Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004196

Physical Location & Seq

Genomic Coordinates Reverse (-)

69138877 .. 69140286

Gene Structure 1410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0566800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGCAGAAGGAAAGCGCCTCTAAACCGTTCAAATGCCTTCTTTCCACAATGTTATGTGCTATTCTCCTTGTCAGCCCCCTTACAGTTTTCATTTTCGGCTTCAATAGTTCGTATCCACAATGCATCTTTGCTACTAACTCCAGCATCTCTCTCTCCCATGGCCTAATTGCTTTACCTGATTCGCTGCGTAGCGAAATCTCTCATTTGCAGATCAAACTGGGTTTTTTACTGGAGCAGCTGCATGATGAAACTTCAGAATCAAAAGTGATCGCAAAGTTTTCAGAGCAGGTACTTTACATTGCCATTTCTTTGGACAAAATTGCTGTTAGCTTATCAGAGAGCAGTAAGAATTCTCCCTCTGCTAATAATGAGGTAAGCAATGTGGATGAAGATTTCAGTGATCCTGAAGAAGGTGAAGCCGAAGAACAGTTTATGAGTGGGAATGTCTTCAAATCAGGTGAGATTCGTAGTTACATTTCACCAAAACCAAACAGGCTAGTTGGGAAGAAAAATTTTCTTGGGGTGGATGCACTAACTCCATCAATTGGGTTGGCTTGTGCCAAAATGGCCTCCAACTTGGACCGGTTTATGAGTTACAAGGTTCACAGTGCGTGTCCAGATGATTCGCAAATAGCTCAGAAGCTTATAGTTCACGGTTGTGATCCATTGCCAAGAAGAAGATGCTTCACAAAATCACCTCCACACTACACTAAGCCATTTCCTATAAACGCCTCCCTTTGGACTCAACCTAGTGATGCCAACATCTTATGGAACAATTACAAGTGCAAAGACTACTCTTGCCTTGTTTCTAAAGAAACCGCAGACAGAAGAGGGTTCTTCAAATGCTCAAGCTGTTTCAACATTTCACAACGTGGGTGGAATGTTCCTACGAATGAGTCTGTATCAGCAGAGTTCACCATTGATGAAGTCCTTAGCTTAAAGCCGGGGGAGATAAGAATCGGCCTAGACTATAGCCCTACAACTGGTAATTTTGCTGCTGTGATGAGGGAAAAAAATGTCACCATTGCATCAAGTACACTAAACTTAGGTGCTCCTTTCAATGAGGTCATAGCCTTAAGAGGCCTTCTTCCTCTTTACACATCAGTTGGCTCAAGATTGCCTTTCTTTGACAATACCCTTGACATTATCCATTCCACTTTGTTCTTGGATGGCTGGATAGGAATTGAACTTCTTCAATTTGTTCTGTTTGATTGGGATCGCGTCCTTCGGCCAAAGGGTCTTCTTTGGATAGACAGGTTCTTCTGTCATAAAGAGGATATGAAGCTGTATTTGGAGGAGTTTAACAGGTTAGGCTACAAGCCACTACTATGGAGGGTAGTACCCAAGAATGATAAGCTTGGAGATGAGTTCTTCTTCTCAGCTGTATTGGAGAAGCCAATTAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005795 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009791 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045056 GO:0045184 GO:0046907 GO:0048193 GO:0048211 GO:0048278 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Uso1_p115_C Uso1_p115_head

Protein Analysis

469

Amino Acids

52.64

Weight (kDa)

