Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G35560 AT5G35560 |
| fragaria_vesca | FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 |
| malus_domestica | MD00G1142500.v1.1 MD02G1088900.v1.1 MD02G1089000.v1.1 MD15G1216100.v1.1 |
| prunus_persica | Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 |
| pyrus_communis | pycom15g19170 |
| rosa_chinensis | RchiOBHm_Chr2g0094551 |
| rosa_laevigata | RLG00000016501 |
| rosa_multiflora | Rmu_sc0004359.1_g000040 |
| rosa_roxburghii | Rroxscaffold_2G00147070 |
| rosa_rugosa | Rorug02G0044800 Rorug02G0044900 Rorug02G0045000 Rorug02G0045100 Rorug02G0045100 Rorug02G0045100 |
| rosa_samantha | Rh2AG093000 Rh2BG093300 Rh2CG095700 Rh2DG092100 |
| rosa_wichuraiana | Rw7G039010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1596 |
| Acc36I | ACCTGC | 1 cut(s) | 1596 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1579 |
| AccII | CGCG | 2 cut(s) | 115, 2337 |
| AciI | CCGC | 4 cut(s) | 113, 115, 1028, 1136 |
| AclWI | GGATC | 5 cut(s) | 312, 549, 1002, 1015, 1513 |
| AcoI | YGGCCR | 2 cut(s) | 116, 1206 |
| AcsI | RAATTY | 3 cut(s) | 621, 1396, 1679 |
| AcuI | CTGAAG | 1 cut(s) | 1065 |
| AfaI | GTAC | 5 cut(s) | 1529, 1669, 1998, 2271, 2385 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 34, 35, 538, 1553, 1579, 1711, 1896 |
| AgsI | TTSAA | 8 cut(s) | 139, 167, 319, 485, 616, 696, 1295, 1481 |
| AjnI | CCWGG | 5 cut(s) | 28, 424, 562, 1704, 2043 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 229, 261 |
| AluBI | AGCT | 7 cut(s) | 95, 292, 523, 1085, 2008, 2122, 2356 |
| AluI | AGCT | 7 cut(s) | 95, 292, 523, 1085, 2008, 2122, 2356 |
| Alw21I | GWGCWC | 5 cut(s) | 445, 642, 1234, 1587, 2171 |
| Alw26I | GTCTC | 5 cut(s) | 11, 468, 795, 1418, 1427 |
| Alw44I | GTGCAC | 3 cut(s) | 441, 1230, 2167 |
| AlwI | GGATC | 5 cut(s) | 312, 549, 1002, 1015, 1513 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 86, 95, 98 |
| Ama87I | CYCGRG | 2 cut(s) | 465, 838 |
| AoxI | GGCC | 4 cut(s) | 116, 358, 568, 1206 |
| ApaLI | GTGCAC | 3 cut(s) | 441, 1230, 2167 |
| ApoI | RAATTY | 3 cut(s) | 621, 1396, 1679 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 598, 624, 1623, 2357 |
| AspLEI | GCGC | 2 cut(s) | 1700, 1804 |
| AspS9I | GGNCC | 2 cut(s) | 1190, 2392 |
| AsuHPI | GGTGA | 3 cut(s) | 356, 2046, 2059 |
| AvaI | CYCGRG | 2 cut(s) | 465, 838 |
| AvaII | GGWCC | 2 cut(s) | 1190, 2392 |
| AxyI | CCTNAGG | 1 cut(s) | 489 |
| BaeGI | GKGCMC | 3 cut(s) | 445, 1234, 2171 |
