Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003032

Physical Location & Seq

Genomic Coordinates Reverse (-)

7797282 .. 7804864

Gene Structure 7583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG093000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGAAAAATGGAGGGAAGCTTTTTAGTATGGATAAAAGTGAAGGGTCGGGTGGCCCTGGTTGGGGCACTTCGCTTTTCATGCAAACAACGGAAGATGTTGCAAGAGCAGTTGCTGCTGCCGCAGCTGCTGCTACTGCCACACGGCCGTCAGTTGTATATTCCTCAAAAGAAGAAGATGGTGGTAGTCCACTTCAAAGACTACAACGCCAATTTAATAAAGTGCTAAAAGGTTTCTCAAGTCCTCCTGAAGTGAAAACAGGAAGAACTTACAATCCAGAAGTTTTGACTAGCCAGAAGCGTCAATGGGTAAACTTTCAGTTGCAGCACTTGGATCATAGGTCTTTAAAGGAGCCAACAAGGTTTTTCGAGAGCATGGTAGTTGTGGGGCTTCACCCTAACTGTGATATCCAGGCACTCCAAAGGCAATATTTTGCAAGAAAGTCTGAAGGTGCAGGAAAATTGCGAAGTGCACTTGGTAACCAGAATCAATCTCGAGTAGAACCCAATATTGAACCTCAGGTGTTATTGGTTTACCCTCCGGAAAAACAGCTGCCTCTTCAATACAAGGATCTCATTTCATTTTGCTTCCCAGGAGGCCTAGAGGTTCATGCTGTTGAGAGAACTCCTTCCATGAGTGAGTTGAATGAACTTCTACTGGGGCAGGAGCATTTTAAACAAAGCGATCTGTCCTTTGTATTCCGGTTACAGGTTGCTGATGACTCAACTCTGTATGGATGCTGCGTGTTAGTGGAAGAATTGGTGCAAAAACCCTCTGGATTGCTTTCCATGATTTCTGAAAAACATCCTACTCGCCCGTCTCTGAGTCGTCATATATTAACCACTCGGAGATGTTATTGCATTCTTTCGAGGATTCCTGCCTTTGAGTTACATTTTGGTGTATTGAATAGCATCTTCACAGAAGAAAGGTTGGAACGATTAACAAAAGGTATTGGTCTTTTGGATTTAGAATCCCCAAAGGATAATAGAAATGATGAAAATTTAGAGGAAAATACAGAAGAAATTCCAGACAATGGATCACTAAATAGTAGAACAGGGGACATGGTAAATGGCACAGCAGAATTTTGTCAGACAAGCCTAAAAGATGATTCACCTGAGAGAGTTGTCGTTGTTCCAATTCATCCTGAAACCGAGATGGTCAGTTCCAAGATAAAATCTTGTGTGGCAAATACAGAAGTTTGTGAGGTCTATGCTGATGATTTCTCTACAAACAAGCCTGCTTTTGAAAGGCGATTACCAAATGCTGTTCTACCTCTTTTGCGTTACTATCAGTATGAAAGTTCTGATTCTTCCTCCAGTCTTCAGGGTTCTCCTAGTGAAGACAGGAATTTTAGGAGTGATGTCGATGATATAGAGACAGAAGAGGCATCTTTCTCCGGCCAAGACGATTCTGATCTCATTGATATTCTTGAATGGGCAAAGGCAAACGATCATGGATCACTGCAGATAATAAGTGAGTACTACCAGTTACATTGTCCTGCCAGAGGCTCCACAATTAGATTCCATCCTTTGGAGCACCTGCATCCCTTGGAATATTATAGACCAGATGAAACAGTTTTACATATTGGTGGCTCAACCATTGATTTGAGGTCCTGTAGTACAAGTCTGGAATTTGCTGAGGCGCACAGCGCACTCCTGGCAGAGGAGGAAGCAACTGCATTATCAGTATGGGCTATTGCATGCATATGTGGCTCCTTACGTCTTGAAAATGTATTAGCAATGTTTGCAGGAGCGCTGTTGGAGAAGCAAATTGTAATTATTTGTTCCAATTTGGGTATCTTATCTGCTTCAGTGTTGTCCATTATCCCTCTAATTCGTCCCTACCAGTGGCAAAGCCTACTAATGCCAGTTTTACCAAGTGACATGATGGACTTTTTGGATGCACCTGTTCCGTACATAGTTGGGGTGAAGAACAAAACACATGAAGTACAGTCCAAACTATCTAATGTAATTCTGGTTGATGCCAACAAGAACCAGGTGAAGTCACCAACAATACCTCATTTGCCACAACATCGGGAATTATTTTCAGCATTAAGTCCTTATCATGCAAAGCTTGTGGGAGAGAGTTTTTTGGCTAGGAAAAGGCCAGTGTATGAGTGCACAGATGAACAGGTTGAAGCTGCCAAATGTTTTCTAGGAGTCTTAAGAACTTACTTGGATTCTCTTTGCTCTAATCTCCGTTCACACACAATTACAAATGTACAATCGAATGACGATAAGGTGTCGCTACTTCTGAAAGAGAGTTTCATCGACTCATTTCCTAGTCGCGATCGGCCATTTATGAAGGTGTGTTCCTTGACATTTTCTCTTGTTTTTTGTGATCAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN uDENN