6.29

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27530
fragaria_vesca	FvH4_1g06690 FvH4_1g06690 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710
malus_domestica	MD09G1023300.v1.1 MD17G1022800.v1.1
prunus_persica	Prupe.3G293500_v2.0.a1 Prupe.3G293600_v2.0.a1
pyrus_communis	pycom111g01940
rosa_chinensis	RchiOBHm_Chr2g0173241 RchiOBHm_Chr2g0173251
rosa_laevigata	RLG00000022173 RLG00000022175
rosa_multiflora	Rmu_sc0010961.1_g000008 Rmu_sc0010961.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079090
rosa_rugosa	Rorug02G0566800 Rorug02G0566900 Rorug02G0566900 Rorug02G0566900
rosa_samantha	Rh2AG646700 Rh2BG657400 Rh2CG622600 Rh2CG623100 Rh2CG623200 Rh2DG671000 Rh2DG671500 Rh2DG671600
rosa_wichuraiana	Rw2G053120 Rw2G053130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	545
AccII	CGCG	1 cut(s)	1221
AciI	CCGC	1 cut(s)	819
AclWI	GGATC	3 cut(s)	395, 656, 1224
AcoI	YGGCCR	1 cut(s)	1229
AcsI	RAATTY	2 cut(s)	349, 511
AcuI	CTGAAG	2 cut(s)	237, 426
AdeI	CACNNNGTG	1 cut(s)	872
AfaI	GTAC	3 cut(s)	291, 1036, 1341
AfiI	CCNNNNNNNGG	5 cut(s)	410, 545, 738, 983, 1403
AflII	CTTAAG	1 cut(s)	1075
AgeI	ACCGGT	1 cut(s)	582
AgsI	TTSAA	8 cut(s)	31, 103, 451, 841, 859, 1060, 1187, 1196
AjuI	GAANNNNNNNTTGG	2 cut(s)	1274, 1306
AleI	CACNNNNGTG	1 cut(s)	657
AluBI	AGCT	9 cut(s)	238, 330, 635, 643, 852, 936, 1285, 1357, 1382
AluI	AGCT	9 cut(s)	238, 330, 635, 643, 852, 936, 1285, 1357, 1382
Alw21I	GWGCWC	1 cut(s)	1054
AlwI	GGATC	3 cut(s)	395, 656, 1224
AoxI	GGCC	5 cut(s)	160, 567, 961, 1081, 1229
ApeKI	GCWGC	4 cut(s)	184, 235, 238, 995
ApoI	RAATTY	2 cut(s)	349, 511
AsiGI	ACCGGT	1 cut(s)	582
Asp700I	GAANNNNTTC	2 cut(s)	446, 1191
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	580
AsuC2I	CCSGG	1 cut(s)	945
AsuHPI	GGTGA	6 cut(s)	425, 470, 471, 687, 907, 1012
AvaII	GGWCC	1 cut(s)	580
BbsI	GAAGAC	2 cut(s)	439, 1232
Bbv12I	GWGCWC	1 cut(s)	1054
BbvI	GCAGC	4 cut(s)	171, 225, 247, 982
BccI	CCATC	2 cut(s)	547, 1163
BciVI	GTATCC	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	945
BfaI	CTAG	3 cut(s)	497, 750, 965
BfmI	CTRYAG	1 cut(s)	970
BfoI	RGCGCY	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	1075
BfuAI	ACCTGC	1 cut(s)	277
BfuI	GTATCC	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	566
BisI	GCNGC	4 cut(s)	185, 236, 239, 996
BlsI	GCNGC	4 cut(s)	186, 237, 240, 997
Bme1390I	CCNGG	1 cut(s)	945
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	580
BmrFI	CCNGG	1 cut(s)	945