| BalI | TGGCCA | 1 cut(s) | 1208 |
| BamHI | GGATCC | 1 cut(s) | 1007 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2283, 2315 |
| BbsI | GAAGAC | 1 cut(s) | 1395 |
| Bbv12I | GWGCWC | 5 cut(s) | 445, 642, 1234, 1587, 2171 |
| BbvCI | CCTCAGC | 1 cut(s) | 1686 |
| BccI | CCATC | 5 cut(s) | 143, 959, 1198, 1581, 1930 |
| BceAI | ACGGC | 2 cut(s) | 103, 783 |
| BciT130I | CCWGG | 5 cut(s) | 30, 426, 564, 1706, 2045 |
| BciVI | GTATCC | 1 cut(s) | 2302 |
| BcoDI | GTCTC | 5 cut(s) | 11, 468, 795, 1418, 1427 |
| BfaI | CTAG | 8 cut(s) | 261, 572, 1115, 1383, 1676, 1772, 2145, 2331 |
| BfmI | CTRYAG | 4 cut(s) | 87, 105, 293, 955 |
| BfoI | RGCGCY | 1 cut(s) | 1805 |
| BfuAI | ACCTGC | 1 cut(s) | 1596 |
| BfuI | GTATCC | 1 cut(s) | 2302 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 331 |
| BglII | AGATCT | 1 cut(s) | 2216 |
| BmcAI | AGTACT | 1 cut(s) | 1529 |
| Bme1390I | CCNGG | 5 cut(s) | 30, 426, 564, 1706, 2045 |
| Bme18I | GGWCC | 2 cut(s) | 1190, 2392 |
| BmeT110I | CYCGRG | 2 cut(s) | 465, 838 |
| BmgT120I | GGNCC | 2 cut(s) | 1190, 2392 |
| BmiI | GGNNCC | 5 cut(s) | 324, 1009, 1191, 1558, 1762 |
| BmrFI | CCNGG | 5 cut(s) | 30, 426, 564, 1706, 2045 |
| BmsI | GCATC | 5 cut(s) | 698, 1123, 1600, 1939, 2020 |
| BpiI | GAAGAC | 1 cut(s) | 1395 |
| BpmI | CTGGAG | 2 cut(s) | 193, 1348 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1686 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1461 |
| BsaJI | CCNNGG | 5 cut(s) | 28, 113, 562, 759, 1596 |
| BsaWI | WCCGGW | 1 cut(s) | 1445 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 34, 35, 538, 1553, 1579, 1711, 1896 |
| Bse1I | ACTGG | 8 cut(s) | 210, 1184, 1209, 1365, 1534, 1894, 1916, 2156 |
| Bse21I | CCTNAGG | 1 cut(s) | 489 |
| Bse3DI | GCAATG | 3 cut(s) | 1508, 1540, 1794 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1461 |
| BseBI | CCWGG | 5 cut(s) | 30, 426, 564, 1706, 2045 |
| BseDI | CCNNGG | 5 cut(s) | 28, 113, 562, 759, 1596 |
| BseGI | GGATG | 5 cut(s) | 713, 775, 1573, 1591, 1954 |
| BseJI | GATNNNNATC | 1 cut(s) | 1461 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 34, 35, 538, 1553, 1579, 1711, 1896 |
| BseMI | GCAATG | 3 cut(s) | 1508, 1540, 1794 |
| BseMII | CTCAG | 3 cut(s) | 503, 785, 1677 |
| BseNI | ACTGG | 8 cut(s) | 210, 1184, 1209, 1365, 1534, 1894, 1916, 2156 |
| BseRI | GAGGAG | 1 cut(s) | 1727 |
| BseSI | GKGCMC | 3 cut(s) | 445, 1234, 2171 |
| BseX3I | CGGCCG | 1 cut(s) | 116 |