Protein Analysis

782

Amino Acids

87.39

Weight (kDa)

5.38

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
uDENN	PF03456	172 - 249	3.8e-07	uDENN domain
DENN	PF02141	561 - 663	1.9e-23	DENN (AEX-3) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35560 AT5G35560
fragaria_vesca	FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450
malus_domestica	MD00G1142500.v1.1 MD02G1088900.v1.1 MD02G1089000.v1.1 MD15G1216100.v1.1
prunus_persica	Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1
pyrus_communis	pycom15g19170
rosa_chinensis	RchiOBHm_Chr2g0094551
rosa_laevigata	RLG00000016501
rosa_multiflora	Rmu_sc0004359.1_g000040
rosa_roxburghii	Rroxscaffold_2G00147070
rosa_rugosa	Rorug02G0044800 Rorug02G0044900 Rorug02G0045000 Rorug02G0045100 Rorug02G0045100 Rorug02G0045100
rosa_samantha	Rh2AG093000 Rh2BG093300 Rh2CG095700 Rh2DG092100
rosa_wichuraiana	Rw7G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1545
Acc36I	ACCTGC	1 cut(s)	1545
AccB7I	CCANNNNNTGG	2 cut(s)	1031, 1528
AccII	CGCG	1 cut(s)	2286
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	4 cut(s)	339, 576, 1042, 1462
AcoI	YGGCCR	3 cut(s)	143, 1396, 2291
AcsI	RAATTY	5 cut(s)	997, 1020, 1079, 1345, 1628
AcuI	CTGAAG	4 cut(s)	267, 465, 1304, 1791
AfaI	GTAC	5 cut(s)	1478, 1618, 1913, 1947, 2220
AfeI	AGCGCT	1 cut(s)	1752
AfiI	CCNNNNNNNGG	8 cut(s)	61, 62, 706, 1031, 1502, 1528, 1660, 1845
AflII	CTTAAG	1 cut(s)	2161
AgsI	TTSAA	9 cut(s)	194, 512, 560, 643, 904, 1244, 1430, 1724, 2135
AjnI	CCWGG	5 cut(s)	55, 408, 589, 1653, 1992
AloI	GAACNNNNNNTCC	2 cut(s)	256, 288
AluBI	AGCT	5 cut(s)	19, 125, 550, 2071, 2138
AluI	AGCT	5 cut(s)	19, 125, 550, 2071, 2138
Alw21I	GWGCWC	3 cut(s)	472, 1536, 2120
Alw26I	GTCTC	2 cut(s)	822, 1367
Alw44I	GTGCAC	2 cut(s)	468, 2116
AlwI	GGATC	4 cut(s)	339, 576, 1042, 1462
AlwNI	CAGNNNCTG	2 cut(s)	113, 128
Ama87I	CYCGRG	1 cut(s)	492
Aor13HI	TCCGGA	1 cut(s)	538
Aor51HI	AGCGCT	1 cut(s)	1752
AoxI	GGCC	6 cut(s)	52, 143, 595, 1396, 2102, 2291
ApaLI	GTGCAC	2 cut(s)	468, 2116
ApeKI	GCWGC	9 cut(s)	113, 116, 122, 125, 128, 322, 550, 738, 2138