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	6 cut(s)	132, 153, 517, 671, 745, 1037
BmuI	ACTGGG	1 cut(s)	227
BpiI	GAAGAC	2 cut(s)	439, 1232
BpmI	CTGGAG	2 cut(s)	124, 251
Bpu10I	CCTNAGC	1 cut(s)	932
BpuEI	CTTGAG	2 cut(s)	832, 1096
BpuMI	CCSGG	1 cut(s)	945
BsaBI	GATNNNNATC	2 cut(s)	956, 1215
BsaJI	CCNNGG	2 cut(s)	157, 944
BsaWI	WCCGGW	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	5 cut(s)	410, 545, 738, 983, 1403
Bse118I	RCCGGY	1 cut(s)	582
Bse1I	ACTGG	3 cut(s)	222, 234, 988
Bse3DI	GCAATG	4 cut(s)	297, 385, 665, 1023
Bse8I	GATNNNNATC	2 cut(s)	956, 1215
BseDI	CCNNGG	2 cut(s)	157, 944
BseGI	GGATG	3 cut(s)	391, 532, 1174
BseJI	GATNNNNATC	2 cut(s)	956, 1215
BseLI	CCNNNNNNNGG	5 cut(s)	410, 545, 738, 983, 1403
BseMI	GCAATG	4 cut(s)	297, 385, 665, 1023
BseMII	CTCAG	2 cut(s)	650, 1392
BseNI	ACTGG	3 cut(s)	222, 234, 988
BseRI	GAGGAG	1 cut(s)	1310
BseXI	GCAGC	4 cut(s)	171, 225, 247, 982
Bsh1236I	CGCG	1 cut(s)	1221
BshFI	GGCC	5 cut(s)	162, 569, 963, 1083, 1231
BshTI	ACCGGT	1 cut(s)	582
BsiHKAI	GWGCWC	1 cut(s)	1054
BsiSI	CCGG	2 cut(s)	583, 944
BslI	CCNNNNNNNGG	5 cut(s)	410, 545, 738, 983, 1403
BsnI	GGCC	5 cut(s)	162, 569, 963, 1083, 1231
Bsp1286I	GDGCHC	1 cut(s)	1054
Bsp143I	GATC	5 cut(s)	210, 267, 400, 661, 1216
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	1 cut(s)	819
BspANI	GGCC	5 cut(s)	162, 569, 963, 1083, 1231
BspCNI	CTCAG	2 cut(s)	649, 1391
BspFNI	CGCG	1 cut(s)	1221
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	3 cut(s)	395, 656, 1224
BspTI	CTTAAG	1 cut(s)	1075
BsrDI	GCAATG	4 cut(s)	297, 385, 665, 1023
BsrFI	RCCGGY	1 cut(s)	582
BsrI	ACTGG	3 cut(s)	222, 234, 988
BssAI	RCCGGY	1 cut(s)	582
BssECI	CCNNGG	2 cut(s)	157, 944
BssMI	GATC	5 cut(s)	210, 267, 400, 661, 1216
BssT1I	CCWWGG	1 cut(s)	157
Bst4CI	ACNGT	5 cut(s)	27, 85, 429, 608, 656
Bst6I	CTCTTC	1 cut(s)	823
BstAFI	CTTAAG	1 cut(s)	1075
BstDEI	CTNAG	5 cut(s)	636, 711, 932, 1045, 1378
BstDSI	CCRYGG	1 cut(s)	157
BstENI	CCTNNNNNAGG	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	391, 532, 1174
BstFNI	CGCG	1 cut(s)	1221
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	5 cut(s)	213, 270, 403, 664, 1219
BstMBI	GATC	5 cut(s)	210, 267, 400, 661, 1216
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	943
BstSFI	CTRYAG	1 cut(s)	970
BstUI	CGCG	1 cut(s)	1221
BstV1I	GCAGC	4 cut(s)	171, 225, 247, 982
BstV2I	GAAGAC	2 cut(s)	439, 1232
BstXI	CCANNNNNNTGG	2 cut(s)	310, 1329
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	5 cut(s)	162, 569, 963, 1083, 1231