| BseYI | CCCAGC | 1 cut(s) | 1546 |
| BsgI | GTGCAG | 1 cut(s) | 755 |
| Bsh1236I | CGCG | 2 cut(s) | 115, 2337 |
| Bsh1285I | CGRYCG | 2 cut(s) | 119, 2341 |
| BshFI | GGCC | 4 cut(s) | 118, 360, 570, 1208 |
| BsiEI | CGRYCG | 2 cut(s) | 119, 2341 |
| BsiHKAI | GWGCWC | 5 cut(s) | 445, 642, 1234, 1587, 2171 |
| BsiHKCI | CYCGRG | 2 cut(s) | 465, 838 |
| BsiSI | CCGG | 1 cut(s) | 1446 |
| BslFI | GGGAC | 1 cut(s) | 1872 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 34, 35, 538, 1553, 1579, 1711, 1896 |
| BsmAI | GTCTC | 5 cut(s) | 11, 468, 795, 1418, 1427 |
| BsmBI | CGTCTC | 2 cut(s) | 11, 795 |
| BsmFI | GGGAC | 1 cut(s) | 1872 |
| BsmI | GAATGC | 1 cut(s) | 831 |
| BsnI | GGCC | 4 cut(s) | 118, 360, 570, 1208 |
| BsoBI | CYCGRG | 2 cut(s) | 465, 838 |
| Bsp1286I | GDGCHC | 5 cut(s) | 445, 642, 1234, 1587, 2171 |
| Bsp1407I | TGTACA | 2 cut(s) | 2269, 2383 |
| Bsp143I | GATC | 9 cut(s) | 304, 541, 655, 1007, 1462, 1498, 1505, 2216, 2338 |
| Bsp19I | CCATGG | 1 cut(s) | 759 |
| Bsp68I | TCGCGA | 1 cut(s) | 2337 |
| BspACI | CCGC | 4 cut(s) | 113, 115, 1028, 1136 |
| BspANI | GGCC | 4 cut(s) | 118, 360, 570, 1208 |
| BspCNI | CTCAG | 3 cut(s) | 502, 786, 1678 |
| BspFNI | CGCG | 2 cut(s) | 115, 2337 |
| BspLI | GGNNCC | 5 cut(s) | 324, 1009, 1191, 1558, 1762 |
| BspMAI | CTGCAG | 2 cut(s) | 91, 297 |
| BspMI | ACCTGC | 1 cut(s) | 1596 |
| BspPI | GGATC | 5 cut(s) | 312, 549, 1002, 1015, 1513 |
| BspQI | GCTCTTC | 1 cut(s) | 1148 |
| BsrDI | GCAATG | 3 cut(s) | 1508, 1540, 1794 |
| BsrGI | TGTACA | 2 cut(s) | 2269, 2383 |
| BsrI | ACTGG | 8 cut(s) | 210, 1184, 1209, 1365, 1534, 1894, 1916, 2156 |
| BssECI | CCNNGG | 5 cut(s) | 28, 113, 562, 759, 1596 |
| BssMI | GATC | 9 cut(s) | 304, 541, 655, 1007, 1462, 1498, 1505, 2216, 2338 |
| BssT1I | CCWWGG | 2 cut(s) | 759, 1596 |
| Bst2UI | CCWGG | 5 cut(s) | 30, 426, 564, 1706, 2045 |
| Bst4CI | ACNGT | 3 cut(s) | 374, 1004, 1624 |
| Bst6I | CTCTTC | 3 cut(s) | 9, 1148, 1425 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 86, 95, 98, 1238, 1793 |
| BstAUI | TGTACA | 2 cut(s) | 2269, 2383 |
| BstC8I | GCNNGC | 2 cut(s) | 1287, 1750 |
| BstDEI | CTNAG | 4 cut(s) | 489, 794, 1686, 2204 |
| BstDSI | CCRYGG | 2 cut(s) | 113, 759 |
| BstEII | GGTNACC | 1 cut(s) | 449 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1709 |
| BstF5I | GGATG | 5 cut(s) | 713, 775, 1573, 1591, 1954 |
| BstFNI | CGCG | 2 cut(s) | 115, 2337 |
| BstH2I | RGCGCY | 1 cut(s) | 1805 |