ApoI	RAATTY	5 cut(s)	997, 1020, 1079, 1345, 1628
Asp700I	GAANNNNTTC	2 cut(s)	625, 1020
AspLEI	GCGC	3 cut(s)	1642, 1649, 1753
AspS9I	GGNCC	2 cut(s)	53, 1608
AsuHPI	GGTGA	5 cut(s)	383, 1101, 1936, 1995, 2008
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	1 cut(s)	1608
AxyI	CCTNAGG	1 cut(s)	516
BaeGI	GKGCMC	3 cut(s)	68, 472, 2120
BbsI	GAAGAC	2 cut(s)	1310, 1344
Bbv12I	GWGCWC	3 cut(s)	472, 1536, 2120
BbvCI	CCTCAGC	1 cut(s)	1635
BbvI	GCAGC	9 cut(s)	100, 103, 112, 115, 134, 334, 537, 725, 2125
BccI	CCATC	4 cut(s)	170, 1147, 1530, 1879
BceAI	ACGGC	2 cut(s)	130, 158
BciT130I	CCWGG	5 cut(s)	57, 410, 591, 1655, 1994
BclI	TGATCA	1 cut(s)	2338
BcoDI	GTCTC	2 cut(s)	822, 1367
BfaI	CTAG	6 cut(s)	288, 599, 1332, 2094, 2153, 2280
BfmI	CTRYAG	2 cut(s)	1460, 1612
BfoI	RGCGCY	1 cut(s)	1754
BfrI	CTTAAG	1 cut(s)	2161
BfuAI	ACCTGC	1 cut(s)	1545
BmcAI	AGTACT	1 cut(s)	1478
Bme1390I	CCNGG	5 cut(s)	57, 410, 591, 1655, 1994
Bme18I	GGWCC	1 cut(s)	1608
BmeT110I	CYCGRG	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	53, 1608
BmiI	GGNNCC	3 cut(s)	351, 1507, 1711
BmrFI	CCNGG	5 cut(s)	57, 410, 591, 1655, 1994
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	6 cut(s)	725, 918, 1394, 1549, 1888, 1969
BmuI	ACTGGG	1 cut(s)	665
BpiI	GAAGAC	2 cut(s)	1310, 1344
BpmI	CTGGAG	1 cut(s)	1297
Bpu10I	CCTNAGC	1 cut(s)	1635
BpuEI	CTTGAG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	1410
BsaJI	CCNNGG	3 cut(s)	55, 589, 1545
BsaWI	WCCGGW	2 cut(s)	538, 699
Bsc4I	CCNNNNNNNGG	8 cut(s)	61, 62, 706, 1031, 1502, 1528, 1660, 1845
Bse1I	ACTGG	6 cut(s)	660, 1314, 1483, 1843, 1865, 2105
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	1743
Bse8I	GATNNNNATC	1 cut(s)	1410
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	5 cut(s)	57, 410, 591, 1655, 1994
BseDI	CCNNGG	3 cut(s)	55, 589, 1545
BseGI	GGATG	6 cut(s)	740, 802, 1138, 1522, 1540, 1903
BseJI	GATNNNNATC	1 cut(s)	1410
BseLI	CCNNNNNNNGG	8 cut(s)	61, 62, 706, 1031, 1502, 1528, 1660, 1845
BseMI	GCAATG	1 cut(s)	1743
BseMII	CTCAG	4 cut(s)	530, 812, 1104, 1626
BseNI	ACTGG	6 cut(s)	660, 1314, 1483, 1843, 1865, 2105
BseRI	GAGGAG	1 cut(s)	1676
BseSI	GKGCMC	3 cut(s)	68, 472, 2120
BseX3I	CGGCCG	1 cut(s)	143
BseXI	GCAGC	9 cut(s)	100, 103, 112, 115, 134, 334, 537, 725, 2125
BsgI	GTGCAG	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	2286
Bsh1285I	CGRYCG	2 cut(s)	146, 2290
BshFI	GGCC	6 cut(s)	54, 145, 597, 1398, 2104, 2293
