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	141
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	3 cut(s)	361, 618, 672
ApeKI	GCWGC	3 cut(s)	164, 392, 835
ApoI	RAATTY	2 cut(s)	320, 553
AsiGI	ACCGGT	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	3 cut(s)	13, 866, 890
AvaII	GGWCC	1 cut(s)	352
BanII	GRGCYC	2 cut(s)	45, 703
BauI	CACGAG	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	341, 703
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	151, 404, 822
BccI	CCATC	4 cut(s)	95, 287, 562, 869
BciT130I	CCWGG	3 cut(s)	490, 802, 870
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	1 cut(s)	632
BglII	AGATCT	2 cut(s)	62, 472
BisI	GCNGC	5 cut(s)	165, 311, 364, 393, 836
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	5 cut(s)	166, 312, 365, 394, 837
Bme1390I	CCNGG	3 cut(s)	490, 802, 870
Bme18I	GGWCC	1 cut(s)	352
BmgBI	CACGTC	2 cut(s)	388, 826
BmgT120I	GGNCC	1 cut(s)	352
BmrFI	CCNGG	3 cut(s)	490, 802, 870
BmsI	GCATC	6 cut(s)	151, 246, 494, 548, 586, 679
BpiI	GAAGAC	1 cut(s)	660
BpmI	CTGGAG	2 cut(s)	663, 891
Bpu10I	CCTNAGC	2 cut(s)	381, 702
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	491, 632
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	358, 763
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 339, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 875
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	3 cut(s)	490, 802, 870
BseDI	CCNNGG	2 cut(s)	358, 763
BseGI	GGATG	4 cut(s)	485, 539, 601, 694
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	30, 875
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	9 cut(s)	30, 333, 372, 408, 414, 453, 525, 716, 734
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	151, 404, 822
BshFI	GGCC	3 cut(s)	363, 620, 674
BshTI	ACCGGT	1 cut(s)	139
BsiHKAI	GWGCWC	2 cut(s)	341, 703
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	30, 875
BsmAI	GTCTC	1 cut(s)	452
BsnI	GGCC	3 cut(s)	363, 620, 674
Bsp1286I	GDGCHC	3 cut(s)	45, 341, 703
Bsp143I	GATC	5 cut(s)	62, 118, 133, 472, 748
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	3 cut(s)	310, 364, 493
BspANI	GGCC	3 cut(s)	363, 620, 674
BspCNI	CTCAG	9 cut(s)	31, 334, 373, 409, 415, 452, 526, 715, 733
BspPI	GGATC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	358, 763
BssMI	GATC	5 cut(s)	62, 118, 133, 472, 748
BssSI	CACGAG	1 cut(s)	755
BssT1I	CCWWGG	2 cut(s)	358, 763
Bst2BI	CACGAG	1 cut(s)	755
Bst2UI	CCWGG	3 cut(s)	490, 802, 870
Bst4CI	ACNGT	2 cut(s)	230, 608
Bst6I	CTCTTC	2 cut(s)	578, 876
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	4 cut(s)	261, 373, 562, 618
BstENI	CCTNNNNNAGG	1 cut(s)	28
BstF5I	GGATG	4 cut(s)	485, 539, 601, 694
BstKTI	GATC	5 cut(s)	65, 121, 136, 475, 751
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	5 cut(s)	62, 118, 133, 472, 748
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 372, 377, 518, 698
BstNI	CCWGG	3 cut(s)	490, 802, 870
BstSCI	CCNGG	3 cut(s)	488, 800, 868
BstV1I	GCAGC	3 cut(s)	151, 404, 822
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	3 cut(s)	62, 133, 472
BstXI	CCANNNNNNTGG	2 cut(s)	496, 808
BstYI	RGATCY	3 cut(s)	62, 133, 472
BsuRI	GGCC	3 cut(s)	363, 620, 674
BtrI	CACGTC	2 cut(s)	388, 826
BtsCI	GGATG	4 cut(s)	485, 539, 601, 694
BtsI	GCAGTG	2 cut(s)	258, 341
BtsIMutI	CAGTG	2 cut(s)	258, 341
Cac8I	GCNNGC	4 cut(s)	261, 373, 562, 618
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	352
CspAI	ACCGGT	1 cut(s)	139
CviAII	CATG	2 cut(s)	452, 544
DpnI	GATC	5 cut(s)	64, 120, 135, 474, 750
DpnII	GATC	5 cut(s)	62, 118, 133, 472, 748
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	2 cut(s)	578, 876
EarI	CTCTTC	2 cut(s)	578, 876
Ecl136II	GAGCTC	1 cut(s)	701
Eco130I	CCWWGG	2 cut(s)	358, 763
Eco24I	GRGCYC	2 cut(s)	45, 703
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	701
Eco57I	CTGAAG	2 cut(s)	111, 602
EcoICRI	GAGCTC	1 cut(s)	701