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	391, 532, 1174
BtsIMutI	CAGTG	2 cut(s)	403, 613
BveI	ACCTGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	582
Cfr13I	GGNCC	1 cut(s)	580
CseI	GACGC	1 cut(s)	1210
Csp6I	GTAC	3 cut(s)	290, 1035, 1340
CspAI	ACCGGT	1 cut(s)	582
CspCI	CAANNNNNGTGG	2 cut(s)	857, 892
CviAII	CATG	2 cut(s)	158, 242
CviQI	GTAC	3 cut(s)	290, 1035, 1340
DdeI	CTNAG	5 cut(s)	636, 711, 932, 1045, 1378
DpnI	GATC	5 cut(s)	212, 269, 402, 663, 1218
DpnII	GATC	5 cut(s)	210, 267, 400, 661, 1216
DraIII	CACNNNGTG	1 cut(s)	872
EaeI	YGGCCR	1 cut(s)	1229
Eam1104I	CTCTTC	1 cut(s)	823
EarI	CTCTTC	1 cut(s)	823
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	1083
Eco47I	GGWCC	1 cut(s)	580
Eco57I	CTGAAG	2 cut(s)	237, 426
EcoNI	CCTNNNNNAGG	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	2 cut(s)	161, 245
FalI	AAGNNNNNCTT	2 cut(s)	1105, 1137
FatI	CATG	2 cut(s)	157, 241
Fnu4HI	GCNGC	4 cut(s)	185, 236, 239, 996
FokI	GGATG	3 cut(s)	398, 539, 1181
Fsp4HI	GCNGC	4 cut(s)	185, 236, 239, 996
FspBI	CTAG	3 cut(s)	497, 750, 965
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	4 cut(s)	185, 236, 239, 996
GsuI	CTGGAG	2 cut(s)	124, 251
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	5 cut(s)	162, 569, 963, 1083, 1231
HapII	CCGG	2 cut(s)	583, 944
HgaI	GACGC	1 cut(s)	1210
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	161, 245
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	2 cut(s)	641, 1355
HinfI	GANTC	7 cut(s)	179, 257, 463, 623, 742, 896, 957
HpaII	CCGG	2 cut(s)	583, 944
HphI	GGTGA	6 cut(s)	425, 470, 471, 687, 907, 1012
Hpy166II	GTNNAC	4 cut(s)	604, 652, 915, 1037
Hpy188I	TCNGA	4 cut(s)	256, 283, 337, 639
Hpy188III	TCNNGA	3 cut(s)	404, 617, 1113
Hpy8I	GTNNAC	4 cut(s)	604, 652, 915, 1037
HpyAV	CCTTC	4 cut(s)	47, 404, 1094, 1235
HpyCH4III	ACNGT	5 cut(s)	27, 85, 429, 608, 656
HpyCH4IV	ACGT	1 cut(s)	871
HpyCH4V	TGCA	7 cut(s)	4, 123, 208, 241, 530, 786, 1028
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	5 cut(s)	636, 711, 932, 1045, 1378
HpySE526I	ACGT	1 cut(s)	871
Hsp92II	CATG	2 cut(s)	161, 245
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	210, 267, 400, 661, 1216
LmnI	GCTCC	2 cut(s)	232, 1057
Lsp1109I	GCAGC	4 cut(s)	171, 225, 247, 982
LweI	GCATC	6 cut(s)	132, 153, 517, 671, 745, 1037
MaeI	CTAG	3 cut(s)	497, 750, 965
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	3 cut(s)	470, 593, 1018
MalI	GATC	5 cut(s)	212, 269, 402, 663, 1218
MboI	GATC	5 cut(s)	210, 267, 400, 661, 1216