BsiEI	CGRYCG	2 cut(s)	146, 2290
BsiHKAI	GWGCWC	3 cut(s)	472, 1536, 2120
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	3 cut(s)	539, 700, 1395
BslFI	GGGAC	2 cut(s)	1070, 1821
BslI	CCNNNNNNNGG	8 cut(s)	61, 62, 706, 1031, 1502, 1528, 1660, 1845
BsmAI	GTCTC	2 cut(s)	822, 1367
BsmBI	CGTCTC	1 cut(s)	822
BsmFI	GGGAC	2 cut(s)	1070, 1821
BsmI	GAATGC	1 cut(s)	858
BsnI	GGCC	6 cut(s)	54, 145, 597, 1398, 2104, 2293
BsoBI	CYCGRG	1 cut(s)	492
Bsp1286I	GDGCHC	4 cut(s)	68, 472, 1536, 2120
Bsp13I	TCCGGA	1 cut(s)	538
Bsp1407I	TGTACA	1 cut(s)	2218
Bsp143I	GATC	9 cut(s)	331, 568, 682, 1034, 1411, 1447, 1454, 2287, 2338
Bsp68I	TCGCGA	1 cut(s)	2286
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	6 cut(s)	54, 145, 597, 1398, 2104, 2293
BspCNI	CTCAG	4 cut(s)	529, 813, 1105, 1627
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	2286
BspLI	GGNNCC	3 cut(s)	351, 1507, 1711
BspMAI	CTGCAG	1 cut(s)	1464
BspMI	ACCTGC	1 cut(s)	1545
BspPI	GGATC	4 cut(s)	339, 576, 1042, 1462
BspTI	CTTAAG	1 cut(s)	2161
BsrDI	GCAATG	1 cut(s)	1743
BsrGI	TGTACA	1 cut(s)	2218
BsrI	ACTGG	6 cut(s)	660, 1314, 1483, 1843, 1865, 2105
BssECI	CCNNGG	3 cut(s)	55, 589, 1545
BssMI	GATC	9 cut(s)	331, 568, 682, 1034, 1411, 1447, 1454, 2287, 2338
BssT1I	CCWWGG	1 cut(s)	1545
Bst2UI	CCWGG	5 cut(s)	57, 410, 591, 1655, 1994
Bst4CI	ACNGT	3 cut(s)	401, 1573, 1950
Bst6I	CTCTTC	2 cut(s)	561, 1374
BstAFI	CTTAAG	1 cut(s)	2161
BstAPI	GCANNNNNTGC	3 cut(s)	113, 128, 1742
BstAUI	TGTACA	1 cut(s)	2218
BstC8I	GCNNGC	2 cut(s)	1236, 1699
BstDEI	CTNAG	4 cut(s)	516, 821, 1113, 1635
BstEII	GGTNACC	1 cut(s)	476
BstENI	CCTNNNNNAGG	2 cut(s)	1500, 1658
BstF5I	GGATG	6 cut(s)	740, 802, 1138, 1522, 1540, 1903
BstFNI	CGCG	1 cut(s)	2286
BstH2I	RGCGCY	1 cut(s)	1754
BstHHI	GCGC	3 cut(s)	1642, 1649, 1753
BstKTI	GATC	9 cut(s)	334, 571, 685, 1037, 1414, 1450, 1457, 2290, 2341
BstMAI	GTCTC	2 cut(s)	822, 1367
BstMBI	GATC	9 cut(s)	331, 568, 682, 1034, 1411, 1447, 1454, 2287, 2338
BstMCI	CGRYCG	2 cut(s)	146, 2290
BstNI	CCWGG	5 cut(s)	57, 410, 591, 1655, 1994
BstNSI	RCATGY	1 cut(s)	1701
BstPI	GGTNACC	1 cut(s)	476
BstSCI	CCNGG	5 cut(s)	55, 408, 589, 1653, 1992
BstSFI	CTRYAG	2 cut(s)	1460, 1612
BstSLI	GKGCMC	3 cut(s)	68, 472, 2120
BstUI	CGCG	1 cut(s)	2286
BstV1I	GCAGC	9 cut(s)	100, 103, 112, 115, 134, 334, 537, 725, 2125
BstV2I	GAAGAC	2 cut(s)	1310, 1344