| BstHHI | GCGC | 2 cut(s) | 1700, 1804 |
| BstKTI | GATC | 9 cut(s) | 307, 544, 658, 1010, 1465, 1501, 1508, 2219, 2341 |
| BstMAI | GTCTC | 5 cut(s) | 11, 468, 795, 1418, 1427 |
| BstMBI | GATC | 9 cut(s) | 304, 541, 655, 1007, 1462, 1498, 1505, 2216, 2338 |
| BstMCI | CGRYCG | 2 cut(s) | 119, 2341 |
| BstNI | CCWGG | 5 cut(s) | 30, 426, 564, 1706, 2045 |
| BstNSI | RCATGY | 1 cut(s) | 1752 |
| BstPI | GGTNACC | 1 cut(s) | 449 |
| BstSCI | CCNGG | 5 cut(s) | 28, 424, 562, 1704, 2043 |
| BstSFI | CTRYAG | 4 cut(s) | 87, 105, 293, 955 |
| BstSLI | GKGCMC | 3 cut(s) | 445, 1234, 2171 |
| BstUI | CGCG | 2 cut(s) | 115, 2337 |
| BstV2I | GAAGAC | 1 cut(s) | 1395 |
| BstX2I | RGATCY | 3 cut(s) | 541, 1007, 2216 |
| BstYI | RGATCY | 3 cut(s) | 541, 1007, 2216 |
| BstZI | CGGCCG | 1 cut(s) | 116 |
| Bsu36I | CCTNAGG | 1 cut(s) | 489 |
| BsuI | GTATCC | 1 cut(s) | 2302 |
| BsuRI | GGCC | 4 cut(s) | 118, 360, 570, 1208 |
| BtgI | CCRYGG | 2 cut(s) | 113, 759 |
| BtgZI | GCGATG | 1 cut(s) | 161 |
| BtsCI | GGATG | 5 cut(s) | 713, 775, 1573, 1591, 1954 |
| BtsI | GCAGTG | 1 cut(s) | 1165 |
| BtsIMutI | CAGTG | 4 cut(s) | 1009, 1165, 1191, 1901 |
| BtuMI | TCGCGA | 1 cut(s) | 2337 |
| BveI | ACCTGC | 1 cut(s) | 1596 |
| Cac8I | GCNNGC | 2 cut(s) | 1287, 1750 |
| CaiI | CAGNNNCTG | 3 cut(s) | 86, 95, 98 |
| CfoI | GCGC | 2 cut(s) | 1700, 1804 |
| Cfr13I | GGNCC | 2 cut(s) | 1190, 2392 |
| Cfr42I | CCGCGG | 1 cut(s) | 116 |
| CseI | GACGC | 2 cut(s) | 260, 2195 |
| CsiI | ACCWGGT | 1 cut(s) | 2043 |
| Csp6I | GTAC | 5 cut(s) | 1528, 1668, 1997, 2270, 2384 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2106, 2141 |
| CviQI | GTAC | 5 cut(s) | 1528, 1668, 1997, 2270, 2384 |
| DdeI | CTNAG | 4 cut(s) | 489, 794, 1686, 2204 |
| DpnI | GATC | 9 cut(s) | 306, 543, 657, 1009, 1464, 1500, 1507, 2218, 2340 |
| DpnII | GATC | 9 cut(s) | 304, 541, 655, 1007, 1462, 1498, 1505, 2216, 2338 |
| DraI | TTTAAA | 1 cut(s) | 646 |
| EaeI | YGGCCR | 2 cut(s) | 116, 1206 |
| EagI | CGGCCG | 1 cut(s) | 116 |
| Eam1104I | CTCTTC | 3 cut(s) | 9, 1148, 1425 |
| EarI | CTCTTC | 3 cut(s) | 9, 1148, 1425 |
| EclXI | CGGCCG | 1 cut(s) | 116 |
| Eco130I | CCWWGG | 2 cut(s) | 759, 1596 |
| Eco147I | AGGCCT | 2 cut(s) | 360, 570 |
| Eco32I | GATATC | 1 cut(s) | 379 |
| Eco47I | GGWCC | 2 cut(s) | 1190, 2392 |
| Eco52I | CGGCCG | 1 cut(s) | 116 |
| Eco57I | CTGAAG | 1 cut(s) | 1065 |
| Eco81I | CCTNAGG | 1 cut(s) | 489 |
| Eco88I | CYCGRG | 2 cut(s) | 465, 838 |