MfeI	CAATTG	1 cut(s)	543
MhlI	GDGCHC	1 cut(s)	1054
MlyI	GAGTC	2 cut(s)	736, 905
MmeI	TCCRAC	1 cut(s)	597
Mph1103I	ATGCAT	1 cut(s)	125
MroXI	GAANNNNTTC	2 cut(s)	446, 1191
MseI	TTAA	3 cut(s)	938, 1076, 1302
MslI	CAYNNNNRTG	2 cut(s)	657, 1327
MspA1I	CMGCKG	2 cut(s)	238, 1382
MspCI	CTTAAG	1 cut(s)	1075
MspI	CCGG	2 cut(s)	583, 944
MspR9I	CCNGG	1 cut(s)	945
MunI	CAATTG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	1221
MwoI	GCNNNNNNNGC	1 cut(s)	566
NciI	CCSGG	1 cut(s)	945
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	5 cut(s)	210, 267, 400, 661, 1216
NlaIII	CATG	2 cut(s)	161, 245
NmuCI	GTSAC	1 cut(s)	1018
NsiI	ATGCAT	1 cut(s)	125
OliI	CACNNNNGTG	1 cut(s)	657
PceI	AGGCCT	1 cut(s)	1083
PdmI	GAANNNNTTC	2 cut(s)	446, 1191
PfeI	GAWTC	5 cut(s)	179, 257, 463, 623, 957
PflMI	CCANNNNNTGG	1 cut(s)	545
PinAI	ACCGGT	1 cut(s)	582
PkrI	GCNGC	4 cut(s)	186, 237, 240, 997
PleI	GAGTC	2 cut(s)	736, 904
PpsI	GAGTC	2 cut(s)	736, 904
PspPI	GGNCC	1 cut(s)	580
PvuII	CAGCTG	2 cut(s)	238, 1382
RsaI	GTAC	3 cut(s)	291, 1036, 1341
RsaNI	GTAC	3 cut(s)	290, 1035, 1340
RseI	CAYNNNNRTG	2 cut(s)	657, 1327
SaqAI	TTAA	3 cut(s)	938, 1076, 1302
SatI	GCNGC	4 cut(s)	185, 236, 239, 996
Sau3AI	GATC	5 cut(s)	210, 267, 400, 661, 1216
Sau96I	GGNCC	1 cut(s)	580
SchI	GAGTC	2 cut(s)	736, 905
ScrFI	CCNGG	1 cut(s)	945
SduI	GDGCHC	1 cut(s)	1054
SfaNI	GCATC	6 cut(s)	132, 153, 517, 671, 745, 1037
SfcI	CTRYAG	1 cut(s)	970
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	2 cut(s)	657, 1327
SmlI	CTYRAG	3 cut(s)	847, 1075, 1111
SmoI	CTYRAG	3 cut(s)	847, 1075, 1111
SseBI	AGGCCT	1 cut(s)	1083
SsiI	CCGC	1 cut(s)	819
SspMI	CTAG	3 cut(s)	497, 750, 965
StuI	AGGCCT	1 cut(s)	1083
StyD4I	CCNGG	1 cut(s)	943
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	5 cut(s)	27, 85, 429, 608, 656
TaiI	ACGT	1 cut(s)	874
TatI	WGTACW	1 cut(s)	1034
TfiI	GAWTC	5 cut(s)	179, 257, 463, 623, 957
Tru1I	TTAA	3 cut(s)	938, 1076, 1302
Tru9I	TTAA	3 cut(s)	938, 1076, 1302
TscAI	CASTG	2 cut(s)	403, 613
TseFI	GTSAC	1 cut(s)	1018
TseI	GCWGC	4 cut(s)	184, 235, 238, 995
Tsp45I	GTSAC	1 cut(s)	1018
TspDTI	ATGAA	5 cut(s)	79, 261, 402, 939, 1295
TspRI	CASTG	2 cut(s)	403, 613
Van91I	CCANNNNNTGG	1 cut(s)	545
Vha464I	CTTAAG	1 cut(s)	1075
VpaK11BI	GGWCC	1 cut(s)	580
XagI	CCTNNNNNAGG	1 cut(s)	408
XapI	RAATTY	2 cut(s)	349, 511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1162
XmnI	GAANNNNTTC	2 cut(s)	446, 1191
XspI	CTAG	3 cut(s)	497, 750, 965
Zsp2I	ATGCAT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.