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BstZI	CGGCCG	1 cut(s)	143
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	6 cut(s)	54, 145, 597, 1398, 2104, 2293
BtsCI	GGATG	6 cut(s)	740, 802, 1138, 1522, 1540, 1903
BtsI	GCAGTG	1 cut(s)	1457
BtsIMutI	CAGTG	4 cut(s)	1457, 1815, 1850, 2112
BtuMI	TCGCGA	1 cut(s)	2286
BveI	ACCTGC	1 cut(s)	1545
Cac8I	GCNNGC	2 cut(s)	1236, 1699
CaiI	CAGNNNCTG	2 cut(s)	113, 128
CfoI	GCGC	3 cut(s)	1642, 1649, 1753
Cfr13I	GGNCC	2 cut(s)	53, 1608
CseI	GACGC	1 cut(s)	287
CsiI	ACCWGGT	1 cut(s)	1992
Csp6I	GTAC	5 cut(s)	1477, 1617, 1912, 1946, 2219
CspCI	CAANNNNNGTGG	2 cut(s)	2055, 2090
CviQI	GTAC	5 cut(s)	1477, 1617, 1912, 1946, 2219
DdeI	CTNAG	4 cut(s)	516, 821, 1113, 1635
DpnI	GATC	9 cut(s)	333, 570, 684, 1036, 1413, 1449, 1456, 2289, 2340
DpnII	GATC	9 cut(s)	331, 568, 682, 1034, 1411, 1447, 1454, 2287, 2338
DraI	TTTAAA	2 cut(s)	345, 673
EaeI	YGGCCR	3 cut(s)	143, 1396, 2291
EagI	CGGCCG	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	561, 1374
EarI	CTCTTC	2 cut(s)	561, 1374
EclXI	CGGCCG	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	1545
Eco147I	AGGCCT	1 cut(s)	597
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	1608
Eco47III	AGCGCT	1 cut(s)	1752
Eco52I	CGGCCG	1 cut(s)	143
Eco57I	CTGAAG	4 cut(s)	267, 465, 1304, 1791
Eco81I	CCTNAGG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	492
Eco91I	GGTNACC	1 cut(s)	476
EcoNI	CCTNNNNNAGG	2 cut(s)	1500, 1658
EcoO109I	RGGNCCY	1 cut(s)	1608
EcoO65I	GGTNACC	1 cut(s)	476
EcoRII	CCWGG	5 cut(s)	55, 408, 589, 1653, 1992
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	1545
EcoT22I	ATGCAT	1 cut(s)	1703
ErhI	CCWWGG	1 cut(s)	1545
Esp3I	CGTCTC	1 cut(s)	822
FaqI	GGGAC	2 cut(s)	1070, 1821
FauNDI	CATATG	1 cut(s)	1703
FbaI	TGATCA	1 cut(s)	2338
FokI	GGATG	6 cut(s)	747, 789, 1125, 1509, 1527, 1910
FspBI	CTAG	6 cut(s)	288, 599, 1332, 2094, 2153, 2280
GlaI	GCGC	3 cut(s)	1641, 1648, 1752
GsuI	CTGGAG	1 cut(s)	1297
HaeII	RGCGCY	1 cut(s)	1754
HaeIII	GGCC	6 cut(s)	54, 145, 597, 1398, 2104, 2293
HapII	CCGG	3 cut(s)	539, 700, 1395
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	3 cut(s)	1642, 1649, 1753
Hin6I	GCGC	3 cut(s)	1640, 1647, 1751
HinP1I	GCGC	3 cut(s)	1640, 1647, 1751
HindIII	AAGCTT	2 cut(s)	17, 2069
HpaII	CCGG	3 cut(s)	539, 700, 1395
HphI	GGTGA	5 cut(s)	383, 1101, 1936, 1995, 2008
Hpy166II	GTNNAC	6 cut(s)	188, 310, 470, 532, 2118, 2201