EcoNI	CCTNNNNNAGG	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	3 cut(s)	488, 800, 868
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	2 cut(s)	358, 763
EcoT38I	GRGCYC	2 cut(s)	45, 703
ErhI	CCWWGG	2 cut(s)	358, 763
FaeI	CATG	2 cut(s)	455, 547
FaiI	YATR	6 cut(s)	80, 303, 453, 545, 549, 860
FatI	CATG	2 cut(s)	451, 543
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	5 cut(s)	165, 311, 364, 393, 836
FokI	GGATG	4 cut(s)	472, 526, 608, 701
FriOI	GRGCYC	2 cut(s)	45, 703
Fsp4HI	GCNGC	5 cut(s)	165, 311, 364, 393, 836
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	5 cut(s)	165, 311, 364, 393, 836
GsuI	CTGGAG	2 cut(s)	663, 891
HaeIII	GGCC	3 cut(s)	363, 620, 674
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	2 cut(s)	455, 547
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HindIII	AAGCTT	2 cut(s)	373, 791
HinfI	GANTC	4 cut(s)	419, 530, 572, 586
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	3 cut(s)	13, 866, 890
Hpy166II	GTNNAC	4 cut(s)	50, 175, 226, 829
Hpy188III	TCNNGA	3 cut(s)	479, 611, 680
Hpy8I	GTNNAC	4 cut(s)	50, 175, 226, 829
HpyAV	CCTTC	1 cut(s)	718
HpyCH4III	ACNGT	2 cut(s)	230, 608
HpyCH4IV	ACGT	2 cut(s)	387, 825
HpyCH4V	TGCA	4 cut(s)	29, 167, 371, 692
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 372, 377, 518, 698
HpySE526I	ACGT	2 cut(s)	387, 825
Hsp92II	CATG	2 cut(s)	455, 547
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	62, 118, 133, 472, 748
Lsp1109I	GCAGC	3 cut(s)	151, 404, 822
LweI	GCATC	6 cut(s)	151, 246, 494, 548, 586, 679
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	2 cut(s)	387, 825
MalI	GATC	5 cut(s)	64, 120, 135, 474, 750
MboI	GATC	5 cut(s)	62, 118, 133, 472, 748
MboII	GAAGA	8 cut(s)	104, 467, 595, 660, 725, 743, 854, 893
MflI	RGATCY	3 cut(s)	62, 133, 472
MhlI	GDGCHC	3 cut(s)	45, 341, 703
MluCI	AATT	7 cut(s)	53, 109, 266, 320, 553, 622, 693
MlyI	GAGTC	2 cut(s)	428, 595
MmeI	TCCRAC	4 cut(s)	477, 600, 652, 789
MroXI	GAANNNNTTC	1 cut(s)	412
MseI	TTAA	3 cut(s)	56, 183, 306
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	3 cut(s)	490, 802, 870
MvaI	CCWGG	3 cut(s)	490, 802, 870
MwoI	GCNNNNNNNGC	5 cut(s)	35, 372, 377, 518, 698
NdeII	GATC	5 cut(s)	62, 118, 133, 472, 748
NlaIII	CATG	2 cut(s)	455, 547
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	530, 572
PinAI	ACCGGT	1 cut(s)	139
PkrI	GCNGC	5 cut(s)	166, 312, 365, 394, 837
PleI	GAGTC	2 cut(s)	427, 594
PpsI	GAGTC	2 cut(s)	427, 594
PpuMI	RGGWCCY	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	703
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	3 cut(s)	488, 800, 868
PspGI	CCWGG	3 cut(s)	488, 800, 868
PspPI	GGNCC	1 cut(s)	352
PspPPI	RGGWCCY	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	3 cut(s)	62, 133, 472
SacI	GAGCTC	1 cut(s)	703
SaqAI	TTAA	3 cut(s)	56, 183, 306
SatI	GCNGC	5 cut(s)	165, 311, 364, 393, 836
Sau3AI	GATC	5 cut(s)	62, 118, 133, 472, 748
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	2 cut(s)	428, 595
ScrFI	CCNGG	3 cut(s)	490, 802, 870
SduI	GDGCHC	3 cut(s)	45, 341, 703
SfaNI	GCATC	6 cut(s)	151, 246, 494, 548, 586, 679
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	506, 611
SmoI	CTYRAG	2 cut(s)	506, 611
Sse9I	AATT	7 cut(s)	53, 109, 266, 320, 553, 622, 693
SsiI	CCGC	3 cut(s)	310, 364, 493
SspMI	CTAG	1 cut(s)	632
SstI	GAGCTC	1 cut(s)	703
StyD4I	CCNGG	3 cut(s)	488, 800, 868
StyI	CCWWGG	2 cut(s)	358, 763
TaaI	ACNGT	2 cut(s)	230, 608
TaiI	ACGT	2 cut(s)	390, 828
TaqI	TCGA	2 cut(s)	786, 840
TasI	AATT	7 cut(s)	53, 109, 266, 320, 553, 622, 693
TauI	GCSGC	2 cut(s)	313, 366
TfiI	GAWTC	2 cut(s)	530, 572
Tru1I	TTAA	3 cut(s)	56, 183, 306
Tru9I	TTAA	3 cut(s)	56, 183, 306
TscAI	CASTG	2 cut(s)	258, 341
TseI	GCWGC	3 cut(s)	164, 392, 835
TspDTI	ATGAA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	258, 341
VpaK11BI	GGWCC	1 cut(s)	352
XagI	CCTNNNNNAGG	1 cut(s)	28
XapI	RAATTY	2 cut(s)	320, 553
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.