| Eco91I | GGTNACC | 1 cut(s) | 449 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1709 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1190 |
| EcoO65I | GGTNACC | 1 cut(s) | 449 |
| EcoRII | CCWGG | 5 cut(s) | 28, 424, 562, 1704, 2043 |
| EcoRV | GATATC | 1 cut(s) | 379 |
| EcoT14I | CCWWGG | 2 cut(s) | 759, 1596 |
| EcoT22I | ATGCAT | 1 cut(s) | 1754 |
| ErhI | CCWWGG | 2 cut(s) | 759, 1596 |
| Esp3I | CGTCTC | 2 cut(s) | 11, 795 |
| FaqI | GGGAC | 1 cut(s) | 1872 |
| FauI | CCCGC | 1 cut(s) | 120 |
| FauNDI | CATATG | 1 cut(s) | 1754 |
| FokI | GGATG | 5 cut(s) | 720, 762, 1560, 1578, 1961 |
| FspBI | CTAG | 8 cut(s) | 261, 572, 1115, 1383, 1676, 1772, 2145, 2331 |
| GlaI | GCGC | 2 cut(s) | 1699, 1803 |
| GsaI | CCCAGC | 1 cut(s) | 1550 |
| GsuI | CTGGAG | 2 cut(s) | 193, 1348 |
| HaeII | RGCGCY | 1 cut(s) | 1805 |
| HaeIII | GGCC | 4 cut(s) | 118, 360, 570, 1208 |
| HapII | CCGG | 1 cut(s) | 1446 |
| HgaI | GACGC | 2 cut(s) | 260, 2195 |
| HhaI | GCGC | 2 cut(s) | 1700, 1804 |
| Hin6I | GCGC | 2 cut(s) | 1698, 1802 |
| HinP1I | GCGC | 2 cut(s) | 1698, 1802 |
| HincII | GTYRAC | 1 cut(s) | 2185 |
| HindII | GTYRAC | 1 cut(s) | 2185 |
| HindIII | AAGCTT | 2 cut(s) | 2120, 2354 |
| HpaII | CCGG | 1 cut(s) | 1446 |
| HphI | GGTGA | 3 cut(s) | 356, 2046, 2059 |
| Hpy166II | GTNNAC | 9 cut(s) | 161, 443, 505, 1145, 1232, 2169, 2185, 2252, 2365 |
| Hpy8I | GTNNAC | 9 cut(s) | 161, 443, 505, 1145, 1232, 2169, 2185, 2252, 2365 |
| Hpy99I | CGWCG | 2 cut(s) | 64, 124 |
| HpyAV | CCTTC | 6 cut(s) | 313, 371, 609, 789, 1775, 2410 |
| HpyCH4III | ACNGT | 3 cut(s) | 374, 1004, 1624 |
| HpyF3I | CTNAG | 4 cut(s) | 489, 794, 1686, 2204 |
| HspAI | GCGC | 2 cut(s) | 1698, 1802 |
| KspI | CCGCGG | 1 cut(s) | 116 |
| Kzo9I | GATC | 9 cut(s) | 304, 541, 655, 1007, 1462, 1498, 1505, 2216, 2338 |
| LguI | GCTCTTC | 1 cut(s) | 1148 |
| LmnI | GCTCC | 4 cut(s) | 322, 637, 1582, 1766 |
| LweI | GCATC | 5 cut(s) | 698, 1123, 1600, 1939, 2020 |
| MabI | ACCWGGT | 1 cut(s) | 2043 |
| MaeI | CTAG | 8 cut(s) | 261, 572, 1115, 1383, 1676, 1772, 2145, 2331 |
| MaeIII | GTNAC | 6 cut(s) | 449, 858, 1331, 1536, 1928, 2052 |
| MalI | GATC | 9 cut(s) | 306, 543, 657, 1009, 1464, 1500, 1507, 2218, 2340 |
| MboI | GATC | 9 cut(s) | 304, 541, 655, 1007, 1462, 1498, 1505, 2216, 2338 |
| MfeI | CAATTG | 1 cut(s) | 1743 |
| MflI | RGATCY | 3 cut(s) | 541, 1007, 2216 |
| MhlI | GDGCHC | 5 cut(s) | 445, 642, 1234, 1587, 2171 |