Hpy188I	TCNGA	8 cut(s)	445, 796, 822, 846, 1089, 1303, 1411, 2253
Hpy8I	GTNNAC	6 cut(s)	188, 310, 470, 532, 2118, 2201
HpyAV	CCTTC	4 cut(s)	35, 440, 636, 2296
HpyCH4III	ACNGT	3 cut(s)	401, 1573, 1950
HpyCH4IV	ACGT	1 cut(s)	1717
HpyF3I	CTNAG	4 cut(s)	516, 821, 1113, 1635
HpySE526I	ACGT	1 cut(s)	1717
HspAI	GCGC	3 cut(s)	1640, 1647, 1751
Kpn2I	TCCGGA	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	2338
Kzo9I	GATC	9 cut(s)	331, 568, 682, 1034, 1411, 1447, 1454, 2287, 2338
LmnI	GCTCC	6 cut(s)	349, 664, 1511, 1531, 1715, 1748
Lsp1109I	GCAGC	9 cut(s)	100, 103, 112, 115, 134, 334, 537, 725, 2125
LweI	GCATC	6 cut(s)	725, 918, 1394, 1549, 1888, 1969
MabI	ACCWGGT	1 cut(s)	1992
MaeI	CTAG	6 cut(s)	288, 599, 1332, 2094, 2153, 2280
MaeII	ACGT	1 cut(s)	1717
MaeIII	GTNAC	7 cut(s)	476, 702, 885, 1280, 1485, 1877, 2001
MalI	GATC	9 cut(s)	333, 570, 684, 1036, 1413, 1449, 1456, 2289, 2340
MboI	GATC	9 cut(s)	331, 568, 682, 1034, 1411, 1447, 1454, 2287, 2338
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	4 cut(s)	68, 472, 1536, 2120
MlyI	GAGTC	4 cut(s)	713, 832, 2166, 2264
MmeI	TCCRAC	2 cut(s)	909, 1737
Mph1103I	ATGCAT	1 cut(s)	1703
MroI	TCCGGA	1 cut(s)	538
MroXI	GAANNNNTTC	2 cut(s)	625, 1020
MseI	TTAA	8 cut(s)	213, 344, 672, 836, 938, 2051, 2162, 2347
MslI	CAYNNNNRTG	3 cut(s)	894, 1584, 1702
MspA1I	CMGCKG	2 cut(s)	125, 550
MspCI	CTTAAG	1 cut(s)	2161
MspI	CCGG	3 cut(s)	539, 700, 1395
MspR9I	CCNGG	5 cut(s)	57, 410, 591, 1655, 1994
Mva1269I	GAATGC	1 cut(s)	858
MvaI	CCWGG	5 cut(s)	57, 410, 591, 1655, 1994
MvnI	CGCG	1 cut(s)	2286
NdeI	CATATG	1 cut(s)	1703
NdeII	GATC	9 cut(s)	331, 568, 682, 1034, 1411, 1447, 1454, 2287, 2338
NlaIV	GGNNCC	3 cut(s)	351, 1507, 1711
NmuCI	GTSAC	2 cut(s)	1877, 2001
NruI	TCGCGA	1 cut(s)	2286
NsiI	ATGCAT	1 cut(s)	1703
NspI	RCATGY	1 cut(s)	1701
PaeI	GCATGC	1 cut(s)	1701
PaeR7I	CTCGAG	1 cut(s)	492
PaqCI	CACCTGC	1 cut(s)	1545
PceI	AGGCCT	1 cut(s)	597
PctI	GAATGC	1 cut(s)	858
PdmI	GAANNNNTTC	2 cut(s)	625, 1020
PfeI	GAWTC	8 cut(s)	484, 871, 968, 1106, 1304, 1406, 1518, 2177
PflMI	CCANNNNNTGG	2 cut(s)	1031, 1528
Ple19I	CGATCG	1 cut(s)	2290
PleI	GAGTC	4 cut(s)	713, 831, 2165, 2264
PpsI	GAGTC	4 cut(s)	713, 831, 2165, 2264
PpuMI	RGGWCCY	1 cut(s)	1608
Psp5II	RGGWCCY	1 cut(s)	1608
Psp6I	CCWGG	5 cut(s)	55, 408, 589, 1653, 1992
PspEI	GGTNACC	1 cut(s)	476
PspGI	CCWGG	5 cut(s)	55, 408, 589, 1653, 1992
PspN4I	GGNNCC	3 cut(s)	351, 1507, 1711