| MlsI | TGGCCA | 1 cut(s) | 1208 |
| MluNI | TGGCCA | 1 cut(s) | 1208 |
| MlyI | GAGTC | 1 cut(s) | 2315 |
| MmeI | TCCRAC | 2 cut(s) | 1075, 1788 |
| Mox20I | TGGCCA | 1 cut(s) | 1208 |
| Mph1103I | ATGCAT | 1 cut(s) | 1754 |
| MroXI | GAANNNNTTC | 4 cut(s) | 598, 624, 1623, 2357 |
| MscI | TGGCCA | 1 cut(s) | 1208 |
| MseI | TTAA | 7 cut(s) | 186, 645, 809, 875, 911, 2102, 2213 |
| MslI | CAYNNNNRTG | 3 cut(s) | 867, 1635, 1753 |
| Msp20I | TGGCCA | 1 cut(s) | 1208 |
| MspA1I | CMGCKG | 6 cut(s) | 95, 115, 292, 523, 1028, 1085 |
| MspI | CCGG | 1 cut(s) | 1446 |
| MspR9I | CCNGG | 5 cut(s) | 30, 426, 564, 1706, 2045 |
| MunI | CAATTG | 1 cut(s) | 1743 |
| Mva1269I | GAATGC | 1 cut(s) | 831 |
| MvaI | CCWGG | 5 cut(s) | 30, 426, 564, 1706, 2045 |
| MvnI | CGCG | 2 cut(s) | 115, 2337 |
| NcoI | CCATGG | 1 cut(s) | 759 |
| NdeI | CATATG | 1 cut(s) | 1754 |
| NdeII | GATC | 9 cut(s) | 304, 541, 655, 1007, 1462, 1498, 1505, 2216, 2338 |
| NlaIV | GGNNCC | 5 cut(s) | 324, 1009, 1191, 1558, 1762 |
| NmuCI | GTSAC | 2 cut(s) | 1928, 2052 |
| NruI | TCGCGA | 1 cut(s) | 2337 |
| NsiI | ATGCAT | 1 cut(s) | 1754 |
| NspI | RCATGY | 1 cut(s) | 1752 |
| PaeI | GCATGC | 1 cut(s) | 1752 |
| PaeR7I | CTCGAG | 1 cut(s) | 838 |
| PaqCI | CACCTGC | 1 cut(s) | 1596 |
| PceI | AGGCCT | 2 cut(s) | 360, 570 |
| PciSI | GCTCTTC | 1 cut(s) | 1148 |
| PctI | GAATGC | 1 cut(s) | 831 |
| PdmI | GAANNNNTTC | 4 cut(s) | 598, 624, 1623, 2357 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1579 |
| PfoI | TCCNGGA | 1 cut(s) | 424 |
| Ple19I | CGATCG | 1 cut(s) | 2341 |
| PleI | GAGTC | 1 cut(s) | 2315 |
| PpsI | GAGTC | 1 cut(s) | 2315 |
| PpuMI | RGGWCCY | 1 cut(s) | 1190 |
| Psp5II | RGGWCCY | 1 cut(s) | 1190 |
| Psp6I | CCWGG | 5 cut(s) | 28, 424, 562, 1704, 2043 |
| PspEI | GGTNACC | 1 cut(s) | 449 |
| PspFI | CCCAGC | 1 cut(s) | 1546 |
| PspGI | CCWGG | 5 cut(s) | 28, 424, 562, 1704, 2043 |
| PspN4I | GGNNCC | 5 cut(s) | 324, 1009, 1191, 1558, 1762 |
| PspPI | GGNCC | 2 cut(s) | 1190, 2392 |
| PspPPI | RGGWCCY | 1 cut(s) | 1190 |
| PstI | CTGCAG | 2 cut(s) | 91, 297 |
| PstNI | CAGNNNCTG | 3 cut(s) | 86, 95, 98 |
| PsuI | RGATCY | 3 cut(s) | 541, 1007, 2216 |
| PvuI | CGATCG | 1 cut(s) | 2341 |
| PvuII | CAGCTG | 4 cut(s) | 95, 292, 523, 1085 |
| RruI | TCGCGA | 1 cut(s) | 2337 |
| RsaI | GTAC | 5 cut(s) | 1529, 1669, 1998, 2271, 2385 |
| RsaNI | GTAC | 5 cut(s) | 1528, 1668, 1997, 2270, 2384 |
| RseI | CAYNNNNRTG | 3 cut(s) | 867, 1635, 1753 |