PspPI	GGNCC	2 cut(s)	53, 1608
PspPPI	RGGWCCY	1 cut(s)	1608
PstI	CTGCAG	1 cut(s)	1464
PstNI	CAGNNNCTG	2 cut(s)	113, 128
PsuI	RGATCY	1 cut(s)	568
PvuI	CGATCG	1 cut(s)	2290
PvuII	CAGCTG	2 cut(s)	125, 550
RruI	TCGCGA	1 cut(s)	2286
RsaI	GTAC	5 cut(s)	1478, 1618, 1913, 1947, 2220
RsaNI	GTAC	5 cut(s)	1477, 1617, 1912, 1946, 2219
RseI	CAYNNNNRTG	3 cut(s)	894, 1584, 1702
SaqAI	TTAA	8 cut(s)	213, 344, 672, 836, 938, 2051, 2162, 2347
Sau3AI	GATC	9 cut(s)	331, 568, 682, 1034, 1411, 1447, 1454, 2287, 2338
Sau96I	GGNCC	2 cut(s)	53, 1608
ScaI	AGTACT	1 cut(s)	1478
SchI	GAGTC	4 cut(s)	713, 832, 2166, 2264
ScrFI	CCNGG	5 cut(s)	57, 410, 591, 1655, 1994
SduI	GDGCHC	4 cut(s)	68, 472, 1536, 2120
SexAI	ACCWGGT	1 cut(s)	1992
SfaNI	GCATC	6 cut(s)	725, 918, 1394, 1549, 1888, 1969
SfcI	CTRYAG	2 cut(s)	1460, 1612
Sfr274I	CTCGAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	1608
SlaI	CTCGAG	1 cut(s)	492
SmiMI	CAYNNNNRTG	3 cut(s)	894, 1584, 1702
SmlI	CTYRAG	3 cut(s)	235, 492, 2161
SmoI	CTYRAG	3 cut(s)	235, 492, 2161
SphI	GCATGC	1 cut(s)	1701
SseBI	AGGCCT	1 cut(s)	597
SsiI	CCGC	1 cut(s)	120
SspI	AATATT	3 cut(s)	428, 508, 1553
SspMI	CTAG	6 cut(s)	288, 599, 1332, 2094, 2153, 2280
StuI	AGGCCT	1 cut(s)	597
StyD4I	CCNGG	5 cut(s)	55, 408, 589, 1653, 1992
StyI	CCWWGG	1 cut(s)	1545
TaaI	ACNGT	3 cut(s)	401, 1573, 1950
TaiI	ACGT	1 cut(s)	1720
TaqI	TCGA	6 cut(s)	366, 493, 866, 1362, 2225, 2268
TatI	WGTACW	4 cut(s)	1476, 1616, 1945, 2218
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	8 cut(s)	484, 871, 968, 1106, 1304, 1406, 1518, 2177
Tru1I	TTAA	8 cut(s)	213, 344, 672, 836, 938, 2051, 2162, 2347
Tru9I	TTAA	8 cut(s)	213, 344, 672, 836, 938, 2051, 2162, 2347
TscAI	CASTG	4 cut(s)	1464, 1815, 1850, 2112
TseFI	GTSAC	2 cut(s)	1877, 2001
TseI	GCWGC	9 cut(s)	113, 116, 122, 125, 128, 322, 550, 738, 2138
Tsp45I	GTSAC	2 cut(s)	1877, 2001
TspGWI	ACGGA	3 cut(s)	104, 1899, 2186
TspRI	CASTG	4 cut(s)	1464, 1815, 1850, 2112
Van91I	CCANNNNNTGG	2 cut(s)	1031, 1528
Vha464I	CTTAAG	1 cut(s)	2161
VneI	GTGCAC	2 cut(s)	468, 2116
VpaK11BI	GGWCC	1 cut(s)	1608
XagI	CCTNNNNNAGG	2 cut(s)	1500, 1658
XapI	RAATTY	5 cut(s)	997, 1020, 1079, 1345, 1628
XceI	RCATGY	1 cut(s)	1701
XhoI	CTCGAG	1 cut(s)	492
XmnI	GAANNNNTTC	2 cut(s)	625, 1020
XspI	CTAG	6 cut(s)	288, 599, 1332, 2094, 2153, 2280
ZrmI	AGTACT	1 cut(s)	1478
Zsp2I	ATGCAT	1 cut(s)	1703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.