| SacII | CCGCGG | 1 cut(s) | 116 |
| SapI | GCTCTTC | 1 cut(s) | 1148 |
| SaqAI | TTAA | 7 cut(s) | 186, 645, 809, 875, 911, 2102, 2213 |
| Sau3AI | GATC | 9 cut(s) | 304, 541, 655, 1007, 1462, 1498, 1505, 2216, 2338 |
| Sau96I | GGNCC | 2 cut(s) | 1190, 2392 |
| ScaI | AGTACT | 1 cut(s) | 1529 |
| SchI | GAGTC | 1 cut(s) | 2315 |
| ScrFI | CCNGG | 5 cut(s) | 30, 426, 564, 1706, 2045 |
| SduI | GDGCHC | 5 cut(s) | 445, 642, 1234, 1587, 2171 |
| SexAI | ACCWGGT | 1 cut(s) | 2043 |
| SfaNI | GCATC | 5 cut(s) | 698, 1123, 1600, 1939, 2020 |
| SfcI | CTRYAG | 4 cut(s) | 87, 105, 293, 955 |
| Sfr274I | CTCGAG | 1 cut(s) | 838 |
| Sfr303I | CCGCGG | 1 cut(s) | 116 |
| SgrBI | CCGCGG | 1 cut(s) | 116 |
| SinI | GGWCC | 2 cut(s) | 1190, 2392 |
| SlaI | CTCGAG | 1 cut(s) | 838 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 867, 1635, 1753 |
| SmlI | CTYRAG | 1 cut(s) | 838 |
| SmoI | CTYRAG | 1 cut(s) | 838 |
| SphI | GCATGC | 1 cut(s) | 1752 |
| SseBI | AGGCCT | 2 cut(s) | 360, 570 |
| SsiI | CCGC | 4 cut(s) | 113, 115, 1028, 1136 |
| SspI | AATATT | 3 cut(s) | 401, 481, 1604 |
| SspMI | CTAG | 8 cut(s) | 261, 572, 1115, 1383, 1676, 1772, 2145, 2331 |
| StuI | AGGCCT | 2 cut(s) | 360, 570 |
| StyD4I | CCNGG | 5 cut(s) | 28, 424, 562, 1704, 2043 |
| StyI | CCWWGG | 2 cut(s) | 759, 1596 |
| TaaI | ACNGT | 3 cut(s) | 374, 1004, 1624 |
| TaqI | TCGA | 5 cut(s) | 839, 1413, 2077, 2319, 2341 |
| TatI | WGTACW | 5 cut(s) | 1527, 1667, 1996, 2269, 2383 |
| TauI | GCSGC | 1 cut(s) | 118 |
| Tru1I | TTAA | 7 cut(s) | 186, 645, 809, 875, 911, 2102, 2213 |
| Tru9I | TTAA | 7 cut(s) | 186, 645, 809, 875, 911, 2102, 2213 |
| TscAI | CASTG | 4 cut(s) | 1009, 1165, 1191, 1901 |
| TseFI | GTSAC | 2 cut(s) | 1928, 2052 |
| Tsp45I | GTSAC | 2 cut(s) | 1928, 2052 |
| TspGWI | ACGGA | 3 cut(s) | 77, 2237, 2405 |
| TspRI | CASTG | 4 cut(s) | 1009, 1165, 1191, 1901 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1579 |
| VneI | GTGCAC | 3 cut(s) | 441, 1230, 2167 |
| VpaK11BI | GGWCC | 2 cut(s) | 1190, 2392 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1709 |
| XapI | RAATTY | 3 cut(s) | 621, 1396, 1679 |
| XbaI | TCTAGA | 2 cut(s) | 1675, 1771 |
| XceI | RCATGY | 1 cut(s) | 1752 |
| XhoI | CTCGAG | 1 cut(s) | 838 |
| XmnI | GAANNNNTTC | 4 cut(s) | 598, 624, 1623, 2357 |
| XspI | CTAG | 8 cut(s) | 261, 572, 1115, 1383, 1676, 1772, 2145, 2331 |
| ZrmI | AGTACT | 1 cut(s) | 1529 |
| Zsp2I | ATGCAT | 1 cut(s) | 1754 |